Published in Biochim Biophys Acta on December 19, 2004
Conformational selection or induced fit: a flux description of reaction mechanism. Proc Natl Acad Sci U S A (2009) 3.03
Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin. Proc Natl Acad Sci U S A (2007) 1.75
Defining the nature of thermal intermediate in 3 state folding proteins: apoflavodoxin, a study case. PLoS Comput Biol (2012) 0.80
Pseudosymmetry, high copy number and twinning complicate the structure determination of Desulfovibrio desulfuricans (ATCC 29577) flavodoxin. Acta Crystallogr D Biol Crystallogr (2009) 0.80
Biophysical characterization of Entamoeba histolytica phosphoserine aminotransferase (EhPSAT): role of cofactor and domains in stability and subunit assembly. Eur Biophys J (2010) 0.75
Crowded, cell-like environment induces shape changes in aspherical protein. Proc Natl Acad Sci U S A (2008) 1.95
Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Sci (2005) 1.91
Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin. Proc Natl Acad Sci U S A (2007) 1.75
A hyperthermophilic plant-type [2Fe-2S] ferredoxin from Aquifex aeolicus is stabilized by a disulfide bond. Biochemistry (2002) 1.19
Macromolecular crowding modulates folding mechanism of alpha/beta protein apoflavodoxin. Biophys J (2009) 1.16
Mechanisms of protein oligomerization: inhibitor of functional amyloids templates α-synuclein fibrillation. J Am Chem Soc (2012) 1.15
Factors defining effects of macromolecular crowding on protein stability: an in vitro/in silico case study using cytochrome c. Biochemistry (2010) 1.13
Characterization of the folding landscape of monomeric lactose repressor: quantitative comparison of theory and experiment. Proc Natl Acad Sci U S A (2005) 1.12
Mapping the domain structure of the influenza A virus polymerase acidic protein (PA) and its interaction with the basic protein 1 (PB1) subunit. Virology (2008) 1.11
Thermodynamic stability and folding of proteins from hyperthermophilic organisms. FEBS J (2007) 1.10
Macromolecular crowding increases structural content of folded proteins. FEBS Lett (2007) 1.10
Folding, stability and shape of proteins in crowded environments: experimental and computational approaches. Int J Mol Sci (2009) 1.08
The largest protein observed to fold by two-state kinetic mechanism does not obey contact-order correlation. J Am Chem Soc (2003) 1.06
On the precision of experimentally determined protein folding rates and phi-values. Protein Sci (2006) 1.06
Role of cofactors in metalloprotein folding. Q Rev Biophys (2005) 1.02
Role of structural determinants in folding of the sandwich-like protein Pseudomonas aeruginosa azurin. Proc Natl Acad Sci U S A (2005) 1.02
Gold nanoparticles can induce the formation of protein-based aggregates at physiological pH. Nano Lett (2009) 1.01
Cisplatin binds human copper chaperone Atox1 and promotes unfolding in vitro. Proc Natl Acad Sci U S A (2011) 1.00
Copper-transfer mechanism from the human chaperone Atox1 to a metal-binding domain of Wilson disease protein. J Phys Chem B (2010) 0.98
An adaptive mutation in adenylate kinase that increases organismal fitness is linked to stability-activity trade-offs. Protein Eng Des Sel (2007) 0.98
Macromolecular crowding tunes folding landscape of parallel α/β protein, apoflavodoxin. J Am Chem Soc (2010) 0.96
Dissecting homo-heptamer thermodynamics by isothermal titration calorimetry: entropy-driven assembly of co-chaperonin protein 10. Biophys J (2005) 0.96
Phi-value analysis of apo-azurin folding: comparison between experiment and theory. Biochemistry (2006) 0.95
Direct observation of protein unfolded state compaction in the presence of macromolecular crowding. Biophys J (2013) 0.95
The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates. Proc Natl Acad Sci U S A (2005) 0.95
Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin. Proc Natl Acad Sci U S A (2007) 0.95
Folding and assembly pathways of co-chaperonin proteins 10: Origin of bacterial thermostability. Arch Biochem Biophys (2006) 0.93
Approaching the speed limit for Greek Key beta-barrel formation: transition-state movement tunes folding rate of zinc-substituted azurin. Biochim Biophys Acta (2003) 0.92
Unfolding of heptameric co-chaperonin protein follows "fly casting" mechanism: observation of transient nonnative heptamer. J Am Chem Soc (2005) 0.92
Modulation of curli assembly and pellicle biofilm formation by chemical and protein chaperones. Chem Biol (2013) 0.92
