Expression, purification, crystallization and preliminary X-ray diffraction data of methylmalonate-semialdehyde dehydrogenase from Bacillus subtilis.

PubWeight™: 0.79‹?›

🔗 View Article (PMID 15272169)

Published in Acta Crystallogr D Biol Crystallogr on July 21, 2004

Authors

Hélène Dubourg1, Claire Stines-Chaumeil, Claude Didierjean, François Talfournier, Sophie Rahuel-Clermont, Guy Branlant, André Aubry

Author Affiliations

1: Laboratoire de Cristallographie et Modélisation des Matériaux Minéraux et Biologiques, UMR 7036 CNRS-UHP, Groupe Biocristallographie, Faculté des Sciences et Techniques, BP 239, 54506 Vandoeuvre-lès-Nancy, France.

Articles by these authors

The enzymology and biochemistry of methionine sulfoxide reductases. Biochim Biophys Acta (2005) 2.19

The methionine sulfoxide reductases: Catalysis and substrate specificities. Arch Biochem Biophys (2008) 1.85

The N-terminal domain of PILB from Neisseria meningitidis is a disulfide reductase that can recycle methionine sulfoxide reductases. J Biol Chem (2005) 1.56

Characterization of the methionine sulfoxide reductase activities of PILB, a probable virulence factor from Neisseria meningitidis. J Biol Chem (2002) 1.40

Extensive conformational sampling in a ternary electron transfer complex. Nat Struct Biol (2003) 1.17

Structure-function relationship of the chloroplastic glutaredoxin S12 with an atypical WCSYS active site. J Biol Chem (2009) 1.12

The first crystal structure of a thioacylenzyme intermediate in the ALDH family: new coenzyme conformation and relevance to catalysis. Biochemistry (2006) 1.12

A structural analysis of the catalytic mechanism of methionine sulfoxide reductase A from Neisseria meningitidis. J Mol Biol (2008) 1.10

Kinetic characterization of the chemical steps involved in the catalytic mechanism of methionine sulfoxide reductase A from Neisseria meningitidis. J Biol Chem (2003) 1.10

Evidence for the formation of a covalent thiosulfinate intermediate with peroxiredoxin in the catalytic mechanism of sulfiredoxin. J Biol Chem (2008) 1.08

Kinetic characterization of the catalytic mechanism of methionine sulfoxide reductase B from Neisseria meningitidis. Biochemistry (2004) 1.07

Structural and biochemical characterization of free methionine-R-sulfoxide reductase from Neisseria meningitidis. J Biol Chem (2010) 1.06

The three-dimensional structures of peptide methionine sulfoxide reductases: current knowledge and open questions. Biochim Biophys Acta (2005) 1.05

Functional and structural aspects of poplar cytosolic and plastidial type a methionine sulfoxide reductases. J Biol Chem (2006) 1.03

Crystal structure and solution NMR dynamics of a D (type II) peroxiredoxin glutaredoxin and thioredoxin dependent: a new insight into the peroxiredoxin oligomerism. Biochemistry (2005) 1.02

Thioredoxins and related proteins in photosynthetic organisms: molecular basis for thiol dependent regulation. Biochem Pharmacol (2002) 1.01

Arabidopsis chloroplastic glutaredoxin C5 as a model to explore molecular determinants for iron-sulfur cluster binding into glutaredoxins. J Biol Chem (2011) 1.00

Characterization of the amino acids from Neisseria meningitidis MsrA involved in the chemical catalysis of the methionine sulfoxide reduction step. J Biol Chem (2006) 1.00

Glutathione transferases of Phanerochaete chrysosporium: S-glutathionyl-p-hydroquinone reductase belongs to a new structural class. J Biol Chem (2010) 0.99

Evidence for a new sub-class of methionine sulfoxide reductases B with an alternative thioredoxin recognition signature. J Biol Chem (2004) 0.98

Crystal structures of a poplar thioredoxin peroxidase that exhibits the structure of glutathione peroxidases: insights into redox-driven conformational changes. J Mol Biol (2007) 0.96

Trapping of the thioacylglyceraldehyde-3-phosphate dehydrogenase intermediate from Bacillus stearothermophilus. Direct evidence for a flip-flop mechanism. J Biol Chem (2008) 0.96

ATP synthase oligomerization: from the enzyme models to the mitochondrial morphology. Int J Biochem Cell Biol (2012) 0.95

Crystal structure of two ternary complexes of phosphorylating glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus with NAD and D-glyceraldehyde 3-phosphate. J Biol Chem (2003) 0.94

