Published in Genomics on October 01, 2004
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Res (2008) 10.10
Sequence biases in large scale gene expression profiling data. Nucleic Acids Res (2006) 3.83
DeepSAGE--digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples. Nucleic Acids Res (2006) 2.66
A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells. Proc Natl Acad Sci U S A (2005) 2.35
Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips. BMC Genomics (2005) 1.91
Regulation of glycan structures in animal tissues: transcript profiling of glycan-related genes. J Biol Chem (2008) 1.55
High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer. PLoS One (2009) 1.19
Investigation of known genetic risk factors for primary open angle glaucoma in two populations of African ancestry. Invest Ophthalmol Vis Sci (2013) 1.10
Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies. BMC Genomics (2009) 1.08
A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE). BMC Dev Biol (2007) 1.06
Identification of transcripts with enriched expression in the developing and adult pancreas. Genome Biol (2008) 1.06
Too much data, but little inter-changeability: a lesson learned from mining public data on tissue specificity of gene expression. Biol Direct (2006) 1.01
Validation of oligoarrays for quantitative exploration of the transcriptome. BMC Genomics (2008) 0.99
Serial analysis of gene expression (SAGE) in normal human trabecular meshwork. Mol Vis (2011) 0.90
Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription. BMC Genomics (2008) 0.88
A comparative analysis of the information content in long and short SAGE libraries. BMC Bioinformatics (2006) 0.86
Transcriptome profiling of genes involved in neural tube closure during human embryonic development using long serial analysis of gene expression (long-SAGE). Birth Defects Res A Clin Mol Teratol (2012) 0.80
Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus. BMC Genomics (2009) 0.77
A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity. BMC Genomics (2014) 0.75
Methodology optimizing SAGE library tag-to-gene mapping: application to Leishmania. BMC Res Notes (2012) 0.75
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature (2008) 26.78
Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia. Science (2008) 20.68
Effect of early versus deferred antiretroviral therapy for HIV on survival. N Engl J Med (2009) 19.90
Mapping autism risk loci using genetic linkage and chromosomal rearrangements. Nat Genet (2007) 14.05
BFAST: an alignment tool for large scale genome resequencing. PLoS One (2009) 7.48
A hypermutation phenotype and somatic MSH6 mutations in recurrent human malignant gliomas after alkylator chemotherapy. Cancer Res (2006) 6.91
Mutations in CIC and FUBP1 contribute to human oligodendroglioma. Science (2011) 3.49
Distinct transcription profiles of primary and secondary glioblastoma subgroups. Cancer Res (2006) 3.41
Meta-analysis of genome-wide association studies of attention-deficit/hyperactivity disorder. J Am Acad Child Adolesc Psychiatry (2010) 3.13
U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line. PLoS Genet (2010) 2.99
Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing. Proc Natl Acad Sci U S A (2003) 2.64
Evidence for sex-specific risk alleles in autism spectrum disorder. Am J Hum Genet (2004) 2.24
Gain-of-function mutations in TRPV4 cause autosomal dominant brachyolmia. Nat Genet (2008) 2.24
Home environmental intervention in inner-city asthma: a randomized controlled clinical trial. Ann Allergy Asthma Immunol (2005) 2.20
Mortality in patients hospitalized for asthma exacerbations in the United States. Am J Respir Crit Care Med (2006) 2.07
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol (2014) 1.95
Local alignment of two-base encoded DNA sequence. BMC Bioinformatics (2009) 1.94
Mutations in PYCR1 cause cutis laxa with progeroid features. Nat Genet (2009) 1.89
Lethal skeletal dysplasia in mice and humans lacking the golgin GMAP-210. N Engl J Med (2010) 1.81
The effect of a smoke-free law on restaurant business in South Australia. Aust N Z J Public Health (2002) 1.80
SeqWare Query Engine: storing and searching sequence data in the cloud. BMC Bioinformatics (2010) 1.72
Ciliary abnormalities due to defects in the retrograde transport protein DYNC2H1 in short-rib polydactyly syndrome. Am J Hum Genet (2009) 1.59
Improving the efficiency of genomic loci capture using oligonucleotide arrays for high throughput resequencing. BMC Genomics (2009) 1.55
CEP41 is mutated in Joubert syndrome and is required for tubulin glutamylation at the cilium. Nat Genet (2012) 1.54
Indoor exposures to air pollutants and allergens in the homes of asthmatic children in inner-city Baltimore. Environ Res (2005) 1.51
Do high-resolution CT findings of usual interstitial pneumonitis obviate lung biopsy? Views of pulmonologists. Respiration (2005) 1.51
Abnormal DNA methylation of CD133 in colorectal and glioblastoma tumors. Cancer Res (2008) 1.51
Pretest risk assessment in suspected acute pulmonary embolism. Acad Radiol (2008) 1.44
Availability, requesting practices, and barriers to referral for high-resolution CT of the lungs: results of a survey of U.S. pulmonologists. Acad Radiol (2002) 1.39
Multiple self-healing squamous epithelioma is caused by a disease-specific spectrum of mutations in TGFBR1. Nat Genet (2011) 1.39
Meningioma transcript profiles reveal deregulated Notch signaling pathway. Cancer Res (2005) 1.33
Hospitalizations for tuberculosis in the United States in 2000: predictors of in-hospital mortality. Chest (2004) 1.29
