Published in Bioinformatics on February 02, 2005
Genome-wide hepatitis C virus amino acid covariance networks can predict response to antiviral therapy in humans. J Clin Invest (2008) 2.08
PEDANT covers all complete RefSeq genomes. Nucleic Acids Res (2008) 1.78
Structural variants in the soybean genome localize to clusters of biotic stress-response genes. Plant Physiol (2012) 1.48
Structural models for the KCNQ1 voltage-gated potassium channel. Biochemistry (2007) 1.38
Characterization of the Uukuniemi virus group (Phlebovirus: Bunyaviridae): evidence for seven distinct species. J Virol (2013) 1.33
Mapping of the minimal inorganic phosphate transporting unit of human PiT2 suggests a structure universal to PiT-related proteins from all kingdoms of life. BMC Biochem (2011) 1.18
Membrane protein prediction methods. Methods (2007) 1.17
Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity. PLoS One (2013) 1.07
The genome of epsilon15, a serotype-converting, Group E1 Salmonella enterica-specific bacteriophage. Virology (2007) 1.06
Characterization of the Candiru antigenic complex (Bunyaviridae: Phlebovirus), a highly diverse and reassorting group of viruses affecting humans in tropical America. J Virol (2011) 1.03
Identification of the asparagine synthase responsible for D-Asp amidation in the Lactococcus lactis peptidoglycan interpeptide crossbridge. J Bacteriol (2009) 1.02
Mutations in TMEM76* cause mucopolysaccharidosis IIIC (Sanfilippo C syndrome). Am J Hum Genet (2006) 1.01
Simultaneous prediction of protein secondary structure and transmembrane spans. Proteins (2013) 1.00
Genomic and phylogenetic characterization of Leanyer virus, a novel orthobunyavirus isolated in northern Australia. J Gen Virol (2011) 0.98
Bladder cancer-associated protein, a potential prognostic biomarker in human bladder cancer. Mol Cell Proteomics (2009) 0.98
Properties of the phage-shock-protein (Psp) regulatory complex that govern signal transduction and induction of the Psp response in Escherichia coli. Microbiology (2010) 0.97
Highly divergent mitochondrial ATP synthase complexes in Tetrahymena thermophila. PLoS Biol (2010) 0.96
Aguacate virus, a new antigenic complex of the genus Phlebovirus (family Bunyaviridae). J Gen Virol (2011) 0.96
Diversity and evolution of the small multidrug resistance protein family. BMC Evol Biol (2009) 0.95
Characterization of the Salehabad virus species complex of the genus Phlebovirus (Bunyaviridae). J Gen Virol (2012) 0.95
A combination of compositional index and genetic algorithm for predicting transmembrane helical segments. PLoS One (2011) 0.90
CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources. BMC Microbiol (2010) 0.90
Characterization of the Sandfly fever Naples species complex and description of a new Karimabad species complex (genus Phlebovirus, family Bunyaviridae). J Gen Virol (2013) 0.88
Evolution of vacuolar proton pyrophosphatase domains and volutin granules: clues into the early evolutionary origin of the acidocalcisome. Biol Direct (2011) 0.88
Membrane topology of the Bacillus anthracis GerH germinant receptor proteins. J Bacteriol (2011) 0.88
Do plants contain g protein-coupled receptors? Plant Physiol (2013) 0.86
Evidence for involvement of TRPA1 in the detection of vibrations by hair bundle mechanoreceptors in sea anemones. J Comp Physiol A Neuroethol Sens Neural Behav Physiol (2011) 0.86
Characterization of the structure of RAMP1 by mutagenesis and molecular modeling. Biophys J (2006) 0.86
Induction of KIAA1199/CEMIP is associated with colon cancer phenotype and poor patient survival. Oncotarget (2015) 0.85
Genomic and antigenic characterization of Jos virus. J Gen Virol (2011) 0.85
Mapping of protein- and chromatin-interactions at the nuclear lamina. Nucleus (2010) 0.84
Computational modeling of membrane proteins. Proteins (2014) 0.83
Transmembrane protein alignment and fold recognition based on predicted topology. PLoS One (2013) 0.83
