Published in J Proteome Res on July 15, 2004
Identification of a copper-binding metallothionein in pathogenic mycobacteria. Nat Chem Biol (2008) 1.90
Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias. Genome Res (2005) 1.43
Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions. BMC Genomics (2013) 1.38
Computational methods for protein identification from mass spectrometry data. PLoS Comput Biol (2008) 1.10
Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity. PLoS One (2011) 0.89
Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs. BMC Bioinformatics (2006) 0.78
HybGFS: a hybrid method for genome-fingerprint scanning. BMC Bioinformatics (2006) 0.75
The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol (2007) 10.24
Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease. PLoS One (2011) 2.80
Optimal replication and the importance of experimental design for gel-based quantitative proteomics. J Proteome Res (2005) 1.73
GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update. Nucleic Acids Res (2003) 1.60
Protein glycosylation pathways in filamentous fungi. Glycobiology (2008) 1.28
Generation of mice deficient in both KLF3/BKLF and KLF8 reveals a genetic interaction and a role for these factors in embryonic globin gene silencing. Mol Cell Biol (2013) 1.18
The secretome of Campylobacter concisus. FEBS J (2010) 1.18
UniCarbKB: putting the pieces together for glycomics research. Proteomics (2011) 1.17
The methylproteome and the intracellular methylation network. Proteomics (2012) 1.14
Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications. BMC Genomics (2010) 1.13
The pathogenic potential of Campylobacter concisus strains associated with chronic intestinal diseases. PLoS One (2011) 1.00
Methylation of translation-associated proteins in Saccharomyces cerevisiae: Identification of methylated lysines and their methyltransferases. Proteomics (2012) 0.96
Unseen proteome: mining below the tip of the iceberg to find low abundance and membrane proteins. J Proteome Res (2003) 0.94
Comparative analyses of Campylobacter concisus strains reveal the genome of the reference strain BAA-1457 is not representative of the species. Gut Pathog (2011) 0.93
The CACCC-binding protein KLF3/BKLF represses a subset of KLF1/EKLF target genes and is required for proper erythroid maturation in vivo. Mol Cell Biol (2012) 0.93
Cytomegalovirus infection during pregnancy with maternofetal transmission induces a proinflammatory cytokine bias in placenta and amniotic fluid. J Infect Dis (2012) 0.93
Comparative genomics of Campylobacter concisus isolates reveals genetic diversity and provides insights into disease association. BMC Genomics (2013) 0.90
Children with islet autoimmunity and enterovirus infection demonstrate a distinct cytokine profile. Diabetes (2012) 0.90
Interactive three-dimensional visualization and contextual analysis of protein interaction networks. J Proteome Res (2007) 0.89
Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity. PLoS One (2011) 0.89
Identification and functional analysis of RNase E of Vibrio angustum S14 and two-hybrid analysis of its interaction partners. Biochim Biophys Acta (2009) 0.88
Protein-protein interactions and disease: use of S. cerevisiae as a model system. Biochim Biophys Acta (2007) 0.86
Tools to covisualize and coanalyze proteomic data with genomes and transcriptomes: validation of genes and alternative mRNA splicing. J Proteome Res (2013) 0.85
A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversity. BMC Genomics (2014) 0.85
Immonium ion scanning for the discovery of post-translational modifications and its application to histones. J Proteome Res (2008) 0.84
Identification of cellular changes associated with increased production of human growth hormone in a recombinant Chinese hamster ovary cell line. Proteomics (2003) 0.84
Stoichiometry of Saccharomyces cerevisiae lysine methylation: insights into non-histone protein lysine methyltransferase activity. J Proteome Res (2014) 0.83
Characterisation of organellar proteomes: a guide to subcellular proteomic fractionation and analysis. Proteomics (2006) 0.82
Protein arginine methylation in Saccharomyces cerevisiae. FEBS J (2012) 0.82
