Published in J Virol on February 01, 2005
A 5' RNA element promotes dengue virus RNA synthesis on a circular genome. Genes Dev (2006) 2.27
hnRNP A1 interacts with the 5' untranslated regions of enterovirus 71 and Sindbis virus RNA and is required for viral replication. J Virol (2009) 1.41
A balance between circular and linear forms of the dengue virus genome is crucial for viral replication. RNA (2010) 1.15
Brome mosaic virus capsid protein regulates accumulation of viral replication proteins by binding to the replicase assembly RNA element. RNA (2009) 1.05
Interaction between Brome mosaic virus proteins and RNAs: effects on RNA replication, protein expression, and RNA stability. J Virol (2005) 1.04
Distinct sites on the Sindbis virus RNA-dependent RNA polymerase for binding to the promoters for the synthesis of genomic and subgenomic RNA. J Virol (2007) 0.95
Systematic identification of novel, essential host genes affecting bromovirus RNA replication. PLoS One (2011) 0.90
Characterization of a novel 5' subgenomic RNA3a derived from RNA3 of Brome mosaic bromovirus. J Virol (2006) 0.81
hnRNP A1 interacts with the genomic and subgenomic RNA promoters of Sindbis virus and is required for the synthesis of G and SG RNA. J Biomed Sci (2010) 0.81
Nuclear Protein Sam68 Interacts with the Enterovirus 71 Internal Ribosome Entry Site and Positively Regulates Viral Protein Translation. J Virol (2015) 0.79
Inducible yeast system for Viral RNA recombination reveals requirement for an RNA replication signal on both parental RNAs. J Virol (2006) 0.78
In vitro synthesis of Sindbis virus genomic and subgenomic RNAs: influence of nsP4 mutations and nucleoside triphosphate concentrations. J Virol (2010) 0.77
A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics (1989) 105.30
Transformation of intact yeast cells treated with alkali cations. J Bacteriol (1983) 100.26
The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codon. Genes Dev (1991) 6.18
Multicomponent RNA plant virus infection derived from cloned viral cDNA. Proc Natl Acad Sci U S A (1984) 4.70
Comparison of the replication of positive-stranded RNA viruses of plants and animals. Adv Virus Res (1996) 4.02
Striking similarities in amino acid sequence among nonstructural proteins encoded by RNA viruses that have dissimilar genomic organization. Proc Natl Acad Sci U S A (1984) 3.95
Induced fit in RNA-protein recognition. Nat Struct Biol (2000) 3.65
A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids. Mol Cell (2002) 3.41
Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA. Nature (1985) 3.37
Brome mosaic virus helicase- and polymerase-like proteins colocalize on the endoplasmic reticulum at sites of viral RNA synthesis. J Virol (1996) 3.17
Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA3. J Virol (1987) 3.09
Minus-strand initiation by brome mosaic virus replicase within the 3' tRNA-like structure of native and modified RNA templates. J Mol Biol (1986) 2.99
RNA-dependent replication, transcription, and persistence of brome mosaic virus RNA replicons in S. cerevisiae. Cell (1993) 2.89
Replication of Sindbis virus. II. Multiple forms of double-stranded RNA isolated from infected cells. J Mol Biol (1972) 2.88
Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA. J Virol (1988) 2.66
A brome mosaic virus intergenic RNA3 replication signal functions with viral replication protein 1a to dramatically stabilize RNA in vivo. J Virol (1999) 2.31
Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter. Nucleic Acids Res (1988) 2.14
Brome mosaic virus polymerase-like protein 2a is directed to the endoplasmic reticulum by helicase-like viral protein 1a. J Virol (2000) 2.13
High efficiency T7 polymerase synthesis of infectious RNA from cloned brome mosaic virus cdna and effects of 5' extensions on transcript infectivity. Virology (1987) 1.97
