Finding community structure in very large networks.

Modularity and community structure in networks. Proc Natl Acad Sci U S A (2006) 17.97

Maps of random walks on complex networks reveal community structure. Proc Natl Acad Sci U S A (2008) 10.42

Resolution limit in community detection. Proc Natl Acad Sci U S A (2006) 6.68

Link communities reveal multiscale complexity in networks. Nature (2010) 5.48

Microbial co-occurrence relationships in the human microbiome. PLoS Comput Biol (2012) 5.35

An information-theoretic framework for resolving community structure in complex networks. Proc Natl Acad Sci U S A (2007) 3.33

Microbial interactions: from networks to models. Nat Rev Microbiol (2012) 3.28

International population movements and regional Plasmodium falciparum malaria elimination strategies. Proc Natl Acad Sci U S A (2010) 2.80

Revealing modular architecture of human brain structural networks by using cortical thickness from MRI. Cereb Cortex (2008) 2.62

Disrupted modularity and local connectivity of brain functional networks in childhood-onset schizophrenia. Front Syst Neurosci (2010) 2.22

Characterizing the community structure of complex networks. PLoS One (2010) 2.13

Science vs conspiracy: collective narratives in the age of misinformation. PLoS One (2015) 1.92

Uncovering patterns of inter-urban trip and spatial interaction from social media check-in data. PLoS One (2014) 1.75

Consensus clustering in complex networks. Sci Rep (2012) 1.73

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. BMC Bioinformatics (2010) 1.72

Delineating geographical regions with networks of human interactions in an extensive set of countries. PLoS One (2013) 1.71

Brain anatomical networks in early human brain development. Neuroimage (2010) 1.59

Development trends of white matter connectivity in the first years of life. PLoS One (2011) 1.52

Trend of Narratives in the Age of Misinformation. PLoS One (2015) 1.52

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia. Genome Res (2013) 1.51

NeMo: Network Module identification in Cytoscape. BMC Bioinformatics (2010) 1.49

Complex network analysis of free-energy landscapes. Proc Natl Acad Sci U S A (2007) 1.44

Recent advances in clustering methods for protein interaction networks. BMC Genomics (2010) 1.40

Functional molecular ecological networks. MBio (2010) 1.37

Graph-theory based parcellation of functional subunits in the brain from resting-state fMRI data. Neuroimage (2010) 1.37

Subtyping attention-deficit/hyperactivity disorder using temperament dimensions: toward biologically based nosologic criteria. JAMA Psychiatry (2014) 1.36

A dictionary of behavioral motifs reveals clusters of genes affecting Caenorhabditis elegans locomotion. Proc Natl Acad Sci U S A (2012) 1.35

The dynamics of social networks among female Asian elephants. BMC Ecol (2011) 1.34

An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways. Sci Rep (2013) 1.26

GLay: community structure analysis of biological networks. Bioinformatics (2010) 1.24

Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules. BMC Cancer (2010) 1.22

A structural approach for finding functional modules from large biological networks. BMC Bioinformatics (2008) 1.22

Modular Brain Networks. Annu Rev Psychol (2015) 1.22

Developmental changes in organization of structural brain networks. Cereb Cortex (2012) 1.21

Network analysis reveals increased integration during emotional and motivational processing. J Neurosci (2012) 1.20

Molecular ecological network analyses. BMC Bioinformatics (2012) 1.19

Altered structural connectivity in neonates at genetic risk for schizophrenia: a combined study using morphological and white matter networks. Neuroimage (2012) 1.18

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2. MBio (2011) 1.18

Towards online multiresolution community detection in large-scale networks. PLoS One (2011) 1.18

Gene signatures related to B-cell proliferation predict influenza vaccine-induced antibody response. Eur J Immunol (2013) 1.15

Understanding Spatiotemporal Patterns of Biking Behavior by Analyzing Massive Bike Sharing Data in Chicago. PLoS One (2015) 1.15

Evidence of community structure in biomedical research grant collaborations. J Biomed Inform (2012) 1.14

Efficient discovery of overlapping communities in massive networks. Proc Natl Acad Sci U S A (2013) 1.12

The identification of gene expression profiles associated with progression of human diabetic neuropathy. Brain (2011) 1.12

Efficiently inferring community structure in bipartite networks. Phys Rev E Stat Nonlin Soft Matter Phys (2014) 1.10

Detecting network modules in fMRI time series: a weighted network analysis approach. Neuroimage (2010) 1.07

