PubRank

Juan J de Pablo

Author PubWeight™ 118.52‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 A microfluidic system for large DNA molecule arrays. Anal Chem 2004 2.57
2 A single-molecule barcoding system using nanoslits for DNA analysis. Proc Natl Acad Sci U S A 2007 2.53
3 Density multiplication and improved lithography by directed block copolymer assembly. Science 2008 2.27
4 3-D microwell culture of human embryonic stem cells. Biomaterials 2006 1.77
5 Retinoic acid and bone morphogenetic protein signaling synergize to efficiently direct epithelial differentiation of human embryonic stem cells. Stem Cells 2007 1.71
6 Directed self-assembly of block copolymers for nanolithography: fabrication of isolated features and essential integrated circuit geometries. ACS Nano 2007 1.69
7 A coarse grain model for DNA. J Chem Phys 2007 1.68
8 Optimal allocation of replicas in parallel tempering simulations. J Chem Phys 2005 1.66
9 Endotoxin-induced structural transformations in liquid crystalline droplets. Science 2011 1.65
10 The microwell control of embryoid body size in order to regulate cardiac differentiation of human embryonic stem cells. Biomaterials 2009 1.46
11 Directed assembly of block copolymer blends into nonregular device-oriented structures. Science 2005 1.39
12 Two-dimensional infrared spectroscopy reveals the complex behaviour of an amyloid fibril inhibitor. Nat Chem 2012 1.39
13 Mechanical heterogeneities in model polymer glasses at small length scales. Phys Rev Lett 2004 1.39
14 Inhibition of human embryonic stem cell differentiation by mechanical strain. J Cell Physiol 2006 1.36
15 Molecular simulation study of phospholipid bilayers and insights of the interactions with disaccharides. Biophys J 2003 1.34
16 DNA dynamics in a microchannel. Phys Rev Lett 2003 1.29
17 2D IR line shapes probe ovispirin peptide conformation and depth in lipid bilayers. J Am Chem Soc 2010 1.25
18 Engineering the stem cell microenvironment. Biotechnol Prog 2007 1.23
19 TGFbeta/Activin/Nodal pathway in inhibition of human embryonic stem cell differentiation by mechanical strain. Biophys J 2008 1.22
20 Mechanism of IAPP amyloid fibril formation involves an intermediate with a transient β-sheet. Proc Natl Acad Sci U S A 2013 1.20
21 2DIR spectroscopy of human amylin fibrils reflects stable β-sheet structure. J Am Chem Soc 2011 1.20
22 Shear-induced migration in flowing polymer solutions: simulation of long-chain DNA in microchannels [corrected]. J Chem Phys 2004 1.18
23 Modulation of Wnt/β-catenin signaling in human embryonic stem cells using a 3-D microwell array. Biomaterials 2011 1.16
24 Cryopreservation of adherent human embryonic stem cells. Biotechnol Bioeng 2004 1.13
25 Directed differentiation of human embryonic stem cells to epidermal progenitors. Methods Mol Biol 2010 1.12
26 Ultrastable glasses from in silico vapour deposition. Nat Mater 2013 1.10
27 Stable and metastable states of human amylin in solution. Biophys J 2010 1.08
28 Influence of surfactant tail branching and organization on the orientation of liquid crystals at aqueous-liquid crystal interfaces. Langmuir 2005 1.07
29 Single nanoparticle tracking reveals influence of chemical functionality of nanoparticles on local ordering of liquid crystals and nanoparticle diffusion coefficients. Nano Lett 2009 1.07
30 Characterization of adsorbate-induced ordering transitions of liquid crystals within monodisperse droplets. Langmuir 2009 1.06
31 Polymer-solid contacts described by soft, coarse-grained models. Phys Chem Chem Phys 2011 1.06
32 Influence of confinement on the fragility of antiplasticized and pure polymer films. Phys Rev Lett 2006 1.06
33 Liquid crystal-based emulsions for synthesis of spherical and non-spherical particles with chemical patches. J Am Chem Soc 2013 1.05
34 A molecular view of vapor deposited glasses. J Chem Phys 2011 1.05
35 Fast computation of many-particle hydrodynamic and electrostatic interactions in a confined geometry. Phys Rev Lett 2007 1.04
36 Tuning polymer melt fragility with antiplasticizer additives. J Chem Phys 2007 1.01
37 An immersed boundary method for Brownian dynamics simulation of polymers in complex geometries: application to DNA flowing through a nanoslit with embedded nanopits. J Chem Phys 2012 0.99