Analysis of the role of brome mosaic virus 1a protein domains in RNA replication, using linker insertion mutagenesis. J Virol (1990) 1.97
Synthesis of subgenomic RNAs by positive-strand RNA viruses. Virology (2000) 1.93
Effects of deletions in the N-terminal basic arm of brome mosaic virus coat protein on RNA packaging and systemic infection. J Virol (1989) 1.92
Formation of brome mosaic virus RNA-dependent RNA polymerase in yeast requires coexpression of viral proteins and viral RNA. Proc Natl Acad Sci U S A (1995) 1.90
Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase. Proc Natl Acad Sci U S A (1997) 1.89
Brome mosaic virus RNA replication proteins 1a and 2a colocalize and 1a independently localizes on the yeast endoplasmic reticulum. J Virol (1999) 1.85
Brome mosaic virus RNA replication protein 1a dramatically increases in vivo stability but not translation of viral genomic RNA3. Proc Natl Acad Sci U S A (1998) 1.82
RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein. Proc Natl Acad Sci U S A (1999) 1.82
Putative RNA capping activities encoded by brome mosaic virus: methylation and covalent binding of guanylate by replicase protein 1a. J Virol (1999) 1.77
Brome mosaic virus Protein 1a recruits viral RNA2 to RNA replication through a 5' proximal RNA2 signal. J Virol (2001) 1.74
A replication silencer element in a plus-strand RNA virus. EMBO J (2003) 1.72
In vivo DNA expression of functional brome mosaic virus RNA replicons in Saccharomyces cerevisiae. J Virol (1997) 1.71
Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol (2000) 1.71
Defined mutations in a small region of the brome mosaic virus 2 gene cause diverse temperature-sensitive RNA replication phenotypes. J Virol (1989) 1.69
Mechanism of coronavirus transcription: duration of primary transcription initiation activity and effects of subgenomic RNA transcription on RNA replication. J Virol (1992) 1.61
A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex. J Mol Biol (1999) 1.59
Yeast mutations in multiple complementation groups inhibit brome mosaic virus RNA replication and transcription and perturb regulated expression of the viral polymerase-like gene. Proc Natl Acad Sci U S A (1997) 1.56
Yeast Lsm1p-7p/Pat1p deadenylation-dependent mRNA-decapping factors are required for brome mosaic virus genomic RNA translation. Mol Cell Biol (2003) 1.54
Bromovirus RNA replication and transcription require compatibility between the polymerase- and helicase-like viral RNA synthesis proteins. J Virol (1993) 1.49
The N-terminal half of the brome mosaic virus 1a protein has RNA capping-associated activities: specificity for GTP and S-adenosylmethionine. Virology (1999) 1.46
Mechanism for control of synthesis of Semliki Forest virus 26S and 42s RNA. J Virol (1978) 1.45
Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase. RNA (1997) 1.35
Use of bromovirus RNA3 hybrids to study template specificity in viral RNA amplification. J Virol (1991) 1.34
Moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase. Proc Natl Acad Sci U S A (1998) 1.26
A conserved hairpin structure in Alfamovirus and Bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro. RNA (2000) 1.21
RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesis. J Mol Biol (1999) 1.18
The brome mosaic virus RNA3 intergenic replication enhancer folds to mimic a tRNA TpsiC-stem loop and is modified in vivo. RNA (2001) 1.16
Regulation of (+):(-)-strand asymmetry in replication of brome mosaic virus RNA. Virology (1991) 1.15
Enhancer-like activity of a brome mosaic virus RNA promoter. J Virol (2003) 1.13
Second-site mutations in the brome mosaic virus RNA3 intercistronic region partially suppress a defect in coat protein mRNA transcription. Virology (1994) 1.11
