PubRank

James Taylor

Author PubWeight™ 336.74‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007 75.09
2 Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 2010 39.63
3 Galaxy: a platform for interactive large-scale genome analysis. Genome Res 2005 35.75
4 Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 2004 24.40
5 Galaxy: a web-based genome analysis tool for experimentalists. Curr Protoc Mol Biol 2010 17.00
6 Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences. Genome Res 2005 7.09
7 Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res 2007 7.05
8 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Res 2007 6.42
9 Architectural protein subclasses shape 3D organization of genomes during lineage commitment. Cell 2013 6.37
10 A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res 2007 5.97
11 Genome analysis of the platypus reveals unique signatures of evolution. Nature 2008 5.74
12 Manipulation of FASTQ data with Galaxy. Bioinformatics 2010 5.67
13 An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol 2012 4.15
14 Lactate dehydrogenase as a biomarker of hemolysis-associated nitric oxide resistance, priapism, leg ulceration, pulmonary hypertension, and death in patients with sickle cell disease. Blood 2005 3.98
15 Galaxy CloudMan: delivering cloud compute clusters. BMC Bioinformatics 2010 3.77
16 Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat. Genome Res 2004 3.53
17 Next-generation sequencing data interpretation: enhancing reproducibility and accessibility. Nat Rev Genet 2012 3.29
18 Ten simple rules for reproducible computational research. PLoS Comput Biol 2013 3.06
19 Windshield splatter analysis with the Galaxy metagenomic pipeline. Genome Res 2009 3.04
20 Dissemination of scientific software with Galaxy ToolShed. Genome Biol 2014 2.34
21 Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Nature 2005 2.27
22 Harnessing cloud computing with Galaxy Cloud. Nat Biotechnol 2011 2.19
23 The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genet 2011 2.16
24 Dynamics of mitochondrial heteroplasmy in three families investigated via a repeatable re-sequencing study. Genome Biol 2011 2.16
25 [The quality of information available on the internet about aortic aneurysm and its endovascular treatment]. Rev Esp Cardiol 2011 2.09
26 Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration. Genome Res 2011 2.07
27 Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1. Nucleic Acids Res 2009 1.76
28 Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data. Genome Res 2007 1.75
29 Experimental validation of predicted mammalian erythroid cis-regulatory modules. Genome Res 2006 1.71
30 Prevalence of asymptomatic incidental aneurysms: review of 4568 arteriograms. J Neurosurg 2002 1.70
31 The anatomy of successful computational biology software. Nat Biotechnol 2013 1.68
32 Interventions for preventing delirium in hospitalised non-ICU patients. Cochrane Database Syst Rev 2016 1.66
33 Genomic approaches towards finding cis-regulatory modules in animals. Nat Rev Genet 2012 1.65
34 Effectiveness of educational materials designed to change knowledge and behaviors regarding crying and shaken-baby syndrome in mothers of newborns: a randomized, controlled trial. Pediatrics 2009 1.58
35 Gene expression profiling in human preadipocytes and adipocytes by microarray analysis. J Nutr 2004 1.57
36 Dark matter maps reveal cosmic scaffolding. Nature 2007 1.57
37 Intimo-intimal intussusception of the aorta. Ann Thorac Surg 2006 1.53
38 Integrating diverse databases into an unified analysis framework: a Galaxy approach. Database (Oxford) 2011 1.47
39 The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. J Biomed Semantics 2013 1.44
40 Making whole genome multiple alignments usable for biologists. Bioinformatics 2011 1.36
41 Cerebrovascular disease associated with sickle cell pulmonary hypertension. Am J Hematol 2006 1.35
42 Web-based visual analysis for high-throughput genomics. BMC Genomics 2013 1.31
43 Semi-automated image analysis for the assessment of megafaunal densities at the Arctic deep-sea observatory HAUSGARTEN. PLoS One 2012 1.31
44 Using Galaxy to perform large-scale interactive data analyses. Curr Protoc Bioinformatics 2012 1.22
45 Improvement in hemolysis and pulmonary arterial systolic pressure in adult patients with sickle cell disease during treatment with hydroxyurea. Am J Hematol 2009 1.20