38 Parallel β-sheet vibrational couplings revealed by 2D IR spectroscopy of an isotopically labeled macrocycle: quantitative benchmark for the interpretation of amyloid and protein infrared spectra. J Am Chem Soc 2012 0.99
39 Molecular simulation of the swelling of polyelectrolyte gels by monovalent and divalent counterions. J Chem Phys 2008 0.96
40 Molecular origins of DNA flexibility: sequence effects on conformational and mechanical properties. Phys Rev Lett 2011 0.95
41 The response of human embryonic stem cell-derived endothelial cells to shear stress. Biotechnol Bioeng 2008 0.95
42 Fast calculation of the density of states of a fluid by Monte Carlo simulations. Phys Rev Lett 2003 0.95
43 Molecular simulation of the reversible mechanical unfolding of proteins. J Chem Phys 2004 0.94
44 An experimentally-informed coarse-grained 3-Site-Per-Nucleotide model of DNA: structure, thermodynamics, and dynamics of hybridization. J Chem Phys 2013 0.94
45 Elongation and migration of single DNA molecules in microchannels using oscillatory shear flows. Lab Chip 2009 0.94
46 Molecular simulation study on the influence of dimethylsulfoxide on the structure of phospholipid bilayers. Biophys J 2003 0.94
47 Effects of trehalose on the phase behavior of DPPC-cholesterol unilamellar vesicles. Biochim Biophys Acta 2006 0.94
48 Confinement effects on the thermodynamics of protein folding: Monte Carlo simulations. Biophys J 2005 0.93
49 Entanglement network in nanoparticle reinforced polymers. J Chem Phys 2009 0.92
50 Phase equilibria of charge-, size-, and shape-asymmetric model electrolytes. Phys Rev Lett 2002 0.92
51 Cross-stream migration of flexible molecules in a nanochannel. Phys Rev Lett 2006 0.91
52 Human embryonic stem cell-derived keratinocytes exhibit an epidermal transcription program and undergo epithelial morphogenesis in engineered tissue constructs. Tissue Eng Part A 2010 0.91
53 Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy. Proc Natl Acad Sci U S A 2014 0.91
54 The effect of hydrodynamic interactions on the dynamics of DNA translocation through pores. J Chem Phys 2008 0.90
55 Thermodynamic stability of beta-peptide helices and the role of cyclic residues. Biophys J 2006 0.90
56 Modulating membrane properties: the effect of trehalose and cholesterol on a phospholipid bilayer. J Phys Chem B 2005 0.89
57 Measurement of the azimuthal anchoring energy of liquid crystals in contact with oligo(ethylene glycol)-terminated self-assembled monolayers supported on obliquely deposited gold films. Langmuir 2006 0.89
58 Structure and stability of a model three-helix-bundle protein on tailored surfaces. Proteins 2005 0.89
59 Model vapor-deposited glasses: growth front and composition effects. J Chem Phys 2013 0.88
60 Density of states-based molecular simulations. Annu Rev Chem Biomol Eng 2012 0.88
61 Effect of pH, counter ion, and phosphate concentration on the glass transition temperature of freeze-dried sugar-phosphate mixtures. Pharm Res 2004 0.88
62 Monte Carlo simulation of a coarse-grained model of polyelectrolyte networks. Phys Rev Lett 2003 0.88
63 Hierarchical assembly of nanoparticle superstructures from block copolymer-nanoparticle composites. Phys Rev Lett 2008 0.88
64 Generation and differentiation of human embryonic stem cell-derived keratinocyte precursors. Tissue Eng 2006 0.88
65 Characterization of the potential energy landscape of an antiplasticized polymer. Phys Rev E Stat Nonlin Soft Matter Phys 2007 0.87
66 Configurational temperature density of states simulations of proteins. Biophys J 2003 0.87
67 Phase behavior of freeze-dried phospholipid-cholesterol mixtures stabilized with trehalose. Biochim Biophys Acta 2005 0.87
68 Colloid-in-liquid crystal gels that respond to biomolecular interactions. Small 2013 0.87
69 Anisotropic nanoparticles immersed in a nematic liquid crystal: defect structures and potentials of mean force. Phys Rev E Stat Nonlin Soft Matter Phys 2006 0.86
70 Molecular plasticity of polymeric glasses in the elastic regime. Phys Rev E Stat Nonlin Soft Matter Phys 2008 0.86
71 Calculation of local mechanical properties of filled polymers. Phys Rev E Stat Nonlin Soft Matter Phys 2007 0.85
