Published in J Comput Biol on January 01, 2004
Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints. Prog Nucl Magn Reson Spectrosc (2009) 0.87
Contact replacement for NMR resonance assignment. Bioinformatics (2008) 0.86
Combining automated peak tracking in SAR by NMR with structure-based backbone assignment from 15N-NOESY. BMC Bioinformatics (2012) 0.83
Graphical interpretation of Boolean operators for protein NMR assignments. J Biomol NMR (2008) 0.83
Robust structure-based resonance assignment for functional protein studies by NMR. J Biomol NMR (2009) 0.82
NOEnet--use of NOE networks for NMR resonance assignment of proteins with known 3D structure. Bioinformatics (2008) 0.79
Solving nucleic acid structures by molecular replacement: examples from group II intron studies. Acta Crystallogr D Biol Crystallogr (2013) 0.78
Backbone resonance assignment and order tensor estimation using residual dipolar couplings. J Biomol NMR (2011) 0.78
Deuterated protein folds obtained directly from unassigned nuclear overhauser effect data. J Am Chem Soc (2008) 0.78
Structure-oriented methods for protein NMR data analysis. Prog Nucl Magn Reson Spectrosc (2010) 0.75
HASH: a program to accurately predict protein Hα shifts from neighboring backbone shifts. J Biomol NMR (2012) 0.75
Allosteric inhibition of the protein-protein interaction between the leukemia-associated proteins Runx1 and CBFbeta. Chem Biol (2007) 1.44
The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding. Bioinformatics (2009) 1.24
Rapid protein global fold determination using ultrasparse sampling, high-dynamic range artifact suppression, and time-shared NOESY. J Am Chem Soc (2012) 1.11
A structure-based approach for mapping adverse drug reactions to the perturbation of underlying biological pathways. PLoS One (2010) 1.10
Exact solutions for internuclear vectors and backbone dihedral angles from NH residual dipolar couplings in two media, and their application in a systematic search algorithm for determining protein backbone structure. J Biomol NMR (2004) 1.08
High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations. J Biomol NMR (2009) 0.98
An expectation/maximization nuclear vector replacement algorithm for automated NMR resonance assignments. J Biomol NMR (2004) 0.95
A polynomial-time algorithm for de novo protein backbone structure determination from nuclear magnetic resonance data. J Comput Biol (2006) 0.92
Structure-based protein NMR assignments using native structural ensembles. J Biomol NMR (2008) 0.89
Virtual decoy sets for molecular docking benchmarks. J Chem Inf Model (2011) 0.88
Phase-independent rhythmic analysis of genome-wide expression patterns. J Comput Biol (2003) 0.88
Protein loop closure using orientational restraints from NMR data. Proteins (2011) 0.86
An efficient and accurate algorithm for assigning nuclear overhauser effect restraints using a rotamer library ensemble and residual dipolar couplings. Proc IEEE Comput Syst Bioinform Conf (2005) 0.86
Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data. J Biomol NMR (2011) 0.85
A maximum entropy algorithm for rhythmic analysis of genome-wide expression patterns. Proc IEEE Comput Soc Bioinform Conf (2002) 0.85
A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data. J Comput Biol (2011) 0.82
Analysis of a systematic search-based algorithm for determining protein backbone structure from a minimum number of residual dipolar couplings. Proc IEEE Comput Syst Bioinform Conf (2004) 0.80
A data-driven, systematic search algorithm for structure determination of denatured or disordered proteins. Comput Syst Bioinformatics Conf (2006) 0.79
Highly selective azadipeptide nitrile inhibitors for cathepsin K: design, synthesis and activity assays. Org Biomol Chem (2013) 0.79
3D structural homology detection via unassigned residual dipolar couplings. Proc IEEE Comput Soc Bioinform Conf (2003) 0.79
Applying medicinal chemistry transformations and multiparameter optimization to guide the search for high-quality leads and candidates. J Chem Inf Model (2011) 0.79
High-throughput 3D structural homology detection via NMR resonance assignment. Proc IEEE Comput Syst Bioinform Conf (2004) 0.78
Highly selective aza-nitrile inhibitors for cathepsin K, structural optimization and molecular modeling. Org Biomol Chem (2013) 0.78
High-throughput inference of protein-protein interfaces from unassigned NMR data. Bioinformatics (2005) 0.76
Normalizing molecular docking rankings using virtually generated decoys. J Chem Inf Model (2011) 0.76
A geometric clustering algorithm with applications to structural data. J Comput Biol (2014) 0.76
HASH: a program to accurately predict protein Hα shifts from neighboring backbone shifts. J Biomol NMR (2012) 0.75
An algebraic geometry approach to protein structure determination from NMR data. Proc IEEE Comput Syst Bioinform Conf (2005) 0.75
Predicting multiple ligand binding modes using self-consistent pharmacophore hypotheses. J Chem Inf Model (2009) 0.75