1
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Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.
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Genome Biol
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2005
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8.32
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2
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ORegAnno: an open-access community-driven resource for regulatory annotation.
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Nucleic Acids Res
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2007
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3.80
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3
|
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila.
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Nucleic Acids Res
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2010
|
2.84
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4
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REDfly: a Regulatory Element Database for Drosophila.
|
Bioinformatics
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2005
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2.13
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5
|
Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
|
Bioinformatics
|
2004
|
1.62
|
6
|
An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes.
|
PLoS Genet
|
2006
|
1.51
|
7
|
Reciprocal regulatory interactions between the Notch and Ras signaling pathways in the Drosophila embryonic mesoderm.
|
Dev Biol
|
2002
|
1.45
|
8
|
Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses.
|
Genome Biol
|
2007
|
1.38
|
9
|
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset.
|
BMC Bioinformatics
|
2010
|
1.34
|
10
|
A combinatorial code for pattern formation in Drosophila oogenesis.
|
Dev Cell
|
2008
|
1.33
|
11
|
Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs.
|
Genome Biol
|
2008
|
1.29
|
12
|
Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse.
|
Dev Cell
|
2009
|
1.20
|
13
|
Vector-dependent gene expression driven by insulated P-element reporter vectors.
|
Fly (Austin)
|
2007
|
0.96
|
14
|
Combinatorial peptide ligand library treatment followed by a dual-enzyme, dual-activation approach on a nanoflow liquid chromatography/orbitrap/electron transfer dissociation system for comprehensive analysis of swine plasma proteome.
|
Anal Chem
|
2011
|
0.95
|
15
|
Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison.
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Nucleic Acids Res
|
2011
|
0.87
|
16
|
(Re)modeling the transcriptional enhancer.
|
Nat Genet
|
2006
|
0.86
|
17
|
Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster.
|
BMC Genomics
|
2009
|
0.84
|
18
|
Genome-wide search identifies Ccnd2 as a direct transcriptional target of Elf5 in mouse mammary gland.
|
BMC Mol Biol
|
2010
|
0.84
|
19
|
Identifying transcriptional cis-regulatory modules in animal genomes.
|
Wiley Interdiscip Rev Dev Biol
|
2014
|
0.82
|
20
|
A wholly defined Agilent microarray spike-in dataset.
|
Bioinformatics
|
2011
|
0.82
|
21
|
Identification of receptor-tyrosine-kinase-signaling target genes reveals receptor-specific activities and pathway branchpoints during Drosophila development.
|
Genetics
|
2009
|
0.76
|