Direct optical detection of aptamer conformational changes induced by target molecules. Anal Chem (2009) 0.91
Stability and ATP binding of the nucleotide-binding domain of the Wilson disease protein: effect of the common H1069Q mutation. J Mol Biol (2008) 0.90
Studies of Pseudomonas aeruginosa azurin mutants: cavities in beta-barrel do not affect refolding speed. Biophys J (2002) 0.90
In vitro unfolding of yeast multicopper oxidase Fet3p variants reveals unique role of each metal site. Proc Natl Acad Sci U S A (2008) 0.89
Effect of Hofmeister ions on protein thermal stability: roles of ion hydration and peptide groups? Arch Biochem Biophys (2008) 0.89
Unique complex between bacterial azurin and tumor-suppressor protein p53. Biochem Biophys Res Commun (2005) 0.89
Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability. Biophys J (2010) 0.89
Lysine-60 in copper chaperone Atox1 plays an essential role in adduct formation with a target Wilson disease domain. J Am Chem Soc (2009) 0.88
Folding of Desulfovibrio desulfuricans flavodoxin is accelerated by cofactor fly-casting. Arch Biochem Biophys (2006) 0.88
Role of copper in thermal stability of human ceruloplasmin. Biophys J (2007) 0.87
Kinetic folding and assembly mechanisms differ for two homologous heptamers. J Mol Biol (2006) 0.87
Conserved residues modulate copper release in human copper chaperone Atox1. Proc Natl Acad Sci U S A (2008) 0.87
Impact of cofactor on stability of bacterial (CopZ) and human (Atox1) copper chaperones. Biochim Biophys Acta (2007) 0.87
Interactions between DNA, transcriptional regulator Dreb2a and the Med25 mediator subunit from Arabidopsis thaliana involve conformational changes. Nucleic Acids Res (2012) 0.87
Location and flexibility of the unique C-terminal tail of Aquifex aeolicus co-chaperonin protein 10 as derived by cryo-electron microscopy and biophysical techniques. J Mol Biol (2008) 0.86
Buried water molecules contribute to cytochrome f stability. Arch Biochem Biophys (2002) 0.86
Methionine-121 coordination determines metal specificity in unfolded Pseudomonas aeruginosa azurin. J Biol Inorg Chem (2004) 0.86
In vitro thermodynamic dissection of human copper transfer from chaperone to target protein. PLoS One (2012) 0.86
Determinants for simultaneous binding of copper and platinum to human chaperone Atox1: hitchhiking not hijacking. PLoS One (2013) 0.85
Low stability for monomeric human chaperonin protein 10: interprotein interactions contribute majority of oligomer stability. Arch Biochem Biophys (2002) 0.85
Snapshots of a dynamic folding nucleus in zinc-substituted Pseudomonas aeruginosa azurin. Biochemistry (2005) 0.85
Macromolecular crowding extended to a heptameric system: the Co-chaperonin protein 10. Biochemistry (2011) 0.84
Structure and dynamics of Cu(I) binding in copper chaperones Atox1 and CopZ: a computer simulation study. J Phys Chem B (2008) 0.84
Solvation of the folding-transition state in Pseudomonas aeruginosa azurin is modulated by metal: Solvation of azurin's folding nucleus. Protein Sci (2006) 0.83
Role of metal in folding and stability of copper proteins in vitro. Biochim Biophys Acta (2012) 0.83
Non-linear effects of macromolecular crowding on enzymatic activity of multi-copper oxidase. Biochim Biophys Acta (2009) 0.83
Thermal unfolding of Apo and Holo Desulfovibrio desulfuricans flavodoxin: cofactor stabilizes folded and intermediate states. Biochemistry (2004) 0.83
Effect of inorganic phosphate on FMN binding and loop flexibility in Desulfovibrio desulfuricans apo-flavodoxin. J Mol Biol (2005) 0.83
Folding of an unfolded protein by macromolecular crowding in vitro. Biochemistry (2014) 0.82
Comparison of chemical and thermal protein denaturation by combination of computational and experimental approaches. II. J Chem Phys (2011) 0.82
Differential effects of alcohols on conformational switchovers in alpha-helical and beta-sheet protein models. Biochemistry (2006) 0.82
Presence of the cofactor speeds up folding of Desulfovibrio desulfuricans flavodoxin. Protein Sci (2002) 0.82
An Isc-type extremely thermostable [2Fe-2S] ferredoxin from Aquifex aeolicus. Biochemical, spectroscopic, and unfolding studies. Biochemistry (2003) 0.82
Modulation of α-synuclein fibrillization by ring-fused 2-pyridones: templation and inhibition involve oligomers with different structure. Arch Biochem Biophys (2013) 0.82