Social network analysis to assess the impact of the CTSA on biomedical research grant collaboration. Clin Transl Sci (2014) 1.05

Scalable detection of statistically significant communities and hierarchies, using message passing for modularity. Proc Natl Acad Sci U S A (2014) 1.05

Spontaneous emergence of modularity in cellular networks. J R Soc Interface (2008) 1.04

Exploring the limits of community detection strategies in complex networks. Sci Rep (2013) 1.04

Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network. BMC Syst Biol (2010) 1.03

Detecting communities based on network topology. Sci Rep (2014) 1.02

Anatomy of news consumption on Facebook. Proc Natl Acad Sci U S A (2017) 0.97

Heat shock partially dissociates the overlapping modules of the yeast protein-protein interaction network: a systems level model of adaptation. PLoS Comput Biol (2011) 0.96

Exploring community structure in biological networks with random graphs. BMC Bioinformatics (2014) 0.95

Functional organization of the yeast proteome by a yeast interactome map. Proc Natl Acad Sci U S A (2009) 0.95

Dynamic architecture of a protein kinase. Proc Natl Acad Sci U S A (2014) 0.94

Surprise maximization reveals the community structure of complex networks. Sci Rep (2013) 0.94

A DIseAse MOdule Detection (DIAMOnD) algorithm derived from a systematic analysis of connectivity patterns of disease proteins in the human interactome. PLoS Comput Biol (2015) 0.93

Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice. Nat Med (2016) 0.93

Correlations between community structure and link formation in complex networks. PLoS One (2013) 0.93

Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes. Genome Biol (2016) 0.92

Analysis of the genomic response of human prostate cancer cells to histone deacetylase inhibitors. Epigenetics (2013) 0.92

How networks change with time. Bioinformatics (2012) 0.91

Yeast Protein Interactome topology provides framework for coordinated-functionality. Nucleic Acids Res (2006) 0.90

Discover protein complexes in protein-protein interaction networks using parametric local modularity. BMC Bioinformatics (2010) 0.90

Statistical network analysis for functional MRI: summary networks and group comparisons. Front Comput Neurosci (2014) 0.90

Epidemic spreading on preferred degree adaptive networks. PLoS One (2012) 0.90

Modular organization of brain resting state networks in chronic back pain patients. Front Neuroinform (2010) 0.89

Friendship group position and substance use. Addict Behav (2013) 0.89

Resting-state functional connectivity in late-life depression: higher global connectivity and more long distance connections. Front Psychiatry (2013) 0.88

Multiscale Community Blockmodel for Network Exploration. J Am Stat Assoc (2012) 0.88

Macrostructure from Microstructure: Generating Whole Systems from Ego Networks. Sociol Methodol (2012) 0.87

Functional connectivity networks with and without global signal correction. Front Hum Neurosci (2013) 0.87

An iterative network partition algorithm for accurate identification of dense network modules. Nucleic Acids Res (2011) 0.87

Gene-sharing networks reveal organizing principles of transcriptomes in Arabidopsis and other multicellular organisms. Plant Cell (2012) 0.87

Graph theoretical analysis of developmental patterns of the white matter network. Front Hum Neurosci (2013) 0.87

Salt stress and senescence: identification of cross-talk regulatory components. J Exp Bot (2014) 0.87

The Thermoanaerobacter glycobiome reveals mechanisms of pentose and hexose co-utilization in bacteria. PLoS Genet (2011) 0.86

Ethnicity and population structure in personal naming networks. PLoS One (2011) 0.86

Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks. PLoS Comput Biol (2014) 0.86

Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase. BMC Syst Biol (2009) 0.86

The geography of imported malaria to non-endemic countries: a meta-analysis of nationally reported statistics. Lancet Infect Dis (2016) 0.86

Reducing in fl uenza spreading over the airline network. PLoS Curr (2009) 0.85

Healthcare worker contact networks and the prevention of hospital-acquired infections. PLoS One (2013) 0.85

Metabolic network modularity in archaea depends on growth conditions. PLoS One (2011) 0.85

Identification of unstable network modules reveals disease modules associated with the progression of Alzheimer's disease. PLoS One (2013) 0.85

Gene-specific patterns of expression variation across organs and species. Genome Biol (2016) 0.84

Organization of Anti-Phase Synchronization Pattern in Neural Networks: What are the Key Factors? Front Syst Neurosci (2011) 0.84

Complex Network Clustering by a Multi-objective Evolutionary Algorithm Based on Decomposition and Membrane Structure. Sci Rep (2016) 0.83