Mechanistic characterization of the MSDH (methylmalonate semialdehyde dehydrogenase) from Bacillus subtilis. Biochem J (2006) 0.93

Catalytic mechanism of Sulfiredoxin from Saccharomyces cerevisiae passes through an oxidized disulfide sulfiredoxin intermediate that is reduced by thioredoxin. J Biol Chem (2009) 0.92

Methionine sulfoxide reductase B displays a high level of flexibility. J Mol Biol (2009) 0.92

Characterization of the amino acids from Neisseria meningitidis methionine sulfoxide reductase B involved in the chemical catalysis and substrate specificity of the reductase step. J Biol Chem (2007) 0.91

An atypical catalytic mechanism involving three cysteines of thioredoxin. J Biol Chem (2008) 0.90

Purification, crystallization and preliminary X-ray diffraction data of L7Ae sRNP core protein from Pyrococcus abyssii. Acta Crystallogr D Biol Crystallogr (2003) 0.90

Biochemical and thermodynamic characterization of mutated β1,4-galactosyltransferase 7 involved in the progeroid form of the Ehlers-Danlos syndrome. Biochem J (2010) 0.89

Characterization of a Phanerochaete chrysosporium glutathione transferase reveals a novel structural and functional class with ligandin properties. J Biol Chem (2012) 0.89

Control of duplex formation and columnar self-assembly with heterogeneous amide/urea macrocycles. Angew Chem Int Ed Engl (2009) 0.88

Stabilization and conformational isomerization of the cofactor during the catalysis in hydrolytic ALDHs. Chem Biol Interact (2008) 0.88

tert-Butyl (6S)-4-hydroxy-6-isobutyl-2-oxo-1,2,5,6-tetrahydropyridine-1-carboxylate and tert-butyl (4R,6S)-4-hydroxy-6-isobutyl-2-oxopiperidine-1-carboxylate. Acta Crystallogr C (2004) 0.86

Insights into the role of the metal binding site in methionine-R-sulfoxide reductases B. Protein Sci (2005) 0.85

Sphingobium sp. SYK-6 LigG involved in lignin degradation is structurally and biochemically related to the glutathione transferase ω class. FEBS Lett (2012) 0.85

The functional glycosyltransferase signature sequence of the human beta 1,3-glucuronosyltransferase is a XDD motif. J Biol Chem (2003) 0.84

Diversification of fungal specific class a glutathione transferases in saprotrophic fungi. PLoS One (2013) 0.84

Thermodynamic insights into the structural basis governing the donor substrate recognition by human beta1,4-galactosyltransferase 7. Biochem J (2009) 0.83

Solution structure and backbone dynamics of the reduced form and an oxidized form of E. coli methionine sulfoxide reductase A (MsrA): structural insight of the MsrA catalytic cycle. J Mol Biol (2006) 0.83

P but not R-axis interface is involved in cooperative binding of NAD on tetrameric phosphorylating glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus. J Mol Biol (2003) 0.83

Methylmalonate-semialdehyde dehydrogenase from Bacillus subtilis: substrate specificity and coenzyme A binding. J Biol Chem (2011) 0.83

Unprecedented chain-length-dependent conformational conversion between 11/9 and 18/16 helix in α/β-hybrid peptides. Angew Chem Int Ed Engl (2014) 0.83

Cyclic beta-peptoids. Org Lett (2008) 0.83

Atypical features of a Ure2p glutathione transferase from Phanerochaete chrysosporium. FEBS Lett (2013) 0.83

Characterization of the amino acids involved in substrate specificity of nonphosphorylating glyceraldehyde-3-phosphate dehydrogenase from Streptococcus mutans. J Biol Chem (2002) 0.82

Engineered mutated glutaredoxins mimicking peculiar plant class III glutaredoxins bind iron-sulfur centers and possess reductase activity. Biochem Biophys Res Commun (2010) 0.82

Evidence of the proximity of ATP synthase subunits 6 (a) in the inner mitochondrial membrane and in the supramolecular forms of Saccharomyces cerevisiae ATP synthase. J Biol Chem (2011) 0.82

Robust helix formation in a new family of oligoureas based on a constrained bicyclic building block. Angew Chem Int Ed Engl (2012) 0.82

Structural and enzymatic insights into Lambda glutathione transferases from Populus trichocarpa, monomeric enzymes constituting an early divergent class specific to terrestrial plants. Biochem J (2014) 0.82