72 Electroporation of human embryonic stem cells: Small and macromolecule loading and DNA transfection. Biotechnol Prog 2006 0.85
73 Ordering of solid microparticles at liquid crystal-water interfaces. J Phys Chem B 2008 0.85
74 An entropic perspective of protein stability on surfaces. Biophys J 2008 0.85
75 Monte carlo simulation of coarse grain polymeric systems. Phys Rev Lett 2009 0.85
76 Local mechanical properties of polymeric nanocomposites. Phys Rev E Stat Nonlin Soft Matter Phys 2005 0.85
77 Characterization of the reversible interaction of pairs of nanoparticles dispersed in nematic liquid crystals. Langmuir 2009 0.84
78 Melting line of the Lennard-Jones system, infinite size, and full potential. J Chem Phys 2007 0.84
79 GNNQQNY--investigation of early steps during amyloid formation. Biophys J 2010 0.84
80 Mechanical stability of helical beta-peptides and a comparison of explicit and implicit solvent models. Biophys J 2008 0.83
81 Effects of 3D microwell culture on growth kinetics and metabolism of human embryonic stem cells. Biotechnol Appl Biochem 2012 0.83
82 Molecular propulsion: chemical sensing and chemotaxis of DNA driven by RNA polymerase. J Am Chem Soc 2009 0.83
83 Effect of proline mutations on the monomer conformations of amylin. Biophys J 2013 0.83
84 A coarse-grain three-site-per-nucleotide model for DNA with explicit ions. J Chem Phys 2011 0.83
85 Colloid-in-liquid crystal gels formed via spinodal decomposition. Soft Matter 2014 0.82
86 Molecular dynamics simulation of discontinuous volume phase transitions in highly-charged crosslinked polyelectrolyte networks with explicit counterions in good solvent. J Chem Phys 2005 0.82
87 Fivefold symmetry as an inhibitor to hard-sphere crystallization. Phys Rev E Stat Nonlin Soft Matter Phys 2011 0.82
88 Direct calculation of solid-liquid equilibria from density-of-states Monte Carlo simulations. J Chem Phys 2005 0.82
89 Free volume and finite-size effects in a polymer glass under stress. Phys Rev Lett 2007 0.82
90 Tethered DNA dynamics in shear flow. J Chem Phys 2009 0.81
91 Investigation of transition States in bulk and freestanding film polymer glasses. Phys Rev Lett 2004 0.81
92 Swelling and collapse of polyelectrolyte gels in equilibrium with monovalent and divalent electrolyte solutions. J Chem Phys 2009 0.81
93 Effect of trehalose on the interaction of Alzheimer's Aβ-peptide and anionic lipid monolayers. Biochim Biophys Acta 2010 0.81
94 Interactions between spherical colloids mediated by a liquid crystal: a molecular simulation and mesoscale study. J Chem Phys 2004 0.81
95 Graphoepitaxial assembly of asymmetric ternary blends of block copolymers and homopolymers. Nanotechnology 2010 0.81
96 Nanoparticles in nematic liquid crystals: interactions with nanochannels. J Chem Phys 2007 0.81
97 N log N method for hydrodynamic interactions of confined polymer systems: Brownian dynamics. J Chem Phys 2006 0.80
98 α-helix to β-hairpin transition of human amylin monomer. J Chem Phys 2013 0.80
99 Improved simulation method for the calculation of the elastic constants of crystalline and amorphous systems using strain fluctuations. Phys Rev E Stat Nonlin Soft Matter Phys 2003 0.80
100 Three-dimensional directed assembly of block copolymers together with two-dimensional square and rectangular nanolithography. Adv Mater 2011 0.79
101 Association of helical beta-peptides and their aggregation behavior from the potential of mean force in explicit solvent. Biophys J 2009 0.79
102 Directed copolymer assembly on chemical substrate patterns: a phenomenological and single-chain-in-mean-field simulations study of the influence of roughness in the substrate pattern. Langmuir 2007 0.79
103 Dipole-induced self-assembly of helical beta-peptides. J Chem Phys 2008 0.79
104 Density-of-states Monte Carlo simulation of a binary glass. Phys Rev Lett 2004 0.79
105 Fabrication of complex three-dimensional nanostructures from self-assembling block copolymer materials on two-dimensional chemically patterned templates with mismatched symmetry. Phys Rev Lett 2006 0.78
106 Local dynamic mechanical properties in model free-standing polymer thin films. J Chem Phys 2005 0.78