Signatures of cytoplasmic proteins in the exoproteome distinguish community- and hospital-associated methicillin-resistant Staphylococcus aureus USA300 lineages. Virulence (2017) 0.83
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae). Viruses (2016) 0.82
Membrane catalysis of peptide-receptor binding. Biochem Cell Biol (2010) 0.81
Membrane topology and predicted RNA-binding function of the 'early responsive to dehydration (ERD4)' plant protein. PLoS One (2012) 0.79
Identification of a functionally important loop in Salmonella typhimurium ArnT. Biochemistry (2010) 0.79
UBQLN4 recognizes mislocalized transmembrane domain proteins and targets these to proteasomal degradation. EMBO Rep (2016) 0.79
B cell receptor accessory molecule CD79α: characterisation and expression analysis in a cartilaginous fish, the spiny dogfish (Squalus acanthias). Fish Shellfish Immunol (2013) 0.78
Contribution of charged and polar residues for the formation of the E1-E2 heterodimer from Hepatitis C Virus. J Mol Model (2010) 0.78
Rampant exchange of the structure and function of extramembrane domains between membrane and water soluble proteins. PLoS Comput Biol (2013) 0.78
Implications of Human Transient Receptor Potential Melastatin 8 (TRPM8) Channel Gating from Menthol Binding Studies of the Sensing Domain. Biochemistry (2015) 0.77
Improved prediction of trans-membrane spans in proteins using an Artificial Neural Network. IEEE Symp Comput Intell Bioinforma Comput Biol Proc (2009) 0.77
Hidden markov model for the prediction of transmembrane proteins using MATLAB. Bioinformation (2011) 0.77
Solution NMR studies reveal the location of the second transmembrane domain of the human sigma-1 receptor. FEBS Lett (2015) 0.76
Ca(2+)/Cation Antiporters (CaCA): Identification, Characterization and Expression Profiling in Bread Wheat (Triticum aestivum L.). Front Plant Sci (2016) 0.76
HMM_RA: an improved method for alpha-helical transmembrane protein topology prediction. Bioinform Biol Insights (2008) 0.76
Genome-wide analysis of regulatory proteases sequences identified through bioinformatics data mining in Taenia solium. BMC Genomics (2014) 0.75
Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes. Source Code Biol Med (2013) 0.75
Identification and application of keto acids transporters in Yarrowia lipolytica. Sci Rep (2015) 0.75
Development of a prediction system for tail-anchored proteins. BMC Bioinformatics (2016) 0.75
Molecular characterization of the CD79a and CD79b and its role against Aeromonas hydrophila infection in Chinese sucker (Myxocyprinus asiaticus). Fish Physiol Biochem (2017) 0.75
A drinking water crisis in Lake Taihu, China: linkage to climatic variability and lake management. Environ Manage (2010) 2.45
Autophagosome supports coxsackievirus B3 replication in host cells. J Virol (2008) 2.24
Structural determinants of RhoA binding and nucleotide exchange in leukemia-associated Rho guanine-nucleotide exchange factor. J Biol Chem (2004) 1.65
Differential impacts of solar UV radiation on photosynthetic carbon fixation from the coastal to offshore surface waters in the South China Sea. Photochem Photobiol (2010) 1.43
Intracellular ATP levels are a pivotal determinant of chemoresistance in colon cancer cells. Cancer Res (2011) 1.31
DNA damage induces downregulation of histone gene expression through the G1 checkpoint pathway. EMBO J (2004) 1.27
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant J (2014) 1.22
Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator. Cell Res (2013) 1.18
Tumor necrosis factor α suppresses the mesenchymal stem cell osteogenesis promoter miR-21 in estrogen deficiency-induced osteoporosis. J Bone Miner Res (2013) 1.13
REGgamma modulates p53 activity by regulating its cellular localization. J Cell Sci (2010) 1.11
Stress-activated protein kinases are involved in coxsackievirus B3 viral progeny release. J Virol (2005) 1.10
Ubiquitination is required for effective replication of coxsackievirus B3. PLoS One (2008) 1.09
Preparation, characterization and in vitro cytotoxicity of indomethacin-loaded PLLA/PLGA microparticles using supercritical CO2 technique. Eur J Pharm Biopharm (2008) 1.09
