Published in Mol Biol Evol on May 12, 2004
Widespread discordance of gene trees with species tree in Drosophila: evidence for incomplete lineage sorting. PLoS Genet (2006) 3.01
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol Biol (2010) 2.58
The Apicomplexan whole-genome phylogeny: an analysis of incongruence among gene trees. Mol Biol Evol (2008) 1.48
Long-branch attraction bias and inconsistency in Bayesian phylogenetics. PLoS One (2009) 1.45
Evaluation of clustering algorithms for gene expression data. BMC Bioinformatics (2006) 1.26
Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods. PLoS One (2011) 1.25
The evolution of novel fungal genes from non-retroviral RNA viruses. BMC Biol (2009) 1.24
Phylogenetic incongruence arising from fragmented speciation in enteric bacteria. Proc Natl Acad Sci U S A (2010) 1.20
Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects. BMC Evol Biol (2007) 1.20
Phylogenetic inference with weighted codon evolutionary distances. J Mol Evol (2009) 0.83
Retracted Measures of clade confidence do not correlate with accuracy of phylogenetic trees. PLoS Comput Biol (2007) 0.79
Evidence that ebolaviruses and cuevaviruses have been diverging from marburgviruses since the Miocene. PeerJ (2014) 0.79
Genome-Based Taxonomic Classification of Bacteroidetes. Front Microbiol (2016) 0.76
Automated masking of AFLP markers improves reliability of phylogenetic analyses. PLoS One (2012) 0.76
PhyloWidget: web-based visualizations for the tree of life. Bioinformatics (2008) 7.37
The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Front Plant Sci (2011) 4.16
The taxonomic name resolution service: an online tool for automated standardization of plant names. BMC Bioinformatics (2013) 2.59
The HSP90 family of genes in the human genome: insights into their divergence and evolution. Genomics (2005) 2.17
A single origin for nymphalid butterfly eyespots followed by widespread loss of associated gene expression. PLoS Genet (2012) 1.29
The genomic response of skeletal muscle to methylprednisolone using microarrays: tailoring data mining to the structure of the pharmacogenomic time series. Pharmacogenomics (2004) 1.05
Widespread polyphyly among Alopiinae snail genera: when phylogeny mirrors biogeography more closely than morphology. Mol Phylogenet Evol (2004) 0.92
Fast structural search in phylogenetic databases. Evol Bioinform Online (2007) 0.89
Tempo of speciation in a butterfly genus from the Southeast Asian tropics, inferred from mitochondrial and nuclear DNA sequence data. Mol Phylogenet Evol (2004) 0.84