Published in J Chem Phys on June 01, 2004
Gating mechanism of the influenza A M2 channel revealed by 1D and 2D IR spectroscopies. Structure (2009) 2.04
Picosecond dynamics of a membrane protein revealed by 2D IR. Proc Natl Acad Sci U S A (2006) 1.77
Empirical amide I vibrational frequency map: application to 2D-IR line shapes for isotope-edited membrane peptide bundles. J Phys Chem B (2009) 1.36
2DIR spectroscopy of human amylin fibrils reflects stable β-sheet structure. J Am Chem Soc (2011) 1.20
Development and validation of transferable amide I vibrational frequency maps for peptides. J Phys Chem B (2011) 1.18
Residue-specific vibrational echoes yield 3D structures of a transmembrane helix dimer. Science (2011) 1.17
Strategies for extracting structural information from 2D IR spectroscopy of amyloid: application to islet amyloid polypeptide. J Phys Chem B (2009) 1.16
Probing the structure of a rotaxane with two-dimensional infrared spectroscopy. Proc Natl Acad Sci U S A (2005) 1.08
Two-dimensional infrared spectroscopy provides evidence of an intermediate in the membrane-catalyzed assembly of diabetic amyloid. J Phys Chem B (2009) 1.07
A two-dimensional infrared study of localization, structure, and dynamics of a dipeptide in membrane environment. Biophys J (2004) 1.06
Solution structures of rat amylin peptide: simulation, theory, and experiment. Biophys J (2010) 1.04
Local structure of beta-hairpin isotopomers by FTIR, 2D IR, and ab initio theory. J Phys Chem B (2006) 1.04
Structural disorder of the CD3zeta transmembrane domain studied with 2D IR spectroscopy and molecular dynamics simulations. J Phys Chem B (2006) 1.04
Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid and protein infrared spectra. J Am Chem Soc (2012) 0.99
Two-dimensional IR spectroscopy of protein dynamics using two vibrational labels: a site-specific genetically encoded unnatural amino acid and an active site ligand. J Phys Chem B (2011) 0.98
Two-dimensional infrared spectroscopy displays signatures of structural ordering in peptide aggregates. Biophys J (2006) 0.92
Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides. J Phys Chem Lett (2011) 0.86
Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. J Phys Chem Lett (2012) 0.82
Thermally induced protein unfolding probed by isotope-edited IR spectroscopy. J Phys Chem B (2012) 0.79
Distinguishing gramicidin D conformers through two-dimensional infrared spectroscopy of vibrational excitons. J Chem Phys (2015) 0.78
Visualizing KcsA conformational changes upon ion binding by infrared spectroscopy and atomistic modeling. J Phys Chem B (2015) 0.78
Frequency distribution of the amide-I vibration sorted by residues in amyloid fibrils revealed by 2D-IR measurements and simulations. J Phys Chem B (2012) 0.77
Theoretical Sum Frequency Generation Spectroscopy of Peptides. J Phys Chem B (2014) 0.75
Kinetic Isotope Effect Provides Insight into the Vibrational Relaxation Mechanism of Aromatic Molecules: Application to Cyano-phenylalanine. J Phys Chem Lett (2016) 0.75
Gating mechanism of the influenza A M2 channel revealed by 1D and 2D IR spectroscopies. Structure (2009) 2.04
Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution. Proc Natl Acad Sci U S A (2009) 2.02
Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins. J Phys Chem B (2008) 1.90
Picosecond dynamics of a membrane protein revealed by 2D IR. Proc Natl Acad Sci U S A (2006) 1.77
Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Plant Physiol (2002) 1.70
Automated 2D IR spectroscopy using a mid-IR pulse shaper and application of this technology to the human islet amyloid polypeptide. Proc Natl Acad Sci U S A (2007) 1.64
A novel method of resistance for influenza against a channel-blocking antiviral drug. Proteins (2004) 1.48
A pulse sequence for directly measuring the anharmonicities of coupled vibrations: Two-quantum two-dimensional infrared spectroscopy. J Chem Phys (2004) 1.44
Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nat Chem (2012) 1.39
Tracking fiber formation in human islet amyloid polypeptide with automated 2D-IR spectroscopy. J Am Chem Soc (2008) 1.38
Structural conservation in the major facilitator superfamily as revealed by comparative modeling. Protein Sci (2004) 1.36
Dynamic control of slow water transport by aquaporin 0: implications for hydration and junction stability in the eye lens. Proc Natl Acad Sci U S A (2008) 1.30
Femtosecond pulse shaping directly in the mid-IR using acousto-optic modulation. Opt Lett (2006) 1.28
2D IR line shapes probe ovispirin peptide conformation and depth in lipid bilayers. J Am Chem Soc (2010) 1.25