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices. BMC Bioinformatics (2007) 1.08
Influence of algal bloom degradation on nutrient release at the sediment-water interface in Lake Taihu, China. Environ Sci Pollut Res Int (2012) 1.04
Resolving the variability of CDOM fluorescence to differentiate the sources and fate of DOM in Lake Taihu and its tributaries. Chemosphere (2010) 1.03
Quasi-consensus-based comparison of profile hidden Markov models for protein sequences. Bioinformatics (2005) 1.02
Characterization of bacterial communities associated with organic aggregates in a large, shallow, eutrophic freshwater lake (Lake Taihu, China). Microb Ecol (2009) 0.96
A conserved hydrophobic surface of the LARG pleckstrin homology domain is critical for RhoA activation in cells. Cell Signal (2009) 0.95
CCR7 guides migration of mesenchymal stem cell to secondary lymphoid organs: a novel approach to separate GvHD from GvL effect. Stem Cells (2014) 0.92
Clinical research of genetically modified dendritic cells in combination with cytokine-induced killer cell treatment in advanced renal cancer. BMC Cancer (2014) 0.91
Lipopolysaccharide differentially affects the osteogenic differentiation of periodontal ligament stem cells and bone marrow mesenchymal stem cells through Toll-like receptor 4 mediated nuclear factor κB pathway. Stem Cell Res Ther (2014) 0.91
Seasonal variations in microcystin concentrations in Lake Taihu, China. Environ Monit Assess (2008) 0.91
Study of poly(L-lactide) microparticles based on supercritical CO2. J Mater Sci Mater Med (2007) 0.88
Comprehensive characterization of human genome variation by high coverage whole-genome sequencing of forty four Caucasians. PLoS One (2013) 0.87
Self-care practices of Chinese individuals with diabetes. Exp Ther Med (2013) 0.87
Growth and phosphate uptake kinetics of Microcystis aeruginosa under various environmental conditions. J Environ Sci (China) (2004) 0.86
Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines. BMC Bioinformatics (2010) 0.86
Targeted disruption of Mib2 causes exencephaly with a variable penetrance. Genesis (2007) 0.86
A universal reference sample derived from clone vector for improved detection of differential gene expression. BMC Genomics (2006) 0.86
Inhibition of the extracellular signal-regulated kinase signaling pathway is correlated with proteasome inhibitor suppression of coxsackievirus replication. Biochem Biophys Res Commun (2007) 0.83
EGFR-SGLT1 interaction does not respond to EGFR modulators, but inhibition of SGLT1 sensitizes prostate cancer cells to EGFR tyrosine kinase inhibitors. Prostate (2013) 0.83
Truncated hepatitis C virus core protein encoded in hepatocellular carcinomas. Int J Mol Med (2004) 0.83
Variability of phosphorus concentration in large, shallow and eutrophic Lake Taihu, China. Water Environ Res (2008) 0.82
Intracellular phosphorus metabolism of Microcystis aeruginosa under various redox potential in darkness. Microbiol Res (2003) 0.82
The response of epiphytic microbes to habitat and growth status of Potamogeton malaianus Miq. in Lake Taihu. J Basic Microbiol (2013) 0.82
Annexin A1: a new biomarker for predicting nasopharyngeal carcinoma response to radiotherapy. Med Hypotheses (2013) 0.81
Phytoplankton community from Lake Taihu, China, has dissimilar responses to inorganic and organic nutrients. J Environ Sci (China) (2010) 0.81
Evolutionary Model Selection and Parameter Estimation for Protein-Protein Interaction Network Based on Differential Evolution Algorithm. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.81
Influence of salinity on the bacterial community composition in Lake Bosten, a large oligosaline lake in arid northwestern China. Appl Environ Microbiol (2012) 0.80
Comparing sediment bacterial communities in the macrophyte-dominated and algae-dominated areas of eutrophic Lake Taihu, China. Can J Microbiol (2011) 0.80
Prediction of contact matrix for protein-protein interaction. Bioinformatics (2013) 0.80
