PubRank

Martin Tompa

Author PubWeight™ 52.53‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis. Mol Microbiol 2003 5.68
2 Finding motifs using random projections. J Comput Biol 2002 4.61
3 Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Res 2002 4.25
4 YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Res 2003 3.71
5 PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences. BMC Bioinformatics 2004 3.63
6 Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline. Nucleic Acids Res 2007 3.59
7 Discovery of novel transcription factor binding sites by statistical overrepresentation. Nucleic Acids Res 2002 3.30
8 FootPrinter: A program designed for phylogenetic footprinting. Nucleic Acids Res 2003 2.82
9 Algorithms for phylogenetic footprinting. J Comput Biol 2002 2.46
10 Evolutionarily conserved sequence elements that positively regulate IFN-gamma expression in T cells. Proc Natl Acad Sci U S A 2004 2.21
11 Discovery of regulatory elements in vertebrates through comparative genomics. Nat Biotechnol 2005 1.65
12 A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes. PLoS Comput Biol 2007 1.53
13 Measuring the accuracy of genome-size multiple alignments. Genome Biol 2007 1.50
14 Analysis of computational approaches for motif discovery. Algorithms Mol Biol 2006 1.34
15 Comparative assessment of methods for aligning multiple genome sequences. Nat Biotechnol 2010 1.03
16 MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes. Nucleic Acids Res 2006 1.03
17 Identification of the Treponema pallidum subsp. pallidum TP0092 (RpoE) regulon and its implications for pathogen persistence in the host and syphilis pathogenesis. J Bacteriol 2012 0.99
18 Meta-analysis of inter-species liver co-expression networks elucidates traits associated with common human diseases. PLoS Comput Biol 2009 0.99
19 Statistics of local multiple alignments. Bioinformatics 2005 0.93
20 Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution. J Mol Biol 2006 0.93
21 How accurately is ncRNA aligned within whole-genome multiple alignments? BMC Bioinformatics 2007 0.92
22 Quality control in manufacturing oligo arrays: a combinatorial design approach. J Comput Biol 2002 0.86
23 Following the 'tracks': Tramtrack69 regulates epithelial tube expansion in the Drosophila ovary through Paxillin, Dynamin, and the homeobox protein Mirror. Dev Biol 2013 0.85
24 TP0262 is a modulator of promoter activity of tpr Subfamily II genes of Treponema pallidum ssp. pallidum. Mol Microbiol 2009 0.83
25 Assessing the discordance of multiple sequence alignments. IEEE/ACM Trans Comput Biol Bioinform 2009 0.79
26 Algorithms for locating extremely conserved elements in multiple sequence alignments. BMC Bioinformatics 2009 0.77
27 Construction of optimal quality control for oligo arrays. Bioinformatics 2002 0.75