The prevalence of rat allergen in inner-city homes and its relationship to sensitization and asthma morbidity. J Allergy Clin Immunol (2003) 1.25
CT pulmonary angiography is the first-line imaging test for acute pulmonary embolism: a survey of US clinicians. Acad Radiol (2006) 1.24
Loss of CHSY1, a secreted FRINGE enzyme, causes syndromic brachydactyly in humans via increased NOTCH signaling. Am J Hum Genet (2010) 1.24
The neurofibromatosis 2 tumor suppressor gene product, merlin, regulates human meningioma cell growth by signaling through YAP. Neoplasia (2008) 1.23
A recessive skeletal dysplasia, SEMD aggrecan type, results from a missense mutation affecting the C-type lectin domain of aggrecan. Am J Hum Genet (2008) 1.17
High density SNP association study of a major autism linkage region on chromosome 17. Hum Mol Genet (2007) 1.13
Repetitive sequence environment distinguishes housekeeping genes. Gene (2006) 1.12
Patient factors that physicians use to assign asthma treatment. Arch Intern Med (2007) 1.06
The Asthma Control and Communication Instrument: a clinical tool developed for ethnically diverse populations. J Allergy Clin Immunol (2008) 1.05
Notch activation is associated with tetraploidy and enhanced chromosomal instability in meningiomas. Neoplasia (2008) 1.01
Epigenetic silencing of the kinase tumor suppressor WNK2 is tumor-type and tumor-grade specific. Neuro Oncol (2008) 1.00
Molecular signatures define two main classes of meningiomas. Mol Cancer (2007) 0.98
Identification of gene markers associated with aggressive meningioma by filtering across multiple sets of gene expression arrays. J Neuropathol Exp Neurol (2011) 0.98
HER-2 gene amplification correlates with higher levels of angiogenesis and lower levels of hypoxia in primary breast tumors. Clin Cancer Res (2004) 0.97
An orthotopic skull base model of malignant meningioma. Brain Pathol (2007) 0.96
A genetic strategy to overcome the senescence of primary meningioma cell cultures. J Neurooncol (2006) 0.95
Are physician estimates of asthma severity less accurate in black than in white patients? J Gen Intern Med (2007) 0.94
c-Myc promoter activation in medulloblastoma. Cancer Res (2003) 0.93
Identification of tissue of origin in body fluid specimens using a gene expression microarray assay. Cancer Cytopathol (2011) 0.91
Patient factors used by pediatricians to assign asthma treatment. Pediatrics (2008) 0.90
Association between absence of epidermal growth factor receptor immunoreactivity and poor prognosis in patients with atypical meningioma. J Neurosurg (2007) 0.90
Mutations in IRX5 impair craniofacial development and germ cell migration via SDF1. Nat Genet (2012) 0.89
Expression of the hypoxia marker carbonic anhydrase 9 is associated with anaplastic phenotypes in meningiomas. Clin Cancer Res (2007) 0.88
A novel small molecule that selectively inhibits glioblastoma cells expressing EGFRvIII. Mol Cancer (2007) 0.87
Physician satisfaction with high-resolution CT services provided by radiologists: results of a nationwide survey of pulmonary subspecialists. AJR Am J Roentgenol (2003) 0.87
Unique patterns of metastases in common and rare types of malignancy. J Surg Oncol (2011) 0.86
Familial cortical myoclonus with a mutation in NOL3. Ann Neurol (2012) 0.86
Yes-associated protein 1 is activated and functions as an oncogene in meningiomas. Mol Cancer Res (2012) 0.86
Fatty acid synthase as a novel target for meningioma therapy. Neuro Oncol (2010) 0.86
Characterization of the global profile of genes expressed in cervical epithelium by Serial Analysis of Gene Expression (SAGE). BMC Genomics (2005) 0.85
Risk adjustment for hospital use using social security data: cross sectional small area analysis. BMJ (2002) 0.83
Complete cytoreduction offers longterm survival in patients with peritoneal carcinomatosis from appendiceal tumors of unfavorable histology. J Am Coll Surg (2009) 0.82
Simple computation of reaction-diffusion processes on point clouds. Proc Natl Acad Sci U S A (2013) 0.82
Gene expression profiles help identify the tissue of origin for metastatic brain cancers. Diagn Pathol (2010) 0.81
Utility of high-resolution CT for management of diffuse lung disease: results of a survey of U.S. pulmonary physicians. Acad Radiol (2003) 0.81
Reduced activity of CD13/aminopeptidase N (APN) in aggressive meningiomas is associated with increased levels of SPARC. Brain Pathol (2009) 0.80
Scanning systems and protocols used during imaging for acute pulmonary embolism: how much do our clinical colleagues know? Acad Radiol (2006) 0.80
Local alignment of generalized k-base encoded DNA sequence. BMC Bioinformatics (2010) 0.78
A glutamate receptor antagonist, S-4-carboxyphenylglycine (S-4-CPG), inhibits vasospasm after subarachnoid hemorrhage in haptoglobin 2-2 mice [corrected]. Neurosurgery (2013) 0.77
Bioinformatics. Introduction. Yale J Biol Med (2012) 0.75
Basal Ganglion Hemorrhage as Delayed Complication of Diethylene Glycol Ingestion. Am J Forensic Med Pathol (2017) 0.75
Molecular dynamics simulation of the response of a gas to a spherical piston: implications for sonoluminescence. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75
Paclitaxel-eluting versus bare-metal stents in acute ST elevation myocardial infarction (STEMI). Crit Pathw Cardiol (2008) 0.75
The economic impact of smoke-free policies on sales in restaurants and cafés in Victoria. Aust N Z J Public Health (2003) 0.75
Appendiceal cancer and peritoneal carcinomatosis: a report of 29 cases. Am Surg (2006) 0.75
Molecular dynamics of extreme mass segregation in a rapidly collapsing bubble. Phys Rev Lett (2008) 0.75