Initiation of genomic plus-strand RNA synthesis from DNA and RNA templates by a viral RNA-dependent RNA polymerase. J Virol (1999) 1.05
An alternate pathway for recruiting template RNA to the brome mosaic virus RNA replication complex. J Virol (2003) 1.03
Spatial perturbations within an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase (RdRp) reveal that RdRp can adjust its promoter binding sites. J Virol (1999) 1.02
Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases. Virology (1998) 1.02
Template sequence near the initiation nucleotide can modulate brome mosaic virus RNA accumulation in plant protoplasts. J Virol (2004) 0.99
Requirements for brome mosaic virus subgenomic RNA synthesis in vivo and replicase-core promoter interactions in vitro. J Virol (2004) 0.95
A novel viral RNA species in Sindbis virus-infected cells. J Virol (1997) 0.93
Lessons learned from the core RNA promoters of Brome mosaic virus and Cucumber mosaic virus. Mol Plant Pathol (2002) 0.92
The 5' terminal sequence of alfalfa mosaic virus RNA 3 is dispensable for replication and contains a determinant for symptom formation. Virology (1996) 0.80
Brome mosaic virus coat protein inhibits viral RNA synthesis in vitro. Virology (1987) 0.79
Interference with brome mosaic virus replication by targeting the minus strand promoter. J Gen Virol (1993) 0.78
In vitro and in vivo characterization of new swine-origin H1N1 influenza viruses. Nature (2009) 14.59
Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Nature (2012) 14.17
Detecting differential gene expression with a semiparametric hierarchical mixture method. Biostatistics (2004) 6.51
Drosophila RNAi screen identifies host genes important for influenza virus replication. Nature (2008) 4.18
MicroRNA 29c is down-regulated in nasopharyngeal carcinomas, up-regulating mRNAs encoding extracellular matrix proteins. Proc Natl Acad Sci U S A (2008) 4.06
Biological and structural characterization of a host-adapting amino acid in influenza virus. PLoS Pathog (2010) 3.65
Selective incorporation of influenza virus RNA segments into virions. Proc Natl Acad Sci U S A (2003) 3.45
A positive-strand RNA virus replication complex parallels form and function of retrovirus capsids. Mol Cell (2002) 3.41
Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers. Cancer Res (2007) 2.93
Three-dimensional analysis of a viral RNA replication complex reveals a virus-induced mini-organelle. PLoS Biol (2007) 2.85
Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nat Struct Mol Biol (2010) 2.63
Importance of both the coding and the segment-specific noncoding regions of the influenza A virus NS segment for its efficient incorporation into virions. J Virol (2005) 2.45
Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus. Proc Natl Acad Sci U S A (2003) 2.43
Cytoplasmic viral replication complexes. Cell Host Microbe (2010) 2.09
Production of novel ebola virus-like particles from cDNAs: an alternative to ebola virus generation by reverse genetics. J Virol (2004) 2.09
Organelle-like membrane compartmentalization of positive-strand RNA virus replication factories. Annu Rev Microbiol (2010) 2.00
Top 10 plant viruses in molecular plant pathology. Mol Plant Pathol (2011) 1.96
Establishment of human papillomavirus infection requires cell cycle progression. PLoS Pathog (2009) 1.94
Alternate, virus-induced membrane rearrangements support positive-strand RNA virus genome replication. Proc Natl Acad Sci U S A (2004) 1.75
Suppression of cytokine storm with a sphingosine analog provides protection against pathogenic influenza virus. Proc Natl Acad Sci U S A (2011) 1.73
Production of infectious human papillomavirus independently of viral replication and epithelial cell differentiation. Proc Natl Acad Sci U S A (2005) 1.72
Brome mosaic virus RNA replication: revealing the role of the host in RNA virus replication. Annu Rev Phytopathol (2003) 1.69