Hidden protein folding pathways in free-energy landscapes uncovered by network analysis. J Chem Theory Comput (2012) 0.83

"Follow the leader": a centrality guided clustering and its application to social network analysis. ScientificWorldJournal (2013) 0.83

Clustering of High Throughput Gene Expression Data. Comput Oper Res (2012) 0.83

POLAR MAPPER: a computational tool for integrated visualization of protein interaction networks and mRNA expression data. J R Soc Interface (2008) 0.83

Homophyly/Kinship Model: Naturally Evolving Networks. Sci Rep (2015) 0.83

A Comparative Analysis of Community Detection Algorithms on Artificial Networks. Sci Rep (2016) 0.83

Cutting the wires: modularization of cellular networks for experimental design. Biophys J (2014) 0.83

Multilevel hierarchical kernel spectral clustering for real-life large scale complex networks. PLoS One (2014) 0.83

Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks. Genome Res (2016) 0.82

Finding Communities by Their Centers. Sci Rep (2016) 0.82

Community structure in social and biological networks. Proc Natl Acad Sci U S A (2002) 29.77

Hierarchical structure and the prediction of missing links in networks. Nature (2008) 9.03

Network theory and SARS: predicting outbreak diversity. J Theor Biol (2005) 5.52

From The Cover: Diffusion-based method for producing density-equalizing maps. Proc Natl Acad Sci U S A (2004) 3.80

Identity and search in social networks. Science (2002) 3.56

Identifying the role that animals play in their social networks. Proc Biol Sci (2004) 3.39

Predicting epidemics on directed contact networks. J Theor Biol (2005) 2.89

Community structure in directed networks. Phys Rev Lett (2008) 2.88

Stochastic blockmodels and community structure in networks. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 2.40

Applying network theory to epidemics: control measures for Mycoplasma pneumoniae outbreaks. Emerg Infect Dis (2003) 2.30

Robustness of community structure in networks. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 2.00

A network analysis of committees in the U.S. House of Representatives. Proc Natl Acad Sci U S A (2005) 1.99

Nonequilibrium phase transition in the coevolution of networks and opinions. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 1.98

Spectral redemption in clustering sparse networks. Proc Natl Acad Sci U S A (2013) 1.79

Statistical mechanics of networks. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 1.77

Efficient and principled method for detecting communities in networks. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 1.67

Asymptotic analysis of the stochastic block model for modular networks and its algorithmic applications. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 1.66

Inference and phase transitions in the detection of modules in sparse networks. Phys Rev Lett (2011) 1.62

Random graph models for directed acyclic networks. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 1.52

Computer science. Technological networks and the spread of computer viruses. Science (2004) 1.49

Vertex similarity in networks. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 1.44

Origin of compartmentalization in food webs. Ecology (2010) 1.38

Graph spectra and the detectability of community structure in networks. Phys Rev Lett (2012) 1.34

Origin of degree correlations in the Internet and other networks. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 1.17

Simple model of epidemics with pathogen mutation. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 1.17

Random graphs containing arbitrary distributions of subgraphs. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.13

Competing epidemics on complex networks. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 1.11

Accuracy and scaling phenomena in Internet mapping. Phys Rev Lett (2005) 1.10

Optimal design of spatial distribution networks. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 1.05

Message passing approach for general epidemic models. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 1.01

Exact solutions for models of evolving networks with addition and deletion of nodes. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 1.01

Random hypergraphs and their applications. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.97

Scale invariance in road networks. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.96

Solution of the two-star model of a network. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.95

Transdisciplinary electric power grid science. Proc Natl Acad Sci U S A (2013) 0.90

Spectra of random graphs with arbitrary expected degrees. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.89

Random acyclic networks. Phys Rev Lett (2009) 0.88

Continuum percolation thresholds in two dimensions. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.86

Dynamic networks from hierarchical bayesian graph clustering. PLoS One (2010) 0.86

Solution for the properties of a clustered network. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 0.85

Community structure in the U.S. House of Representatives. Chaos (2006) 0.81

A computational approach to animal breeding. J Theor Biol (2006) 0.80

Coauthorship and citation patterns in the Physical Review. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.80

Automatic filters for the detection of coherent structure in spatiotemporal systems. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.78

Transmission probabilities and durations of immunity for three pathogenic group B Streptococcus serotypes. Infect Genet Evol (2011) 0.75

Convergence of threshold estimates for two-dimensional percolation. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75