107 Hydrodynamic effects on the translocation rate of a polymer through a pore. J Chem Phys 2009 0.78
108 Potential of mean force between a spherical particle suspended in a nematic liquid crystal and a substrate: sphere size effects. Phys Rev E Stat Nonlin Soft Matter Phys 2004 0.78
109 Block copolymer assembly on nanoscale patterns of polymer brushes formed by electrohydrodynamic jet printing. ACS Nano 2014 0.78
110 Effect of sugar-phosphate mixtures on the stability of DPPC membranes in dehydrated systems. Cryobiology 2004 0.78
111 Organized assemblies of colloids formed at the poles of micrometer-sized droplets of liquid crystal. Soft Matter 2014 0.78
112 Morphology of lamellae-forming block copolymer films between two orthogonal chemically nanopatterned striped surfaces. Phys Rev Lett 2012 0.77
113 Measuring liquid crystal elastic constants with free energy perturbations. Soft Matter 2014 0.77
114 The effect of the water/methane interface on methane hydrate cages: the potential of mean force and cage lifetimes. J Chem Phys 2008 0.77
115 Using localized surface plasmon resonances to probe the nanoscopic origins of adsorbate-driven ordering transitions of liquid crystals in contact with chemically functionalized gold nanodots. Nano Lett 2008 0.77
116 Revealing the interfacial self-assembly pathway of large-scale, highly-ordered, nanoparticle/polymer monolayer arrays at an air/water interface. Nano Lett 2013 0.77
117 Pattern dimensions and feature shapes of ternary blends of block copolymer and low molecular weight homopolymers directed to assemble on chemically nanopatterned surfaces. ACS Nano 2011 0.76
118 A molecular view of DNA-conjugated nanoparticle association energies. Soft Matter 2015 0.76
119 Dimerization of helical β-peptides in solution. Biophys J 2012 0.76
120 Antiplasticization and local elastic constants in trehalose and glycerol mixtures. J Chem Phys 2008 0.76
121 Interactions of liquid crystal-forming molecules with phospholipid bilayers studied by molecular dynamics simulations. Biophys J 2005 0.75
122 Isotropic-nematic phase transition in the Lebwohl-Lasher model from density of states simulations. J Chem Phys 2012 0.75
123 Modeling the polydomain-monodomain transition of liquid crystal elastomers. Phys Rev E Stat Nonlin Soft Matter Phys 2013 0.75
124 Pack it up, pack it in: unraveling H-NS mediated genome packaging. Biophys J 2013 0.75
125 Liquid-crystal mediated nanoparticle interactions and gel formation. J Chem Phys 2013 0.75
126 Platelet cryopreservation using a trehalose and phosphate formulation. Biotechnol Bioeng 2005 0.75
127 Modeling flows of confined nematic liquid crystals. J Chem Phys 2011 0.75
128 Simulations of theoretically informed coarse grain models of polymeric systems. Faraday Discuss 2010 0.75
129 Simulation of nonlinear shear rheology of dilute salt-free polyelectrolyte solutions. J Chem Phys 2007 0.75
130 Directed assembly of non-equilibrium ABA triblock copolymer morphologies on nanopatterned substrates. ACS Nano 2012 0.75
131 Influence of confinement on the vibrational density of states and the Boson peak in a polymer glass. J Chem Phys 2004 0.75
132 Theoretically informed coarse grain simulations of polymeric systems. J Chem Phys 2009 0.75
133 Role of local structure on motions on the potential energy landscape for a model supercooled polymer. J Chem Phys 2005 0.75
134 Surface activity of amphiphilic helical beta-peptides from molecular dynamics simulation. Langmuir 2009 0.75
135 Monte-Carlo simulation of ternary blends of block copolymers and homopolymers. J Chem Phys 2011 0.75
136 Isothermal stress and elasticity tensors for ions and point dipoles using Ewald summations. Phys Rev E Stat Nonlin Soft Matter Phys 2005 0.75
137 Stability of Na-, K-, and Ca-montmorillonite at high temperatures and pressures: a Monte Carlo simulation. Langmuir 2005 0.75
138 Homeotropic nano-particle assembly on degenerate planar nematic interfaces: films and droplets. Soft Matter 2015 0.75
139 Monte Carlo molecular simulation of the hydration of K-montmorillonite at 353 K and 625 bar. Langmuir 2004 0.75
140 Local elastic constants in thin films of an fcc crystal. Phys Rev E Stat Nonlin Soft Matter Phys 2003 0.75