How to turn your pump-probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping. Phys Chem Chem Phys (2008) 1.24
Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient β-sheet. Proc Natl Acad Sci U S A (2013) 1.20
2DIR spectroscopy of human amylin fibrils reflects stable β-sheet structure. J Am Chem Soc (2011) 1.20
Interaction and conformational dynamics of membrane-spanning protein helices. Protein Sci (2009) 1.19
Multiple site-specific infrared dichroism of CD3-zeta, a transmembrane helix bundle. J Mol Biol (2002) 1.17
Residue-specific structural kinetics of proteins through the union of isotope labeling, mid-IR pulse shaping, and coherent 2D IR spectroscopy. Methods (2010) 1.16
Strategies for extracting structural information from 2D IR spectroscopy of amyloid: application to islet amyloid polypeptide. J Phys Chem B (2009) 1.16
Efficient microwave-assisted synthesis of human islet amyloid polypeptide designed to facilitate the specific incorporation of labeled amino acids. Org Lett (2010) 1.13
How pH opens a H+ channel: the gating mechanism of influenza A M2. Structure (2005) 1.11
Generation and characterization of phase and amplitude shaped femtosecond mid-IR pulses. Opt Express (2006) 1.09
Stable and metastable states of human amylin in solution. Biophys J (2010) 1.08
Two-dimensional infrared spectroscopy provides evidence of an intermediate in the membrane-catalyzed assembly of diabetic amyloid. J Phys Chem B (2009) 1.07
Convergence of experimental, computational and evolutionary approaches predicts the presence of a tetrameric form for CD3-zeta. J Mol Biol (2002) 1.05
Solution structures of rat amylin peptide: simulation, theory, and experiment. Biophys J (2010) 1.04
Structural disorder of the CD3zeta transmembrane domain studied with 2D IR spectroscopy and molecular dynamics simulations. J Phys Chem B (2006) 1.04
DNA vibrational coupling revealed with two-dimensional infrared spectroscopy: insight into why vibrational spectroscopy is sensitive to DNA structure. J Phys Chem B (2006) 1.03
Deamidation accelerates amyloid formation and alters amylin fiber structure. J Am Chem Soc (2012) 1.03
Two-dimensional IR spectroscopy and segmental 13C labeling reveals the domain structure of human γD-crystallin amyloid fibrils. Proc Natl Acad Sci U S A (2012) 1.02
Modeling the structure of the respiratory syncytial virus small hydrophobic protein by silent-mutation analysis of global searching molecular dynamics. Protein Sci (2003) 1.00
The sulfated triphenyl methane derivative acid fuchsin is a potent inhibitor of amyloid formation by human islet amyloid polypeptide and protects against the toxic effects of amyloid formation. J Mol Biol (2010) 1.00
Experimental measurement of the strength of a C alpha-H...O bond in a lipid bilayer. J Am Chem Soc (2004) 0.99
How do aminoadamantanes block the influenza M2 channel, and how does resistance develop? J Am Chem Soc (2011) 0.99
A highly unusual palindromic transmembrane helical hairpin formed by SARS coronavirus E protein. J Mol Biol (2004) 0.99
A structure for the trimeric MHC class II-associated invariant chain transmembrane domain. J Mol Biol (2002) 0.99
Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid and protein infrared spectra. J Am Chem Soc (2012) 0.99
Evidence for coupling between nitrile groups using DNA templates: a promising new method for monitoring structures with infrared spectroscopy. J Phys Chem B (2008) 0.98
Facile collection of two-dimensional electronic spectra using femtosecond pulse-shaping Technology. Opt Express (2007) 0.96
Quantification of transition dipole strengths using 1D and 2D spectroscopy for the identification of molecular structures via exciton delocalization: application to α-helices. J Chem Phys (2012) 0.95
Passively correcting phase drift in two-dimensional infrared spectroscopy. Opt Lett (2006) 0.94
Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy. Proc Natl Acad Sci U S A (2011) 0.94
Contribution of energy values to the analysis of global searching molecular dynamics simulations of transmembrane helical bundles. Biophys J (2002) 0.93
The Cys3-Cys4 loop of the hydrophobin EAS is not required for rodlet formation and surface activity. J Mol Biol (2008) 0.93
Controlling vibrational excitation with shaped mid-IR pulses. Phys Rev Lett (2007) 0.93
Syntaxin 1A modulates the voltage-gated L-type calcium channel (Ca(v)1.2) in a cooperative manner. J Biol Chem (2003) 0.92
Vibrational dynamics of ions in glass from fifth-order two-dimensional infrared spectroscopy. Phys Rev Lett (2005) 0.91
Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy. Proc Natl Acad Sci U S A (2014) 0.91
Monte Carlo estimation of the number of possible protein folds: effects of sampling bias and folds distributions. Proteins (2003) 0.90
Strength of a bifurcated H bond. Proc Natl Acad Sci U S A (2014) 0.88
C-deuterated alanine: a new label to study membrane protein structure using site-specific infrared dichroism. Biophys J (2002) 0.88
Detection of high levels of recombination generated during PCR amplification of RNA templates. Biotechniques (2006) 0.87
A trimerizing GxxxG motif is uniquely inserted in the severe acute respiratory syndrome (SARS) coronavirus spike protein transmembrane domain. Biochemistry (2006) 0.87
Amyloid fiber formation in human γD-Crystallin induced by UV-B photodamage. Biochemistry (2013) 0.86
Structural and sequence analysis of the human γD-crystallin amyloid fibril core using 2D IR spectroscopy, segmental 13C labeling, and mass spectrometry. J Am Chem Soc (2012) 0.86
Utilizing Lifetimes to Suppress Random Coil Features in 2D IR Spectra of Peptides. J Phys Chem Lett (2011) 0.86
Heterodyned fifth-order 2D-IR spectroscopy of the azide ion in an ionic glass. J Chem Phys (2005) 0.85
Transient 2D IR spectroscopy of charge injection in dye-sensitized nanocrystalline thin films. J Am Chem Soc (2009) 0.85
Signal enhancement and background cancellation in collinear two-dimensional spectroscopies. Opt Lett (2008) 0.85
How important are transmembrane helices of bitopic membrane proteins? Biochim Biophys Acta (2006) 0.84
A strongly absorbing class of non-natural labels for probing protein electrostatics and solvation with FTIR and 2D IR spectroscopies. J Phys Chem B (2013) 0.84
Genetic algorithm-based optimization of hydrophobicity tables. Bioinformatics (2005) 0.84
A model for the interaction between NF-kappa-B and ASPP2 suggests an I-kappa-B-like binding mechanism. Proteins (2009) 0.84
Quantitative analysis of influenza M2 channel blockers. Biochim Biophys Acta (2010) 0.83
Resistance characteristics of influenza to amino-adamantyls. Biochim Biophys Acta (2010) 0.83
Polarization shaping in the mid-IR and polarization-based balanced heterodyne detection with application to 2D IR spectroscopy. Opt Express (2009) 0.83
Disorder influence on linear dichroism analyses of smectic phases. Biophys J (2005) 0.83
Two-dimensional sum-frequency generation reveals structure and dynamics of a surface-bound peptide. J Am Chem Soc (2014) 0.83
Hydrogen/deuterium exchange of hydrophobic peptides in model membranes by electrospray ionization mass spectrometry. J Am Soc Mass Spectrom (2002) 0.83
Heterodyned fifth-order two-dimensional IR spectroscopy: third-quantum states and polarization selectivity. J Chem Phys (2005) 0.82
Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy. J Phys Chem Lett (2012) 0.82
Molecular determinants of the substrate specificity of the complement-initiating protease, C1r. J Biol Chem (2013) 0.81
Structure and dynamics of the influenza A M2 channel: a comparison of three structures. J Mol Model (2009) 0.81
Time-domain SFG spectroscopy using mid-IR pulse shaping: practical and intrinsic advantages. J Phys Chem B (2011) 0.81
Promiscuous binding in a selective protein: the bacterial Na+/H+ antiporter. PLoS One (2011) 0.81
Modeling sample disorder in site-specific dichroism studies of uniaxial systems. Biophys J (2004) 0.80
Extracting structural information from the polarization dependence of one- and two-dimensional sum frequency generation spectra. J Phys Chem A (2012) 0.80
Structure and dynamics of apical membrane antigen 1 from Plasmodium falciparum FVO. Biochemistry (2014) 0.80
General strategy for the bioorthogonal incorporation of strongly absorbing, solvation-sensitive infrared probes into proteins. J Phys Chem B (2014) 0.80
Photoreactive coating for high-contrast spatial patterning of microfluidic device wettability. Lab Chip (2008) 0.80
Characterization of the Na⁺/H⁺ antiporter from Yersinia pestis. PLoS One (2011) 0.80
pH-driven helix rotations in the influenza M2 H+ channel: a potential gating mechanism. Eur Biophys J (2009) 0.79
Interpreting DNA vibrational circular dichroism spectra using a coupling model from two-dimensional infrared spectroscopy. J Phys Chem B (2006) 0.79
Fully absorptive 3D IR spectroscopy using a dual mid-infrared pulse shaper. J Chem Phys (2013) 0.79
Site-specific orientation of an α-helical peptide ovispirin-1 from isotope-labeled SFG spectroscopy. J Phys Chem B (2013) 0.79
Mode selectivity with polarization shaping in the mid-IR. New J Phys (2009) 0.79