Published in Prog Biophys Mol Biol on September 01, 2004
Stochastic amplification and signaling in enzymatic futile cycles through noise-induced bistability with oscillations. Proc Natl Acad Sci U S A (2005) 2.71
Recent developments in parameter estimation and structure identification of biochemical and genomic systems. Math Biosci (2009) 2.58
Network modeling of the transcriptional effects of copy number aberrations in glioblastoma. Mol Syst Biol (2011) 1.26
Inference of complex biological networks: distinguishability issues and optimization-based solutions. BMC Syst Biol (2011) 1.20
Automated refinement and inference of analytical models for metabolic networks. Phys Biol (2011) 1.20
Reverse engineering cellular networks with information theoretic methods. Cells (2013) 1.18
Efficient, sparse biological network determination. BMC Syst Biol (2009) 1.08
MIDER: network inference with mutual information distance and entropy reduction. PLoS One (2014) 1.07
Modelling reaction kinetics inside cells. Essays Biochem (2008) 1.05
Numerical Matrices Method for nonlinear system identification and description of dynamics of biochemical reaction networks. Biophys J (2007) 1.01
Use and abuse of the quasi-steady-state approximation. Syst Biol (Stevenage) (2006) 0.97
Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks. BMC Bioinformatics (2010) 0.93
Logic-based models in systems biology: a predictive and parameter-free network analysis method. Integr Biol (Camb) (2012) 0.90
Algebraic methods for inferring biochemical networks: a maximum likelihood approach. Comput Biol Chem (2009) 0.88
Benchmarks for identification of ordinary differential equations from time series data. Bioinformatics (2009) 0.87
Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays. Proc Natl Acad Sci U S A (2007) 0.86
Characterizability of metabolic pathway systems from time series data. Math Biosci (2013) 0.86
Statistical Model for Biochemical Network Inference. Commun Stat Simul Comput (2012) 0.83
Metabolic network discovery by top-down and bottom-up approaches and paths for reconciliation. Front Bioeng Biotechnol (2014) 0.83
Functional association networks as priors for gene regulatory network inference. Bioinformatics (2014) 0.82
Inferring the Effects of Honokiol on the Notch Signaling Pathway in SW480 Colon Cancer Cells. Cancer Inform (2014) 0.82
Mesoscopic modeling as a starting point for computational analyses of cystic fibrosis as a systemic disease. Biochim Biophys Acta (2013) 0.80
Inferring biochemical reaction pathways: the case of the gemcitabine pharmacokinetics. BMC Syst Biol (2012) 0.79
Integration of steady-state and temporal gene expression data for the inference of gene regulatory networks. PLoS One (2013) 0.79
Thermodynamically consistent Bayesian analysis of closed biochemical reaction systems. BMC Bioinformatics (2010) 0.78
A graphical user interface for a method to infer kinetics and network architecture (MIKANA). PLoS One (2011) 0.78
Modeling cholesterol metabolism by gene expression profiling in the hippocampus. Mol Biosyst (2011) 0.76
Thermodynamically consistent model calibration in chemical kinetics. BMC Syst Biol (2011) 0.75
Mechanistic and Kinetic Studies of the Direct Alkylation of Benzylic Amines: A Formal C(sp(3))-H Activation Proceeds Actually via a C(sp(2))-H Activation Pathway. ACS Catal (2014) 0.75
Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach. Syst Biol (Stevenage) (2006) 0.75
Computational modelling of genome-wide [corrected] transcription assembly networks using a fluidics analogy. PLoS One (2008) 0.75
The best models of metabolism. Wiley Interdiscip Rev Syst Biol Med (2017) 0.75
Ammonium and Nitrite Inhibition of Methane Oxidation by Methylobacter albus BG8 and Methylosinus trichosporium OB3b at Low Methane Concentrations. Appl Environ Microbiol (1994) 2.24
Stochastic approaches for modelling in vivo reactions. Comput Biol Chem (2004) 2.09
Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane. Appl Environ Microbiol (2000) 1.90
Microbiology of flooded rice paddies. FEMS Microbiol Rev (2000) 1.88
Responses of methanotrophic activity in soils and cultures to water stress. Appl Environ Microbiol (1996) 1.57
Intracranial 4D flow MRI: toward individualized assessment of arteriovenous malformation hemodynamics and treatment-induced changes. AJNR Am J Neuroradiol (2013) 1.46
A systematic investigation of the rate laws valid in intracellular environments. Biophys Chem (2006) 1.23
Connecting and merging fibres: pathway extraction by combining probability maps. Neuroimage (2008) 1.16
High neuroticism and depressive temperament are associated with dysfunctional regulation of the hypothalamic-pituitary-adrenocortical system in healthy volunteers. Acta Psychiatr Scand (2004) 1.11
A clock and wavefront mechanism for somite formation. Dev Biol (2006) 1.08