Predicting ligand binding residues and functional sites using multipositional correlations with graph theoretic clustering and kernel CCA. IEEE/ACM Trans Comput Biol Bioinform (2012) 0.80
The role of periphytes in the shift between macrophyte and phytoplankton dominated systems in a shallow, eutrophic lake (Lake Taihu, China). Sci China C Life Sci (2006) 0.80
Identification and characterization of microRNAs by high through-put sequencing in mesenchymal stem cells and bone tissue from mice of age-related osteoporosis. PLoS One (2013) 0.80
CASA: a server for the critical assessment of protein sequence alignment accuracy. Bioinformatics (2002) 0.80
[Effects of epiphyte on submerged macrophyte in Taihu Lake]. Ying Yong Sheng Tai Xue Bao (2007) 0.80
DNA extraction procedure affects organic-aggregate-attached bacterial community profiles from a shallow eutrophic lake. Can J Microbiol (2009) 0.80
Involvement of de novo synthesized palmitate and mitochondrial EGFR in EGF induced mitochondrial fusion of cancer cells. Cell Cycle (2014) 0.80
[Spatial distribution of COD and the correlations with other parameters in the northern region of Lake Taihu]. Huan Jing Ke Xue (2008) 0.79
Liposome-mediated transient transfection reduces cholesterol-dependent coxsackievirus infectivity. J Virol Methods (2005) 0.79
Proton energy optimization and reduction for intensity-modulated proton therapy. Phys Med Biol (2014) 0.78
Transductive learning with EM algorithm to classify proteins based on phylogenetic profiles. Int J Data Min Bioinform (2007) 0.78
Evaluating genotoxicity associated with microcystin-LR and its risk to source water safety in Meiliang Bay, Taihu Lake. Environ Toxicol (2006) 0.78
The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis. BMC Genomics (2014) 0.78
A season-dependent variation of genotoxicity of surface water samples from Taihu Lake, Yangzte delta. Environ Monit Assess (2004) 0.78
Pyrosequencing analysis of free-living and attached bacterial communities in Meiliang Bay, Lake Taihu, a large eutrophic shallow lake in China. Can J Microbiol (2015) 0.78
Decomposition of Microcystis blooms: implications for the structure of the sediment bacterial community, as assessed by a mesocosm experiment in Lake Taihu, China. J Basic Microbiol (2012) 0.78
Comparison of enhancement of pentachlorophenol sonolysis at 20 kHz by dual-frequency sonication. Ultrason Sonochem (2005) 0.77
Aldehyde dehydrogenase of the haloalkaliphilic archaeon Natronomonas pharaonis and its function in ethanol metabolism. Extremophiles (2008) 0.77
Transplanted mesenchymal stem cells can inhibit the three developmental stages of murine acute graft-versus-host disease. In Vivo (2010) 0.77
Optimizing nucleotide sequence ensembles for combinatorial protein libraries using a genetic algorithm. Nucleic Acids Res (2009) 0.77
[Cloning and analysis of a halogenase gene of Streptomyces sp. 604F from the Arctic Ocean]. Wei Sheng Wu Xue Bao (2014) 0.77
[Role of bone marrow-derived mesenchymal stem cells in treating estrogen deficiency induced osteoporosis]. Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi (2013) 0.77
Tripeptidyl peptidase II serves as an alternative to impaired proteasome to maintain viral growth in the host cells. FEBS Lett (2010) 0.77
Characterization of alcohol dehydrogenase from the haloalkaliphilic archaeon Natronomonas pharaonis. Extremophiles (2008) 0.77
Comparison of microbial community between two shallow freshwater lakes in middle Yangtze basin, East China. Chemosphere (2005) 0.77
Identification of the bacteriocin subtilosin A and loss of purL results in its high-level production in Bacillus amyloliquefaciens. Res Microbiol (2012) 0.76
ATP citrate lyase mediates resistance of colorectal cancer cells to SN38. Mol Cancer Ther (2013) 0.76
Bacterial diversity in the sediment from polymetallic nodule fields of the Clarion-Clipperton Fracture Zone. J Microbiol (2010) 0.76
Vertical diversity of sediment bacterial communities in two different trophic states of the eutrophic Lake Taihu, China. J Environ Sci (China) (2013) 0.76
