PubRank

Wing Hung Wong

Author PubWeight™ 131.74‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics 2008 24.32
2 Statistical inferences for isoform expression in RNA-Seq. Bioinformatics 2009 12.50
3 Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Res 2010 6.95
4 dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data. Bioinformatics 2004 6.78
5 Modeling non-uniformity in short-read rates in RNA-Seq data. Genome Biol 2010 6.10
6 MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. RNA 2008 5.78
7 TileMap: create chromosomal map of tiling array hybridizations. Bioinformatics 2005 5.68
8 Identifiability of isoform deconvolution from junction arrays and RNA-Seq. Bioinformatics 2009 4.32
9 Transitive functional annotation by shortest-path analysis of gene expression data. Proc Natl Acad Sci U S A 2002 3.93
10 Novel mechanisms of T-cell and dendritic cell activation revealed by profiling of psoriasis on the 63,100-element oligonucleotide array. Physiol Genomics 2003 3.39
11 Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays. PLoS Comput Biol 2006 3.39
12 ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis. Nucleic Acids Res 2003 3.31
13 Functional annotation and network reconstruction through cross-platform integration of microarray data. Nat Biotechnol 2005 3.30
14 Probe selection and expression index computation of Affymetrix Exon Arrays. PLoS One 2006 3.03
15 ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells. Proc Natl Acad Sci U S A 2009 2.96
16 A gene regulatory network in mouse embryonic stem cells. Proc Natl Acad Sci U S A 2007 2.94
17 Exon arrays provide accurate assessments of gene expression. Genome Biol 2007 2.86
18 Cross-hybridization modeling on Affymetrix exon arrays. Bioinformatics 2008 2.54
19 Improving PacBio long read accuracy by short read alignment. PLoS One 2012 2.06
20 Completely phased genome sequencing through chromosome sorting. Proc Natl Acad Sci U S A 2010 1.96
21 Assessing the conservation of mammalian gene expression using high-density exon arrays. Mol Biol Evol 2007 1.81
22 Six2 and Wnt regulate self-renewal and commitment of nephron progenitors through shared gene regulatory networks. Dev Cell 2012 1.75
23 Human transcriptome array for high-throughput clinical studies. Proc Natl Acad Sci U S A 2011 1.62
24 Statistical Modeling of RNA-Seq Data. Stat Sci 2011 1.49
25 Characterization of the human ESC transcriptome by hybrid sequencing. Proc Natl Acad Sci U S A 2013 1.48
26 Expression of heat shock proteins and heat shock protein messenger ribonucleic acid in human prostate carcinoma in vitro and in tumors in vivo. Cell Stress Chaperones 2005 1.41
27 RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. Genome Res 2012 1.36
28 Analysis of factorial time-course microarrays with application to a clinical study of burn injury. Proc Natl Acad Sci U S A 2010 1.33
29 Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes. Proc Natl Acad Sci U S A 2002 1.28
30 A small-molecule inhibitor of Mps1 blocks the spindle-checkpoint response to a lack of tension on mitotic chromosomes. Curr Biol 2005 1.26
31 Computational biology: toward deciphering gene regulatory information in mammalian genomes. Biometrics 2006 1.16
32 Comparative linkage analysis and visualization of high-density oligonucleotide SNP array data. BMC Genet 2005 1.14
33 Array comparative genome hybridization for tumor classification and gene discovery in mouse models of malignant melanoma. Cancer Res 2003 1.12
34 Using CisGenome to analyze ChIP-chip and ChIP-seq data. Curr Protoc Bioinformatics 2011 1.11
35 CisGenome Browser: a flexible tool for genomic data visualization. Bioinformatics 2010 1.10
36 The analysis of ChIP-Seq data. Methods Enzymol 2011 1.00
37 Using high-density exon arrays to profile gene expression in closely related species. Nucleic Acids Res 2009 0.98
38 IN02, a positive regulator of lipid biosynthesis, is essential for the formation of inducible membranes in yeast. Mol Biol Cell 2002 0.96
39 A study of density of states and ground states in hydrophobic-hydrophilic protein folding models by equi-energy sampling. J Chem Phys 2006 0.95
40 A new FACS approach isolates hESC derived endoderm using transcription factors. PLoS One 2011 0.94
41 Energy landscape of a spin-glass model: exploration and characterization. Phys Rev E Stat Nonlin Soft Matter Phys 2009 0.89
42 Simultaneous isoform discovery and quantification from RNA-seq. Stat Biosci 2013 0.86
43 Integrated analysis of microarray data and gene function information. OMICS 2004 0.81
44 A sparse transmission disequilibrium test for haplotypes based on Bradley-Terry graphs. Hum Hered 2012 0.77
45 HumanUpstream and MouseUpstream: databases of promoter sequences in the human and mouse genomes. OMICS 2005 0.75