PubRank

Yuji Nagata

Author PubWeight™ 63.36‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader. J Bacteriol 2012 5.26
2 GenomeMatcher: a graphical user interface for DNA sequence comparison. BMC Bioinformatics 2008 4.52
3 Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel. J Biol Chem 2003 1.48
4 Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate. Nat Chem Biol 2009 1.39
5 Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element. J Bacteriol 2012 1.23
6 Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205. Arch Microbiol 2007 1.21
7 Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102. Mol Microbiol 2006 1.20
8 Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates. Biochemistry 2003 1.19
9 Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues. Biochemistry 2004 1.19
10 Strategies for bioremediation of polychlorinated biphenyls. Appl Microbiol Biotechnol 2004 1.15
11 Cloning and characterization of linR, involved in regulation of the downstream pathway for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26. Appl Environ Microbiol 2002 1.14
12 The lin genes for γ-hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids. Biosci Biotechnol Biochem 2011 1.13
13 Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26. J Bacteriol 2005 1.13
14 Crystal structure of γ-hexachlorocyclohexane Dehydrochlorinase LinA from Sphingobium japonicum UT26. J Mol Biol 2010 1.12
15 Novel approach to the improvement of biphenyl and polychlorinated biphenyl degradation activity: promoter implantation by homologous recombination. Appl Environ Microbiol 2003 1.11
16 High-temperature-induced transposition of insertion elements in burkholderia multivorans ATCC 17616. Appl Environ Microbiol 2005 1.10
17 Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities. Appl Environ Microbiol 2005 1.10
18 Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes. DNA Res 2013 1.01
19 Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition. Biochemistry 2002 1.01
20 Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases. Appl Environ Microbiol 2005 1.00
21 Identification and characterization of genes encoding a putative ABC-type transporter essential for utilization of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26. J Bacteriol 2007 1.00
22 Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering. Angew Chem Int Ed Engl 2010 0.98
23 Catalytic mechanism of the maloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. J Biol Chem 2003 0.98
24 Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology. Environ Microbiol 2010 0.97
25 Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts. Appl Microbiol Biotechnol 2015 0.96
26 Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation. Appl Environ Microbiol 2006 0.91
27 Analysis of extracellular alginate lyase and its gene from a marine bacterial strain, Pseudoalteromonas atlantica AR06. Appl Microbiol Biotechnol 2009 0.91
28 Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches. Appl Microbiol Biotechnol 2006 0.90
29 Distribution and organization of auxotrophic genes on the multichromosomal genome of Burkholderia multivorans ATCC 17616. J Bacteriol 2003 0.90
30 Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a γ-Hexachlorocyclohexane-Degrading Mixed Culture. Genome Announc 2014 0.89
31 Construction of signature-tagged mutant library in Mesorhizobium loti as a powerful tool for functional genomics. DNA Res 2008 0.88
32 Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis. Biochemistry 2002 0.88
33 Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids. J Bacteriol 2010 0.86
34 Crystallization and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.85
35 Biochemical characteristics of the novel haloalkane dehalogenase DatA, isolated from the plant pathogen Agrobacterium tumefaciens C58. Appl Environ Microbiol 2010 0.85
36 Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26. Biochemistry 2005 0.85
37 Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements. J Mol Biol 2007 0.84
38 Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans. Microbiology 2008 0.83
39 Functional analysis of unique class II insertion sequence IS1071. Appl Environ Microbiol 2006 0.83
40 Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil. FEMS Microbiol Lett 2012 0.83
41 Site-specific recombination system encoded by toluene catabolic transposon Tn4651. J Bacteriol 2002 0.82
42 Complete Genome Sequence of Pseudomonas aeruginosa MTB-1, Isolated from a Microbial Community Enriched by the Technical Formulation of Hexachlorocyclohexane. Genome Announc 2014 0.82
43 Stereoselectivity and conformational stability of haloalkane dehalogenase DbjA from Bradyrhizobium japonicum USDA110: the effect of pH and temperature. FEBS J 2011 0.81
44 Expression of glycosylated haloalkane dehalogenase LinB in Pichia pastoris. Protein Expr Purif 2005 0.81
45 Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110. Acta Crystallogr Sect F Struct Biol Cryst Commun 2007 0.81
46 Crystal structure and site-directed mutagenesis analyses of haloalkane dehalogenase LinB from Sphingobium sp. strain MI1205. J Bacteriol 2013 0.81
47 Insertion sequence-based cassette PCR: cultivation-independent isolation of gamma-hexachlorocyclohexane-degrading genes from soil DNA. Appl Microbiol Biotechnol 2008 0.81
48 Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-Ray crystallography and microcalorimetry. Appl Environ Microbiol 2007 0.80
49 Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937). Genome Announc 2014 0.80
50 ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids. Environ Microbiol 2012 0.79
51 Characterization of the traD operon of naphthalene-catabolic plasmid NAH7: a host-range modifier in conjugative transfer. J Bacteriol 2008 0.79
52 Employment of the human estrogen receptor beta ligand-binding domain and co-activator SRC1 nuclear receptor-binding domain for the construction of a yeast two-hybrid detection system for endocrine disrupters. J Biochem 2002 0.79
53 The identification of catalytic pentad in the haloalkane dehalogenase DhmA from Mycobacterium avium N85: reaction mechanism and molecular evolution. J Struct Biol 2006 0.78
54 Crystallization and preliminary X-ray analysis of gamma-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26. Acta Crystallogr Sect F Struct Biol Cryst Commun 2009 0.78
55 The effect of a unique halide-stabilizing residue on the catalytic properties of haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58. FEBS J 2013 0.77
56 Cointegrate-resolution of toluene-catabolic transposon Tn4651: determination of crossover site and the segment required for full resolution activity. Plasmid 2012 0.77
57 Suppression of pleiotropic phenotypes of a Burkholderia multivorans fur mutant by oxyR mutation. Microbiology 2012 0.77
58 Inhibitory effect of Pseudomonas putida nitrogen-related phosphotransferase system on conjugative transfer of IncP-9 plasmid from Escherichia coli. FEMS Microbiol Lett 2013 0.76
59 Growth inhibition by metabolites of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26. Biosci Biotechnol Biochem 2006 0.76
60 Crystallization and preliminary X-ray analysis of the haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58. Acta Crystallogr Sect F Struct Biol Cryst Commun 2012 0.75
61 Complete Genome Sequence of Ralstonia pickettii DTP0602, a 2,4,6-Trichlorophenol Degrader. Genome Announc 2013 0.75
62 Identification of insertion sequence from a gamma-hexachlorocyclohexane degrading bacterium, Sphingomonas paucimobilis UT26. Biosci Biotechnol Biochem 2005 0.75