Can the freshwater bacterial communities shift to the "marine-like" taxa? J Basic Microbiol (2014) 0.76
Clustering exact matches of pairwise sequence alignments by weighted linear regression. BMC Bioinformatics (2008) 0.75
Bacterial Community Composition in Oligosaline Lake Bosten: Low Overlap of Betaproteobacteria and Bacteroidetes with Freshwater Ecosystems. Microbes Environ (2015) 0.75
Comparative proteomic analysis of plasma from bipolar depression and depressive disorder: identification of proteins associated with immune regulatory. Protein Cell (2015) 0.75
Cloning and overexpression of a new chitosanase gene from Penicillium sp. D-1. AMB Express (2012) 0.75
Low resilience of the particle-attached bacterial community in response to frequent wind-wave disturbance in freshwater mesocosms. Microbes Environ (2013) 0.75
[Induction of protective immunity against Schistosoma japonicum by pcDNA3.1/Sj20.8 nucleic acid vaccine in BALB/c mice]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi (2006) 0.75
[Amplification and sequencing of the gene coding for mucin-like protein from Schistosoma japonicum]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi (2004) 0.75
[Predation of micro-protozoa on bacteria in Taihu Lake]. Ying Yong Sheng Tai Xue Bao (2007) 0.75
[Pharmacokinetics and relative bioavailability of THC and THC-solid dispersion orally to mice at single dose]. Zhongguo Zhong Yao Za Zhi (2014) 0.75
An ultrasonic method for separation of epiphytic microbes from freshwater submerged macrophytes. J Basic Microbiol (2013) 0.75
[Effects of ecosystem structure on the organic aggregates physical and chemical parameters of Lake Taihu]. Huan Jing Ke Xue (2009) 0.75
[Parameter determination of algae growth based on ecological tank experiment]. Huan Jing Ke Xue (2005) 0.75
Low-cost adsorbent prepared from sewage sludge and corn stalk for the removal of COD in leachate. Environ Sci Pollut Res Int (2014) 0.75
[Role of bone marrow-derived mesenchymal stem cells in treating colitis through Fas/FasL-mediated immune regulation]. Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi (2013) 0.75
[Characteristic analysis of acute leukemia immunophenotyping in 180 cases by flow cytometry]. Zhongguo Shi Yan Xue Ye Xue Za Zhi (2004) 0.75
[Identification of the differentially expressed genes between primary breast cancer and paired lymph node metastasis through combining mRNA differential display and gene microarray]. Zhonghua Yi Xue Za Zhi (2006) 0.75
Comparative analysis of alkaline phosphatase-encoding genes (phoX) in two contrasting zones of Lake Taihu. Can J Microbiol (2014) 0.75
Recovery of novel alkaline phosphatase-encoding genes (phoX) from eutrophic Lake Taihu. Can J Microbiol (2014) 0.75
A novel way to purify recombinant baculoviruses by using bacmid. Biosci Rep (2009) 0.75
[Attenuation of photosynthetically available radiation (PAR) in Meiliang Bay under different winds and waves]. Ying Yong Sheng Tai Xue Bao (2005) 0.75
Impacts of different salinities on bacterial biofilm communities in fresh water. Can J Microbiol (2014) 0.75
[Effects of wind-induced wave on organic aggregates physical and chemical characteristics in a shallow eutrophic lake (Lake Taihu) in China]. Huan Jing Ke Xue (2011) 0.75
Predicting interacting residues using long-distance information and novel decoding in hidden Markov models. IEEE Trans Nanobioscience (2013) 0.75
[Comparison of immunologic regulatory characteristics of mesenchymal stem cells derived from human umbilical cord amnion and adult bone marrow]. Zhongguo Shi Yan Xue Ye Xue Za Zhi (2011) 0.75
MRAD: Metabolic reaction analysis database--an entity-relationship approach. J Mol Microbiol Biotechnol (2003) 0.75
[Comparative study on seasonal variations of community structure of rotifer in different lake areas in Lake Taihu]. Huan Jing Ke Xue (2008) 0.75
Structural changes of the sediment bacterial community in Meiliang Bay of Lake Taihu, China, during typhoon Morakot, 2009. J Basic Microbiol (2011) 0.75