46 Sickle cell disease and pulmonary hypertension in Africa: a global perspective and review of epidemiology, pathophysiology, and management. Am J Hematol 2008 1.16
47 Transverse myelitis as the first manifestation of systemic lupus erythematosus or lupus-like disease: good functional outcome and relevance of antiphospholipid antibodies. J Rheumatol 2004 1.16
48 Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy. Curr Protoc Bioinformatics 2012 1.13
49 Meta-analysis of 2040 sickle cell anemia patients: BCL11A and HBS1L-MYB are the major modifiers of HbF in African Americans. Blood 2012 1.12
50 Comparative analyses of bidirectional promoters in vertebrates. BMC Bioinformatics 2008 1.10
51 NGS analyses by visualization with Trackster. Nat Biotechnol 2012 1.04
52 Hematologic, biochemical, and cardiopulmonary effects of L-arginine supplementation or phosphodiesterase 5 inhibition in patients with sickle cell disease who are on hydroxyurea therapy. Eur J Haematol 2008 1.04
53 Teaching clinical problem solving: a preceptor's guide. Am J Health Syst Pharm 2012 1.02
54 A comparison of two methods to determine the presence of high-risk HPV cervical infections. Am J Clin Pathol 2008 1.00
55 Detection of bocavirus in saliva of children with and without respiratory illness. J Clin Microbiol 2009 0.99
56 The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J Biomed Semantics 2011 0.99
57 MR angiography of aortoiliac occlusive disease: a phase III study of the safety and effectiveness of the blood-pool contrast agent MS-325. Radiology 2005 0.98
58 Web-based analysis of (Epi-) genome data using EpiGRAPH and Galaxy. Methods Mol Biol 2010 0.98
59 Short course of systemic corticosteroids in sinonasal polyposis: a double-blind, randomized, placebo-controlled trial with evaluation of outcome measures. J Allergy Clin Immunol 2006 0.97
60 Integrative approach reveals composition of endoparasitoid wasp venoms. PLoS One 2013 0.97
61 Association of vaccine-related attitudes and beliefs between parents and health care providers. Vaccine 2013 0.97
62 Transcription regulation of restriction-modification system Esp1396I. Nucleic Acids Res 2009 0.96
63 Achieving reproducible performance of electrochemical, folding aptamer-based sensors on microelectrodes: challenges and prospects. Anal Chem 2014 0.94
64 Vaccine knowledge and practices of primary care providers of exempt vs. vaccinated children. Hum Vaccin 2008 0.93
65 Parasitoid wasp venom SERCA regulates Drosophila calcium levels and inhibits cellular immunity. Proc Natl Acad Sci U S A 2013 0.91
66 Measurement of bone defects adjacent to acetabular components of hip replacement. Clin Orthop Relat Res 2003 0.90
67 Genetic determinants of haemolysis in sickle cell anaemia. Br J Haematol 2013 0.89
68 Endovascular management of splenic artery aneurysms. Rev Port Cir Cardiotorac Vasc 2014 0.88
69 Spiritual needs of persons with advanced cancer. Am J Hosp Palliat Care 2007 0.88
70 Leveraging the national cyberinfrastructure for biomedical research. J Am Med Inform Assoc 2013 0.87
71 Coil embolization of persistent false lumen after stent graft repair of type B aortic dissection. J Vasc Surg 2011 0.87
72 Efficacy of the CathRite system to guide bedside placement of peripherally inserted central venous catheters in critically ill patients: a pilot study. Crit Care Resusc 2007 0.87
73 Chemical synthesis and biological evaluation of a NAD(P)H:quinone oxidoreductase-1 targeted tripartite quinone drug delivery system. Mol Cancer Ther 2007 0.86
74 Predicting prolonged dysphagia in acute stroke: the Royal Adelaide Prognostic Index for Dysphagic Stroke (RAPIDS). Dysphagia 2005 0.85
75 CloudMan as a platform for tool, data, and analysis distribution. BMC Bioinformatics 2012 0.84
76 Impacts of blending ground, surface, and saline waters on lead release in drinking water distribution systems. Water Res 2006 0.83
77 A method for generating sticky-end PCR products which facilitates unidirectional cloning and the one-step assembly of complex DNA constructs. Plasmid 2008 0.83
78 Phylogenomic resources at the UCSC Genome Browser. Methods Mol Biol 2008 0.83
79 Optical coherence tomography using a continuous-wave, high-power, Raman continuum light source. Opt Express 2004 0.82
