Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry.

PubWeight™: 1.43‹?› | Rank: Top 5%

🔗 View Article (PMID 15695462)

Published in Plant Cell Physiol on February 02, 2005

Authors

Takatoshi Kiba1, Takahito Naitou, Nobuya Koizumi, Takafumi Yamashino, Hitoshi Sakakibara, Takeshi Mizuno

Author Affiliations

1: Laboratory of Molecular Microbiology, School of Agriculture, Nagoya University, Chikusa-ku, Nagoya, 464-8601 Japan.

Articles citing this

Transcription analysis of arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescence. Plant Physiol (2006) 2.57

A subset of Arabidopsis AP2 transcription factors mediates cytokinin responses in concert with a two-component pathway. Proc Natl Acad Sci U S A (2006) 1.89

Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. Plant Physiol (2008) 1.66

Distinct expression patterns of natural antisense transcripts in Arabidopsis. Plant Physiol (2007) 1.52

Cytokinins. Arabidopsis Book (2014) 1.37

Unraveling the evolution of cytokinin signaling. Plant Physiol (2009) 1.32

Two-component signaling elements and histidyl-aspartyl phosphorelays. Arabidopsis Book (2008) 1.32

Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members. Plant J (2009) 1.28

Cytokinin stimulates chloroplast transcription in detached barley leaves. Plant Physiol (2008) 1.23

Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis. Plant Physiol (2006) 1.20

GNC and CGA1 modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression in Arabidopsis. PLoS One (2011) 1.09

Genome-wide expression profiling of ARABIDOPSIS RESPONSE REGULATOR 7(ARR7) overexpression in cytokinin response. Mol Genet Genomics (2006) 1.09

Gene regulation by cytokinin in Arabidopsis. Front Plant Sci (2012) 1.09

Functional characterization of the GATA transcription factors GNC and CGA1 reveals their key role in chloroplast development, growth, and division in Arabidopsis. Plant Physiol (2012) 1.06

Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean. DNA Res (2010) 1.03

Transcript profiling of cytokinin action in Arabidopsis roots and shoots discovers largely similar but also organ-specific responses. BMC Plant Biol (2012) 1.03

Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Plant Physiol (2007) 1.02

The CRF domain defines cytokinin response factor proteins in plants. BMC Plant Biol (2010) 0.98

A transcriptome-based characterization of habituation in plant tissue culture. Plant Physiol (2006) 0.95

Functional Associations by Response Overlap (FARO), a functional genomics approach matching gene expression phenotypes. PLoS One (2007) 0.95

SCF(KMD) controls cytokinin signaling by regulating the degradation of type-B response regulators. Proc Natl Acad Sci U S A (2013) 0.95

A genome-wide compilation of the two-component systems in Lotus japonicus. DNA Res (2009) 0.94

Non-recognition-of-BTH4, an Arabidopsis mediator subunit homolog, is necessary for development and response to salicylic acid. Plant Cell (2012) 0.94

Early cytokinin response proteins and phosphoproteins of Arabidopsis thaliana identified by proteome and phosphoproteome profiling. J Exp Bot (2010) 0.93

Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula. Plant Cell (2012) 0.92

Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Plant Physiol (2013) 0.91

Changes in the synthesis of rubisco in rice leaves in relation to senescence and N influx. Ann Bot (2007) 0.91

B-GATA transcription factors - insights into their structure, regulation, and role in plant development. Front Plant Sci (2015) 0.90

The more, the merrier: cytokinin signaling beyond Arabidopsis. Plant Signal Behav (2010) 0.89

Nitrate-Regulated Glutaredoxins Control Arabidopsis Primary Root Growth. Plant Physiol (2015) 0.86

Comparative transcriptome analysis of short fiber mutants Ligon-lintless 1 and 2 reveals common mechanisms pertinent to fiber elongation in cotton (Gossypium hirsutum L.). PLoS One (2014) 0.85

Regulatory roles of cytokinins and cytokinin signaling in response to potassium deficiency in Arabidopsis. PLoS One (2012) 0.83

Transcriptome analysis of cytokinin response in tomato leaves. PLoS One (2013) 0.83

Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation. J Exp Bot (2013) 0.82

Role of AUX1 in the control of organ identity during in vitro organogenesis and in mediating tissue specific auxin and cytokinin interaction in Arabidopsis. Planta (2008) 0.82

Solanum lycopersicum cytokinin response factor (SlCRF) genes: characterization of CRF domain-containing ERF genes in tomato. J Exp Bot (2011) 0.82

Genome-wide identification, phylogeny, duplication, and expression analyses of two-component system genes in Chinese cabbage (Brassica rapa ssp. pekinensis). DNA Res (2014) 0.81

WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol (2015) 0.79

Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture. Plant Physiol (2013) 0.79

Integration of shot-gun proteomics and bioinformatics analysis to explore plant hormone responses. BMC Bioinformatics (2012) 0.79