Flock house virus RNA polymerase is a transmembrane protein with amino-terminal sequences sufficient for mitochondrial localization and membrane insertion. J Virol (2002) 1.62
Genome-wide expression profiling reveals EBV-associated inhibition of MHC class I expression in nasopharyngeal carcinoma. Cancer Res (2006) 1.62
Long-distance base pairing in flock house virus RNA1 regulates subgenomic RNA3 synthesis and RNA2 replication. J Virol (2002) 1.61
Yeast Lsm1p-7p/Pat1p deadenylation-dependent mRNA-decapping factors are required for brome mosaic virus genomic RNA translation. Mol Cell Biol (2003) 1.54
Strand-specific real-time RT-PCR for distinguishing influenza vRNA, cRNA, and mRNA. J Virol Methods (2010) 1.53
Functional analysis of three Arabidopsis ARGONAUTES using slicer-defective mutants. Plant Cell (2012) 1.49
Membrane synthesis, specific lipid requirements, and localized lipid composition changes associated with a positive-strand RNA virus RNA replication protein. J Virol (2003) 1.49
Involvement of host cellular multivesicular body functions in hepatitis B virus budding. Proc Natl Acad Sci U S A (2007) 1.49
Mutational analysis of conserved amino acids in the influenza A virus nucleoprotein. J Virol (2009) 1.40
Membrane-shaping host reticulon proteins play crucial roles in viral RNA replication compartment formation and function. Proc Natl Acad Sci U S A (2010) 1.37
Engineered retargeting of viral RNA replication complexes to an alternative intracellular membrane. J Virol (2003) 1.30
RAB11A is essential for transport of the influenza virus genome to the plasma membrane. J Virol (2011) 1.29
Mutation of host DnaJ homolog inhibits brome mosaic virus negative-strand RNA synthesis. J Virol (2003) 1.29
Host deadenylation-dependent mRNA decapping factors are required for a key step in brome mosaic virus RNA replication. J Virol (2006) 1.26
Brome mosaic virus 1a nucleoside triphosphatase/helicase domain plays crucial roles in recruiting RNA replication templates. J Virol (2005) 1.22
Isolation of cell lines that show novel, murine leukemia virus-specific blocks to early steps of retroviral replication. J Virol (2005) 1.16
Influenza A virus lacking M2 protein as a live attenuated vaccine. J Virol (2009) 1.16
Interactions between brome mosaic virus RNAs and cytoplasmic processing bodies. J Virol (2007) 1.14
An amphipathic alpha-helix controls multiple roles of brome mosaic virus protein 1a in RNA replication complex assembly and function. PLoS Pathog (2009) 1.13
Genes involved in DNA repair and nitrosamine metabolism and those located on chromosome 14q32 are dysregulated in nasopharyngeal carcinoma. Cancer Epidemiol Biomarkers Prev (2006) 1.11
A role for the C terminus of Mopeia virus nucleoprotein in its incorporation into Z protein-induced virus-like particles. J Virol (2010) 1.10
Virulence-affecting amino acid changes in the PA protein of H7N9 influenza A viruses. J Virol (2013) 1.06
In vivo self-interaction of nodavirus RNA replicase protein a revealed by fluorescence resonance energy transfer. J Virol (2005) 1.05
ALIX/AIP1 is required for NP incorporation into Mopeia virus Z-induced virus-like particles. J Virol (2011) 1.04
An alternate pathway for recruiting template RNA to the brome mosaic virus RNA replication complex. J Virol (2003) 1.03
Nodavirus-induced membrane rearrangement in replication complex assembly requires replicase protein a, RNA templates, and polymerase activity. J Virol (2010) 1.02
Role of host-specific amino acids in the pathogenicity of avian H5N1 influenza viruses in mice. J Gen Virol (2009) 1.02
Lack of association between EBV and breast carcinoma. Cancer Epidemiol Biomarkers Prev (2005) 1.02
Limited agreement of independent RNAi screens for virus-required host genes owes more to false-negative than false-positive factors. PLoS Comput Biol (2013) 1.01