Effects of macromolecular crowding on burst phase kinetics of cytochrome c folding. Biochemistry (2012) 0.82
T versus D in the MTCXXC motif of copper transport proteins plays a role in directional metal transport. J Biol Inorg Chem (2014) 0.81
Conformational dynamics of metal-binding domains in Wilson disease protein: molecular insights into selective copper transfer. Biochemistry (2009) 0.81
Quantification of excluded volume effects on the folding landscape of Pseudomonas aeruginosa apoazurin in vitro. Biophys J (2013) 0.81
Discrete roles of copper ions in chemical unfolding of human ceruloplasmin. Biochemistry (2007) 0.81
Role of the unique peptide tail in hyperthermostable Aquifex aeolicus cochaperonin protein 10. Biochemistry (2005) 0.81
Role of copper in folding and stability of cupredoxin-like copper-carrier protein CopC. Arch Biochem Biophys (2007) 0.81
Discovery of ligands for ADP-ribosyltransferases via docking-based virtual screening. J Med Chem (2012) 0.81
Correlation between protein stability cores and protein folding kinetics: a case study on Pseudomonas aeruginosa apo-azurin. Structure (2006) 0.80
Pseudosymmetry, high copy number and twinning complicate the structure determination of Desulfovibrio desulfuricans (ATCC 29577) flavodoxin. Acta Crystallogr D Biol Crystallogr (2009) 0.80
First characterization of co-chaperonin protein 10 from hyper-thermophilic Aquifex aeolicus. Biochem Biophys Res Commun (2004) 0.80
Similar but different: thermodynamic and structural characterization of a pair of enantiomers binding to acetylcholinesterase. Angew Chem Int Ed Engl (2012) 0.79
Differential roles of Met10, Thr11, and Lys60 in structural dynamics of human copper chaperone Atox1. Biochemistry (2009) 0.79
High thermal and chemical stability of Thermus thermophilus seven-iron ferredoxin. Linear clusters form at high pH on polypeptide unfolding. Eur J Biochem (2003) 0.79
Probing the interface in a human co-chaperonin heptamer: residues disrupting oligomeric unfolded state identified. BMC Biochem (2003) 0.79
Folding and assembly of co-chaperonin heptamer probed by forster resonance energy transfer. Arch Biochem Biophys (2007) 0.79
Reaction of platinum anticancer drugs and drug derivatives with a copper transporting protein, Atox1. Biochem Pharmacol (2012) 0.79
How do cofactors modulate protein folding? Protein Pept Lett (2005) 0.79
Interdomain interactions modulate collective dynamics of the metal-binding domains in the Wilson disease protein. J Phys Chem B (2010) 0.78
Tuning of copper-loop flexibility in Bacillus subtilis CopZ copper chaperone: role of conserved residues. J Phys Chem B (2009) 0.78
Interface mutation in heptameric co-chaperonin protein 10 destabilizes subunits but not interfaces. Arch Biochem Biophys (2005) 0.78
Formation of linear three-iron clusters in Aquifex aeolicus two-iron ferredoxins: effect of protein-unfolding speed. Arch Biochem Biophys (2004) 0.78
Can cofactor-binding sites in proteins be flexible? Desulfovibrio desulfuricans flavodoxin binds FMN dimer. Biochemistry (2003) 0.78
Human cytoplasmic copper chaperones Atox1 and CCS exchange copper ions in vitro. Biometals (2015) 0.78
Predicting protein folding cores by empirical potential functions. Arch Biochem Biophys (2008) 0.78
Residue-specific analysis of frustration in the folding landscape of repeat beta/alpha protein apoflavodoxin. J Mol Biol (2009) 0.77
Small pH and salt variations radically alter the thermal stability of metal-binding domains in the copper transporter, Wilson disease protein. J Phys Chem B (2013) 0.77
Med8, Med18, and Med20 subunits of the Mediator head domain are interdependent upon each other for folding and complex formation. Proc Natl Acad Sci U S A (2009) 0.77
Formation of a linear [3Fe-4S] cluster in a seven-iron ferredoxin triggered by polypeptide unfolding. J Biol Inorg Chem (2001) 0.77
Role of cations in stability of acidic protein Desulfovibrio desulfuricans apoflavodoxin. Arch Biochem Biophys (2008) 0.77
Monomer topology defines folding speed of heptamer. Protein Sci (2004) 0.76
If space is provided, bulky modification on the rim of azurin's beta-barrel results in folded protein. FEBS Lett (2002) 0.76
Extended functional repertoire for human copper chaperones. Biomol Concepts (2016) 0.76
A ferredoxin from the thermohalophilic bacterium Rhodothermus marinus. Biochim Biophys Acta (2002) 0.76
Unfolding the unique c-type heme protein, Chlamydomonas reinhardtii cytochrome f. Biochim Biophys Acta (2002) 0.75