A salt stress-responsive cytokinin receptor homologue isolated from Medicago sativa nodules. Planta (2007) 0.79

Expression of root-related transcription factors associated with flooding tolerance of soybean (Glycine max). Int J Mol Sci (2014) 0.78

NPKS uptake, sensing, and signaling and miRNAs in plant nutrient stress. Protoplasma (2015) 0.76

Identification of a stable major-effect QTL (Parth 2.1) controlling parthenocarpy in cucumber and associated candidate gene analysis via whole genome re-sequencing. BMC Plant Biol (2016) 0.75

Characterization of the cytokinin-responsive transcriptome in rice. BMC Plant Biol (2016) 0.75

Inheritance, fine-mapping, and candidate gene analyses of resistance to soybean mosaic virus strain SC5 in soybean. Mol Genet Genomics (2017) 0.75

Articles by these authors

Cytokinin oxidase regulates rice grain production. Science (2005) 5.60

Dynein structure and power stroke. Nature (2003) 4.25

The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water. Nature (2009) 3.74

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant J (2008) 3.73

Transcriptome analysis of all two-component regulatory system mutants of Escherichia coli K-12. Mol Microbiol (2002) 3.68

Direct control of shoot meristem activity by a cytokinin-activating enzyme. Nature (2007) 3.27

Delayed leaf senescence induces extreme drought tolerance in a flowering plant. Proc Natl Acad Sci U S A (2007) 2.65

PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock. Plant Cell (2010) 2.57

The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRR1-overexpressing plants. Plant Cell Physiol (2002) 2.46

Auxin controls local cytokinin biosynthesis in the nodal stem in apical dominance. Plant J (2006) 2.02

DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. Plant J (2007) 1.99

Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa. Plant Cell Physiol (2009) 1.99

PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana. Plant Cell Physiol (2005) 1.97

Regulation of cytokinin biosynthesis, compartmentalization and translocation. J Exp Bot (2007) 1.88

Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coli. J Bacteriol (2003) 1.87

Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice. Plant Cell Physiol (2008) 1.77

ATP-driven remodeling of the linker domain in the dynein motor. Structure (2012) 1.74

Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana. Plant Cell Physiol (2004) 1.73

Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model. Mol Syst Biol (2010) 1.73

Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production. Plant Cell (2006) 1.72

Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response. Plant Cell Physiol (2009) 1.70

Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators. Plant Cell (2002) 1.70

Analysis of cytokinin mutants and regulation of cytokinin metabolic genes reveals important regulatory roles of cytokinins in drought, salt and abscisic acid responses, and abscisic acid biosynthesis. Plant Cell (2011) 1.66

Arabidopsis CYP735A1 and CYP735A2 encode cytokinin hydroxylases that catalyze the biosynthesis of trans-Zeatin. J Biol Chem (2004) 1.65

The AP2/ERF transcription factor WIND1 controls cell dedifferentiation in Arabidopsis. Curr Biol (2011) 1.64

AtIPT3 is a key determinant of nitrate-dependent cytokinin biosynthesis in Arabidopsis. Plant Cell Physiol (2004) 1.64

A Link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol (2003) 1.63

Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism. Plant Cell Physiol (2007) 1.59

The Arabidopsis B-box zinc finger family. Plant Cell (2009) 1.57

The circadian clock regulates the photoperiodic response of hypocotyl elongation through a coincidence mechanism in Arabidopsis thaliana. Plant Cell Physiol (2009) 1.55

Targeted degradation of PSEUDO-RESPONSE REGULATOR5 by an SCFZTL complex regulates clock function and photomorphogenesis in Arabidopsis thaliana. Plant Cell (2007) 1.52

The GID1-mediated gibberellin perception mechanism is conserved in the Lycophyte Selaginella moellendorffii but not in the Bryophyte Physcomitrella patens. Plant Cell (2007) 1.52

Phloem-transported cytokinin regulates polar auxin transport and maintains vascular pattern in the root meristem. Curr Biol (2011) 1.51

Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis. Plant Cell (2009) 1.50

Mesophyll conductance decreases in the wild type but not in an ABA-deficient mutant (aba1) of Nicotiana plumbaginifolia under drought conditions. Plant Cell Environ (2014) 1.49

The architecture of outer dynein arms in situ. J Mol Biol (2007) 1.49

The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Plant Cell Physiol (2003) 1.49

Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids. Plant J (2013) 1.49

Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination. Proc Natl Acad Sci U S A (2009) 1.48

The cytokinin-activated transcription factor ARR2 promotes plant immunity via TGA3/NPR1-dependent salicylic acid signaling in Arabidopsis. Dev Cell (2010) 1.45

Three type-B response regulators, ARR1, ARR10 and ARR12, play essential but redundant roles in cytokinin signal transduction throughout the life cycle of Arabidopsis thaliana. Plant Cell Physiol (2007) 1.44

