Published in BMC Bioinformatics on June 04, 2004
The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res (2013) 10.24
Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus. Nature (2013) 5.35
Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor. Nature (2008) 5.24
Remediation of the protein data bank archive. Nucleic Acids Res (2007) 4.89
A new generation of crystallographic validation tools for the protein data bank. Structure (2011) 3.41
Crystallographic refinement of ligand complexes. Acta Crystallogr D Biol Crystallogr (2006) 2.47
PDB_REDO: automated re-refinement of X-ray structure models in the PDB. J Appl Crystallogr (2009) 2.19
The PDB_REDO server for macromolecular structure model optimization. IUCrJ (2014) 2.14
PDB_REDO: constructive validation, more than just looking for errors. Acta Crystallogr D Biol Crystallogr (2012) 2.08
Re-refinement from deposited X-ray data can deliver improved models for most PDB entries. Acta Crystallogr D Biol Crystallogr (2009) 1.97
Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB. Nucleic Acids Res (2005) 1.84
Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank. Bioinformatics (2011) 1.48
Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer. Science (2016) 1.36
Analysis and validation of carbohydrate three-dimensional structures. Acta Crystallogr D Biol Crystallogr (2009) 1.08
Privateer: software for the conformational validation of carbohydrate structures. Nat Struct Mol Biol (2015) 1.07
Computational glycoscience: characterizing the spatial and temporal properties of glycans and glycan-protein complexes. Curr Opin Struct Biol (2010) 1.00
Glycoconjugate Data Bank: Structures--an annotated glycan structure database and N-glycan primary structure verification service. Nucleic Acids Res (2007) 0.99
Techniques and tactics used in determining the structure of the trimeric ebolavirus glycoprotein. Acta Crystallogr D Biol Crystallogr (2009) 0.99
Interfacial cavity filling to optimize CD4-mimetic miniprotein interactions with HIV-1 surface glycoprotein. J Med Chem (2013) 0.95
Model Building and Refinement of a Natively Glycosylated HIV-1 Env Protein by High-Resolution Cryoelectron Microscopy. Structure (2015) 0.94
Conformational flexibility in immunoglobulin E-Fc 3-4 revealed in multiple crystal forms. J Mol Biol (2009) 0.94
A structured interdomain linker directs self-polymerization of human uromodulin. Proc Natl Acad Sci U S A (2016) 0.90
Models of protein-ligand crystal structures: trust, but verify. J Comput Aided Mol Des (2015) 0.88
ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank. Nucleic Acids Res (2014) 0.88
Complete epitopes for vaccine design derived from a crystal structure of the broadly neutralizing antibodies PGT128 and 8ANC195 in complex with an HIV-1 Env trimer. Acta Crystallogr D Biol Crystallogr (2015) 0.87
High-Resolution Crystal Structures Elucidate the Molecular Basis of Cholera Blood Group Dependence. PLoS Pathog (2016) 0.86
Molecular Interactions between Complement Factor H and Its Heparin and Heparan Sulfate Ligands. Front Immunol (2014) 0.85
Detailed insights from microarray and crystallographic studies into carbohydrate recognition by microneme protein 1 (MIC1) of Toxoplasma gondii. Protein Sci (2009) 0.85
Using databases and web resources for glycomics research. Mol Cell Proteomics (2013) 0.84
New insights into intra- and intermolecular interactions of immunoglobulins: crystal structure of mouse IgG2b-Fc at 2.1-A resolution. Immunology (2008) 0.83
Structural basis for disparate sugar-binding specificities in the homologous cargo receptors ERGIC-53 and VIP36. PLoS One (2014) 0.82
The solution structure of heparan sulfate differs from that of heparin: implications for function. J Biol Chem (2013) 0.80
Heavy chain-only IgG2b llama antibody effects near-pan HIV-1 neutralization by recognizing a CD4-induced epitope that includes elements of coreceptor- and CD4-binding sites. J Virol (2013) 0.80
MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes. Nucleic Acids Res (2014) 0.80
Regulators of complement activity mediate inhibitory mechanisms through a common C3b-binding mode. EMBO J (2016) 0.79
