Marc S Halfon

Author PubWeight™ 35.06‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biol 2005 8.32
2 ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res 2007 3.80
3 REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila. Nucleic Acids Res 2010 2.84
4 REDfly: a Regulatory Element Database for Drosophila. Bioinformatics 2005 2.13
5 Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. Bioinformatics 2004 1.62
6 An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes. PLoS Genet 2006 1.51
7 Reciprocal regulatory interactions between the Notch and Ras signaling pathways in the Drosophila embryonic mesoderm. Dev Biol 2002 1.45
8 Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses. Genome Biol 2007 1.38
9 Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset. BMC Bioinformatics 2010 1.34
10 A combinatorial code for pattern formation in Drosophila oogenesis. Dev Cell 2008 1.33
11 Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs. Genome Biol 2008 1.29
12 Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse. Dev Cell 2009 1.20
13 Vector-dependent gene expression driven by insulated P-element reporter vectors. Fly (Austin) 2007 0.96
14 Combinatorial peptide ligand library treatment followed by a dual-enzyme, dual-activation approach on a nanoflow liquid chromatography/orbitrap/electron transfer dissociation system for comprehensive analysis of swine plasma proteome. Anal Chem 2011 0.95
15 Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison. Nucleic Acids Res 2011 0.87
16 (Re)modeling the transcriptional enhancer. Nat Genet 2006 0.86
17 Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster. BMC Genomics 2009 0.84
18 Genome-wide search identifies Ccnd2 as a direct transcriptional target of Elf5 in mouse mammary gland. BMC Mol Biol 2010 0.84
19 Identifying transcriptional cis-regulatory modules in animal genomes. Wiley Interdiscip Rev Dev Biol 2014 0.82
20 A wholly defined Agilent microarray spike-in dataset. Bioinformatics 2011 0.82
21 Identification of receptor-tyrosine-kinase-signaling target genes reveals receptor-specific activities and pathway branchpoints during Drosophila development. Genetics 2009 0.76