Molecular architecture of inner dynein arms in situ in Chlamydomonas reinhardtii flagella. J Cell Biol (2008) 1.44

Two cytokinin receptors of Arabidopsis thaliana, CRE1/AHK4 and AHK3, differ in their ligand specificity in a bacterial assay. Plant Cell Physiol (2004) 1.43

Mouse geminin inhibits not only Cdt1-MCM6 interactions but also a novel intrinsic Cdt1 DNA binding activity. J Biol Chem (2002) 1.43

Molecular characterization of cytokinin-responsive histidine kinases in maize. Differential ligand preferences and response to cis-zeatin. Plant Physiol (2004) 1.43

Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol (2006) 1.41

The Arabidopsis nitrate transporter NRT2.4 plays a double role in roots and shoots of nitrogen-starved plants. Plant Cell (2012) 1.41

Asymmetry of inner dynein arms and inter-doublet links in Chlamydomonas flagella. J Cell Biol (2009) 1.40

Involvement of auxin and brassinosteroid in the regulation of petiole elongation under the shade. Plant Physiol (2010) 1.39

Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice. Plant Physiol (2006) 1.39

Hormonal control of nitrogen acquisition: roles of auxin, abscisic acid, and cytokinin. J Exp Bot (2010) 1.34

Suppression of α-amylase genes improves quality of rice grain ripened under high temperature. Plant Biotechnol J (2012) 1.33

Transcriptional repressor PRR5 directly regulates clock-output pathways. Proc Natl Acad Sci U S A (2012) 1.33

Type-B ARR transcription factors, ARR10 and ARR12, are implicated in cytokinin-mediated regulation of protoxylem differentiation in roots of Arabidopsis thaliana. Plant Cell Physiol (2006) 1.33

Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice, and soybean. DNA Res (2011) 1.32

In vivo and in vitro characterization of the ARR11 response regulator implicated in the His-to-Asp phosphorelay signal transduction in Arabidopsis thaliana. Plant Cell Physiol (2003) 1.31

The type-A response regulator, ARR15, acts as a negative regulator in the cytokinin-mediated signal transduction in Arabidopsis thaliana. Plant Cell Physiol (2003) 1.30

The Arabidopsis pseudo-response regulators, PRR5 and PRR7, coordinately play essential roles for circadian clock function. Plant Cell Physiol (2005) 1.29

Cyclin A-Cdk1 regulates the origin firing program in mammalian cells. Proc Natl Acad Sci U S A (2009) 1.29

Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction. Mol Plant Microbe Interact (2010) 1.28

Comparative transcriptome of diurnally oscillating genes and hormone-responsive genes in Arabidopsis thaliana: insight into circadian clock-controlled daily responses to common ambient stresses in plants. Plant Cell Physiol (2008) 1.27

Characterization of the APRR9 pseudo-response regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol (2003) 1.26

Thymine-rich single-stranded DNA activates Mcm4/6/7 helicase on Y-fork and bubble-like substrates. EMBO J (2003) 1.25

Characterization of the ARR15 and ARR16 response regulators with special reference to the cytokinin signaling pathway mediated by the AHK4 histidine kinase in roots of Arabidopsis thaliana. Plant Cell Physiol (2002) 1.24

Genetic linkages of the circadian clock-associated genes, TOC1, CCA1 and LHY, in the photoperiodic control of flowering time in Arabidopsis thaliana. Plant Cell Physiol (2007) 1.23

Nucleotide-induced global conformational changes of flagellar dynein arms revealed by in situ analysis. Nat Struct Mol Biol (2010) 1.22

The common function of a novel subfamily of B-Box zinc finger proteins with reference to circadian-associated events in Arabidopsis thaliana. Biosci Biotechnol Biochem (2008) 1.22

Arabidopsis clock-associated pseudo-response regulators PRR9, PRR7 and PRR5 coordinately and positively regulate flowering time through the canonical CONSTANS-dependent photoperiodic pathway. Plant Cell Physiol (2007) 1.20

Formation of highly twisted ribbons in a carboxymethylcellulase gene-disrupted strain of a cellulose-producing bacterium. J Bacteriol (2012) 1.20

Systematic approaches to using the FOX hunting system to identify useful rice genes. Plant J (2008) 1.20

Distinct isoprenoid origins of cis- and trans-zeatin biosyntheses in Arabidopsis. J Biol Chem (2004) 1.20

Regulation of sulfur-responsive gene expression by exogenously applied cytokinins in Arabidopsis thaliana. Plant Cell Physiol (2002) 1.19

Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time. Biosci Biotechnol Biochem (2005) 1.19

Metabolism and long-distance translocation of cytokinins. J Integr Plant Biol (2010) 1.19

Comparative studies on the type-B response regulators revealing their distinctive properties in the His-to-Asp phosphorelay signal transduction of Arabidopsis thaliana. Plant Cell Physiol (2004) 1.18