The use of glycoinformatics in glycochemistry. Beilstein J Org Chem (2012) 0.79
Visualisation of cyclic and multi-branched molecules with VMD. J Mol Graph Model (2009) 0.79
Strategies for carbohydrate model building, refinement and validation. Acta Crystallogr D Struct Biol (2017) 0.79
An engineered disulfide bond reversibly traps the IgE-Fc3-4 in a closed, nonreceptor binding conformation. J Biol Chem (2012) 0.78
Carbohydrates in Cyberspace. Front Immunol (2015) 0.78
Recent advances in employing molecular modelling to determine the specificity of glycan-binding proteins. Curr Opin Struct Biol (2014) 0.78
Vina-Carb: Improving Glycosidic Angles during Carbohydrate Docking. J Chem Theory Comput (2016) 0.76
Glycoscience finally comes of age. EMBO Rep (2005) 0.76
Crystal structure of the HIV neutralizing antibody 2G12 in complex with a bacterial oligosaccharide analog of mammalian oligomannose. Glycobiology (2014) 0.75
Functional network of glycan-related molecules: glyco-net in glycoconjugate data bank. BMC Syst Biol (2010) 0.75
Molecular dynamics simulations of glycoproteins using CHARMM. Methods Mol Biol (2015) 0.75
Modeling of oligosaccharides within glycoproteins from free-energy landscapes. J Chem Inf Model (2017) 0.75
Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike. Nature (2017) 0.75
Azahar: a PyMOL plugin for construction, visualization and analysis of glycan molecules. J Comput Aided Mol Des (2016) 0.75
Two-Faced Fcab Prevents Polymerization with VEGF and Reveals Thermodynamics and the 2.15 Å Crystal Structure of the Complex. MAbs (2017) 0.75
The Protein Data Bank. Nucleic Acids Res (2000) 187.10
Errors in protein structures. Nature (1996) 18.70
Stereochemical quality of protein structure coordinates. Proteins (1992) 9.18
On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. Biochim Biophys Acta (1999) 7.38
Glycobiology. Annu Rev Biochem (1988) 4.51
Statistical analysis of the protein environment of N-glycosylation sites: implications for occupancy, structure, and folding. Glycobiology (2003) 3.19
LINUCS: linear notation for unique description of carbohydrate sequences. Carbohydr Res (2001) 2.02
Data mining the protein data bank: automatic detection and assignment of carbohydrate structures. Carbohydr Res (2004) 1.89
Biases and complex patterns in the residues flanking protein N-glycosylation sites. Glycobiology (2003) 1.89
SWEET-DB: an attempt to create annotated data collections for carbohydrates. Nucleic Acids Res (2002) 1.67
Nomenclature of carbohydrates (recommendations 1996). Adv Carbohydr Chem Biochem (1997) 1.59
GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research. Glycobiology (2005) 2.41
Data mining the protein data bank: automatic detection and assignment of carbohydrate structures. Carbohydr Res (2004) 1.89
Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB. Nucleic Acids Res (2005) 1.84
SWEET-DB: an attempt to create annotated data collections for carbohydrates. Nucleic Acids Res (2002) 1.67
Intracellular visualization of prostate cancer using magnetic resonance imaging. Cancer Res (2003) 1.52
GlycoFragment and GlycoSearchMS: web tools to support the interpretation of mass spectra of complex carbohydrates. Nucleic Acids Res (2004) 1.15
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de. Nucleic Acids Res (2007) 0.99
Influence of human serum albumin on longitudinal and transverse relaxation rates (r1 and r2) of magnetic resonance contrast agents. Invest Radiol (2006) 0.91
Identification and characterization of riproximin, a new type II ribosome-inactivating protein with antineoplastic activity from Ximenia americana. FASEB J (2006) 0.90
GLYCO-FRAGMENT: A web tool to support the interpretation of mass spectra of complex carbohydrates. Proteomics (2003) 0.88
GlyNest and CASPER: two independent approaches to estimate 1H and 13C NMR shifts of glycans available through a common web-interface. Nucleic Acids Res (2006) 0.82
Regioselectively modified sulfated cellulose as prospective drug for treatment of malaria tropica. Glycoconj J (2007) 0.78