Monitoring cytoplasmic protein complexes with blue native gel electrophoresis and stable isotope labelling with amino acids in cell culture: analysis of changes in the 20S proteasome. Electrophoresis (2011) 0.81
Enhanced methylarginine characterization by post-translational modification-specific targeted data acquisition and electron-transfer dissociation mass spectrometry. J Am Soc Mass Spectrom (2012) 0.81
Analysis of the proteome of Saccharomyces cerevisiae for methylarginine. J Proteome Res (2013) 0.81
Visualization of the interactome: what are we looking at? Proteomics (2012) 0.81
Molecular interaction networks for the analysis of human disease: utility, limitations, and considerations. Proteomics (2013) 0.80
Classification of cancer patients using pathway analysis and network clustering. Methods Mol Biol (2011) 0.80
The draft genome of the pest tephritid fruit fly Bactrocera tryoni: resources for the genomic analysis of hybridising species. BMC Genomics (2014) 0.80
Time-course proteome analysis reveals the dynamic response of Cryptococcus gattii cells to fluconazole. PLoS One (2012) 0.79
Interactions affected by arginine methylation in the yeast protein-protein interaction network. Mol Cell Proteomics (2013) 0.79
Genome Sequence of Dehalobacter UNSWDHB, a Chloroform-Dechlorinating Bacterium. Genome Announc (2013) 0.79
GlycoViewer: a tool for visual summary and comparative analysis of the glycome. Nucleic Acids Res (2010) 0.78
Sphingosine kinase 1 isoform-specific interactions in breast cancer. Mol Endocrinol (2014) 0.78
Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance. J Proteome Res (2010) 0.78
Draft Genome Sequences of Two Clinical Isolates of Lactobacillus rhamnosus from Initial Stages of Dental Pulp Infection. Genome Announc (2013) 0.78
Four-dimensional visualisation and analysis of protein-protein interaction networks. Proteomics (2011) 0.78
Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden. Pigment Cell Melanoma Res (2013) 0.78
Analysis of the RNA degradosome complex in Vibrio angustum S14. FEBS J (2010) 0.78
Visualization and analysis of the complexome network of Saccharomyces cerevisiae. J Proteome Res (2011) 0.78
A multidimensional matrix for systems biology research and its application to interaction networks. J Proteome Res (2012) 0.77
Dynamic hubs show competitive and static hubs non-competitive regulation of their interaction partners. PLoS One (2012) 0.77
Response of Helicobacter hepaticus to bovine bile. J Proteome Res (2010) 0.77
Micropreparative fractionation of the complexome by blue native continuous elution electrophoresis. Proteomics (2009) 0.76
A conditional two-hybrid (C2H) system for the detection of protein-protein interactions that are mediated by post-translational modification. Proteomics (2013) 0.76
Using the clustered circular layout as an informative method for visualizing protein-protein interaction networks. Proteomics (2010) 0.76
A web of possibilities: network-based discovery of protein interaction codes. J Proteome Res (2014) 0.76
High throughput protein-protein interaction data: clues for the architecture of protein complexes. Proteome Sci (2008) 0.76
Inter-individual variation in expression: a missing link in biomarker biology? Trends Biotechnol (2008) 0.76
Genome Sequence of Campylobacter showae UNSWCD, Isolated from a Patient with Crohn's Disease. Genome Announc (2013) 0.75
Sequencing of hippocampal and cerebellar transcriptomes provides new insights into the complexity of gene regulation in the human brain. Neurosci Lett (2013) 0.75
VAN: an R package for identifying biologically perturbed networks via differential variability analysis. BMC Res Notes (2013) 0.75
The major pathway by which polymeric formula reduces inflammation in intestinal epithelial cells: a microarray-based analysis. Genes Nutr (2015) 0.75
The Interactorium: visualising proteins, complexes and interaction networks in a virtual 3-D cell. Proteomics (2009) 0.75
Online resources for the molecular contextualization of disease. Methods Mol Med (2008) 0.75
MethylQuant: a tool for sensitive validation of enzyme-mediated protein methylation sites from heavy-methyl SILAC data. J Proteome Res (2017) 0.75