The host cell sulfonation pathway contributes to retroviral infection at a step coincident with provirus establishment. PLoS Pathog (2008) 0.99
Nodavirus RNA replication protein a induces membrane association of genomic RNA. J Virol (2007) 0.99
Systemic dissemination of H5N1 influenza A viruses in ferrets and hamsters after direct intragastric inoculation. J Virol (2011) 0.98
Virulence determinants of pandemic A(H1N1)2009 influenza virus in a mouse model. J Virol (2012) 0.97
F1Fo-ATPase, F-type proton-translocating ATPase, at the plasma membrane is critical for efficient influenza virus budding. Proc Natl Acad Sci U S A (2012) 0.96
5' cis elements direct nodavirus RNA1 recruitment to mitochondrial sites of replication complex formation. J Virol (2009) 0.94
A comprehensive map of the influenza A virus replication cycle. BMC Syst Biol (2013) 0.93
Live bivalent vaccine for parainfluenza and influenza virus infections. J Virol (2005) 0.91
Intersection of the multivesicular body pathway and lipid homeostasis in RNA replication by a positive-strand RNA virus. J Virol (2011) 0.91
Host acyl coenzyme A binding protein regulates replication complex assembly and activity of a positive-strand RNA virus. J Virol (2012) 0.91
Systematic identification of novel, essential host genes affecting bromovirus RNA replication. PLoS One (2011) 0.90
Role of host reticulon proteins in rearranging membranes for positive-strand RNA virus replication. Curr Opin Microbiol (2012) 0.87
Bromovirus RNA replication compartment formation requires concerted action of 1a's self-interacting RNA capping and helicase domains. J Virol (2011) 0.84
The cellular decapping activators LSm1, Pat1, and Dhh1 control the ratio of subgenomic to genomic Flock House virus RNAs. J Virol (2013) 0.83
Orphan nuclear receptor PNR/NR2E3 stimulates p53 functions by enhancing p53 acetylation. Mol Cell Biol (2011) 0.82
Cellular transcription factor ZASC1 regulates murine leukemia virus transcription. J Virol (2010) 0.81
Contribution of Sec61α to the life cycle of Ebola virus. J Infect Dis (2011) 0.81
Statistical use of argonaute expression and RISC assembly in microRNA target identification. PLoS Comput Biol (2009) 0.81
Systematic analyses of the cytotoxic effects of compound 11a, a putative synthetic agonist of photoreceptor-specific nuclear receptor (PNR), in cancer cell lines. PLoS One (2013) 0.81
Filling a GAP(DH) in asymmetric viral RNA synthesis. Cell Host Microbe (2008) 0.80
Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs. BMC Syst Biol (2012) 0.80
High-throughput isolation of Saccharomyces cerevisiae RNA. Biotechniques (2005) 0.78
Detecting protein-protein interaction in live yeast by flow cytometry. Cytometry A (2005) 0.78
Inducible yeast system for Viral RNA recombination reveals requirement for an RNA replication signal on both parental RNAs. J Virol (2006) 0.78
The cellular factors Vps18 and Mon2 are required for efficient production of infectious HIV-1 particles. J Virol (2011) 0.77
Novel antivirals inhibit early steps in HPV infection. Antiviral Res (2011) 0.77
ZASC1 stimulates HIV-1 transcription elongation by recruiting P-TEFb and TAT to the LTR promoter. PLoS Pathog (2013) 0.76
A stearoyl-acyl carrier protein desaturase, NbSACPD-C, is critical for ovule development in Nicotiana benthamiana. Plant J (2014) 0.76
Correction: Host ESCRT Proteins Are Required for Bromovirus RNA Replication Compartment Assembly and Function. PLoS Pathog (2015) 0.75
ZASC1 knockout mice exhibit an early bone marrow-specific defect in murine leukemia virus replication. Virol J (2013) 0.75
[The enigma of influenza virus genome packaging revealed]. Tanpakushitsu Kakusan Koso (2003) 0.75
CARM1 Methylates Chromatin Remodeling Factor BAF155 to Enhance Tumor Progression and Metastasis. Cancer Cell (2016) 0.75