Invariant Thr244 is essential for the efficient acylation step of the non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase from Streptococcus mutans. Biochem J (2006) 0.81

Mixed oligoureas based on constrained bicyclic and acyclic β-amino acids derivatives: on the significance of the subunit configuration for folding. Chemistry (2013) 0.81

Redox based anti-oxidant systems in plants: biochemical and structural analyses. Biochim Biophys Acta (2008) 0.81

A new role for Escherichia coli DsbC protein in protection against oxidative stress. J Biol Chem (2014) 0.81

(S)-ABOC: a rigid bicyclic β-amino acid as turn inducer. Org Lett (2012) 0.80

Structural investigation of "cis" and "trans" vinylogous peptides: cis-vinylog turn in folded cis-vinylogous peptides, an excellent mimic of the natural beta-turn. J Org Chem (2005) 0.80

Thermal destabilization of non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase from Streptococcus mutans upon phosphate binding in the active site. J Biol Chem (2005) 0.80

Characterization of the amino acids involved in substrate specificity of methionine sulfoxide reductase A. J Biol Chem (2007) 0.80

Crystallization and preliminary X-ray studies of the glutaredoxin from poplar in complex with glutathione. Acta Crystallogr D Biol Crystallogr (2003) 0.80

The rate-limiting step of sulfiredoxin is associated with the transfer of the γ-phosphate of ATP to the sulfinic acid of overoxidized typical 2-Cys peroxiredoxins. FEBS Lett (2011) 0.80

Hell's Gate globin I: an acid and thermostable bacterial hemoglobin resembling mammalian neuroglobin. FEBS Lett (2011) 0.80

Benzophenone photophore flexibility and proximity: molecular and crystal-state structure of a Bpa-containing trichogin dodecapeptide analogue. Chembiochem (2004) 0.79

Retinoic acid biosynthesis catalyzed by retinal dehydrogenases relies on a rate-limiting conformational transition associated with substrate recognition. Chem Biol Interact (2012) 0.79

Self-assembling organic nanotubes from enantiopure cyclo-N,N'-linked oligoureas: design, synthesis, and crystal structure. Angew Chem Int Ed Engl (2002) 0.79

The X-ray structure of the N-terminal domain of PILB from Neisseria meningitidis reveals a thioredoxin-fold. J Mol Biol (2006) 0.79

Designing a highly active soluble PQQ-glucose dehydrogenase for efficient glucose biosensors and biofuel cells. Biochem Biophys Res Commun (2010) 0.79

Catalytic properties of a bacterial acylating acetaldehyde dehydrogenase: evidence for several active oligomeric states and coenzyme A activation upon binding. Chem Biol Interact (2012) 0.78

Thioredoxin 2 from Escherichia coli is not involved in vivo in the recycling process of methionine sulfoxide reductase activities. FEBS Lett (2011) 0.78

Solution structure and dynamics of the reduced and oxidized forms of the N-terminal domain of PilB from Neisseria meningitidis. Biochemistry (2008) 0.78

Formation of the complex between DsbD and PilB N-terminal domains from Neisseria meningitidis necessitates an adaptability of nDsbD. Structure (2009) 0.78

Thermal unfolding used as a probe to characterize the intra- and intersubunit stabilizing interactions in phosphorylating D-glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus. Biochemistry (2002) 0.77

The canonical helix of urea oligomers at atomic resolution: insights into folding-induced axial organization. Angew Chem Int Ed Engl (2010) 0.77

Misfolded forms of glyceraldehyde-3-phosphate dehydrogenase interact with GroEL and inhibit chaperonin-assisted folding of the wild-type enzyme. Protein Sci (2005) 0.77

Evidence that glutathione and the glutathione system efficiently recycle 1-cys sulfiredoxin in vivo. Antioxid Redox Signal (2015) 0.76

Cyclic α,β-tetrapeptoids: sequence-dependent cyclization and conformational preference. Org Lett (2013) 0.76

Adenine binding mode is a key factor in triggering the early release of NADH in coenzyme A-dependent methylmalonate semialdehyde dehydrogenase. J Biol Chem (2012) 0.76

Solution structure and backbone dynamics of the cysteine 103 to serine mutant of the N-terminal domain of DsbD from Neisseria meningitidis. Biochemistry (2008) 0.76

Switching an O2 sensitive glucose oxidase bioelectrode into an almost insensitive one by cofactor redesign. Chem Commun (Camb) (2014) 0.76