80 Treatment approaches to prosthetic joint infections: results of an Emerging Infections Network survey. Diagn Microbiol Infect Dis 2009 0.81
81 Shotgun wound and pellet embolism to the intracranial carotid artery. J Vasc Surg 2011 0.81
82 Phytoestrogen exposure is associated with circulating sex hormone levels in postmenopausal women and interact with ESR1 and NR1I2 gene variants. Cancer Epidemiol Biomarkers Prev 2007 0.80
83 Acute exposure to high dose γ-radiation results in transient activation of bone lining cells. Bone 2013 0.80
84 Open pipelines for integrated tumor genome profiles reveal differences between pancreatic cancer tumors and cell lines. Cancer Med 2015 0.80
85 Cranberry phytochemicals inhibit glycation of human hemoglobin and serum albumin by scavenging reactive carbonyls. Food Funct 2011 0.80
86 The HCV non-nucleoside inhibitor Tegobuvir utilizes a novel mechanism of action to inhibit NS5B polymerase function. PLoS One 2012 0.79
87 Breast cancer pseudometastasis in a sentinel lymph node with cytokeratin-positive debris. Breast J 2005 0.78
88 Elevated serum concentrations of troponin T in acute stroke: what do they mean? J Clin Neurosci 2009 0.77
89 Hepatic vein stenting for recurrent ascites in polycystic liver and kidney disease. Nephrol Dial Transplant 2005 0.77
90 Randomized controlled trial of accelerated resolution therapy (ART) for symptoms of combat-related post-traumatic stress disorder (PTSD). Mil Med 2013 0.77
91 Internet-based knowledge management database for children and adults with epilepsy: a possible model project for evidence-based medicine in the future. Seizure 2007 0.76
92 Patch Testing for Evaluation of Hypersensitivity to Implanted Metal Devices: A Perspective From the American Contact Dermatitis Society. Dermatitis 2016 0.76
93 Bromocriptine: its place in type 2 diabetes Tx. J Fam Pract 2011 0.76
94 The histopathologic spectrum of cryofibrinogenemia in four anatomic sites. Skin, lung, muscle, and kidney. Am J Clin Pathol 2003 0.76
95 Toward the commoditization of translational genomic research: Design and implementation features of the Galaxy genomic workbench. Summit on Translat Bioinforma 2008 0.75
96 The DNA60IFX contest. Genome Biol 2013 0.75
97 Commentary: aortic false lumen thrombosis and remodeling: the paradigm for endovascular repair of aortic dissection. J Endovasc Ther 2012 0.75
98 Retrograde approach for endovascular salvage of an infrapopliteal vein bypass. Ann Vasc Surg 2012 0.75
99 Immunohistochemistry cocktails are here to stay: Center of Medicare and Medicaid Services should revise its new reimbursement policy. Appl Immunohistochem Mol Morphol 2012 0.75
100 Three Cases of Umbilical Hemorrhage Occurring in the Same Family. Bristol Med Chir J (1883) 1893 0.75
101 Post-surgical allergic contact dermatitis to compound tincture of benzoin and association with reactions to fragrances and essential oils. Dermatitis 2014 0.75
102 Live three-dimensional transthoracic echocardiographic demonstration of coronary artery to pulmonary artery fistula. Am J Geriatr Cardiol 2005 0.75
103 Endovascular approach in a secondary arterio-ureteral fistula. Vasa 2013 0.75
104 Parental satisfaction with paediatric care, triage and waiting times. Emerg Med Australas 2014 0.75
105 Improved sensitivity of point of care troponin I values using reporting to below the 99 th percentile of normals. Clin Biochem 2013 0.75
106 A suspected case of Abruzzo-Erickson syndrome. Cleft Palate Craniofac J 2004 0.75
107 Access to medications and intermediate markers of health outcomes of a clinic population of patients with diabetes. J Miss State Med Assoc 2008 0.75
108 Recent diabetes issues affecting the primary care clinician. South Med J 2011 0.75
109 A new glucose monitoring option. J Fam Pract 2010 0.75
110 Long-term follow-up of total abdominal wall reconstruction for prune belly syndrome. Plast Reconstr Surg 2012 0.75
111 Lessons from a 17-year radiosurgery experience at the Royal Adelaide Hospital. Int J Radiat Oncol Biol Phys 2010 0.75
112 Immunohistochemistry cocktails are here to stay: Center for Medicare and Medicaid Services should revise its new reimbursement policy. Am J Clin Pathol 2012 0.75
113 The leaders' views. Not just black and white. Health Serv J 2014 0.75
114 Combined influence of membrane surface properties and feed water qualities on RO/NF mass transfer, a pilot study. Water Res 2005 0.75