Preparation for football competition at moderate to high altitude. Scand J Med Sci Sports (2008) 1.07
Lentivirus-transduced human monocyte-derived dendritic cells efficiently stimulate antigen-specific cytotoxic T lymphocytes. Blood (2001) 1.06
Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates. Appl Environ Microbiol (2012) 1.02
Nitrate-dependent iron(II) oxidation in paddy soil. Environ Microbiol (2001) 0.99
Use and abuse of the quasi-steady-state approximation. Syst Biol (Stevenage) (2006) 0.97
Effects of Ammonium and Non-Ammonium Salt Additions on Methane Oxidation by Methylosinus trichosporium OB3b and Maine Forest Soils. Appl Environ Microbiol (1998) 0.96
Testing the assumptions of linear prediction analysis in normal vowels. J Acoust Soc Am (2006) 0.95
A cell cycle model for somitogenesis: mathematical formulation and numerical simulation. J Theor Biol (2000) 0.89
Gender identification of dried human bloodstains using fluorescence in situ hybridization. J Forensic Sci (1995) 0.88
The circadian clock in oral health and diseases. J Dent Res (2013) 0.86
Turing pattern outside of the Turing domain. Appl Math Lett (2007) 0.86
Comparison of fluorescence in situ hybridization, cytogenetic analysis, and DNA index analysis to detect chromosomes 4 and 10 aneuploidy in pediatric acute lymphoblastic leukemia: a Pediatric Oncology Group study. J Pediatr Hematol Oncol (1996) 0.85
Microbial reduction of weakly crystalline iron (III) oxides and suppression of methanogenesis in paddy soil. Bull Environ Contam Toxicol (2004) 0.85
Sequential Transhydroxylations Converting Hydroxyhydroquinone to Phloroglucinol in the Strictly Anaerobic, Fermentative Bacterium Pelobacter massiliensis. Appl Environ Microbiol (1992) 0.84
Hydrogenotrophic methanogens dominate in biogas reactors fed with defined substrates. Syst Appl Microbiol (2012) 0.83
A mathematical investigation of a Clock and Wavefront model for somitogenesis. J Math Biol (2006) 0.82
Distributions-per-level: a means of testing level detectors and models of patch-clamp data. J Membr Biol (2004) 0.82
Effects of silver nanoparticles on microbial growth dynamics. J Appl Microbiol (2012) 0.81
Limit cycles in the presence of convection: a traveling wave analysis. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.81
A mathematical formulation for the cell-cycle model in somitogenesis: analysis, parameter constraints and numerical solutions. Math Med Biol (2004) 0.80
Genetic basis and risk factors for infectious and noninfectious diseases in US Holsteins. I. Estimation of genetic parameters for single diseases and general health. J Dairy Sci (2005) 0.80
Growth inhibition of Cronobacter spp. strains in reconstituted powdered infant formula acidified with organic acids supported by natural stomach acidity. Food Microbiol (2013) 0.79
Expression of sodium channels with different saxitoxin affinity during rat forebrain development. Brain Res Dev Brain Res (1994) 0.79
Constitutive and induced hepatic microsomal cytochrome P-450 monooxygenase activities in male Fischer-344 and CD rats. A comparative study. Toxicol Appl Pharmacol (1980) 0.78
Identification of sperm and non-sperm male cells in cervicovaginal smears using fluorescence in situ hybridization: applications in alleged sexual assault cases. J Forensic Sci (1994) 0.78
Complete assimilation of cysteine by a newly isolated non-sulfur purple bacterium resembling Rhodovulum sulfidophilum (Rhodobacter sulfidophilus). Arch Microbiol (1996) 0.77
Influence of grape treatment on the wine yeast populations isolated from spontaneous fermentations. J Appl Microbiol (2006) 0.77
Occurrence of Xanthomonas axonopodis pv. phaseoli, the causal agent of common bacterial blight disease, on seeds of common bean (Phaseolus vulgaris L.) in upper Egypt. Folia Microbiol (Praha) (2010) 0.77
Identification of male epithelial cells in routine postcoital cervicovaginal smears using fluorescence in situ hybridization. Application in sexual assault and molestation. Am J Clin Pathol (1995) 0.75
[Effect of iron oxide addition on hydrogen, carbon dioxide and methane geneses in paddy soil]. Ying Yong Sheng Tai Xue Bao (2003) 0.75
Stability of activating systems for in vitro mutagenesis assays: enzyme activity and activating ability following long-term storage at - 85 degrees C. Environ Mutagen (1981) 0.75
[Microbial reduction ability of various iron oxides in pure culture experiment]. Wei Sheng Wu Xue Bao (2001) 0.75
[Selective RPE laser treatment with a scanned cw laser beam in rabbits]. Ophthalmologe (2005) 0.75
Tumors of the spine and spinal cord. Semin Oncol Nurs (1998) 0.75
Correlations among body condition scores from various sources, dairy form, and cow health from the United States and Denmark. J Dairy Sci (2004) 0.75
Genetic impacts of using female-sorted semen in commercial and nucleus herds. J Dairy Sci (2007) 0.75