Published in Genome Inform on January 01, 2003
Local error estimates dramatically improve the utility of homology models for solving crystal structures by molecular replacement. Structure (2015) 0.84
General overview on structure prediction of twilight-zone proteins. Theor Biol Med Model (2015) 0.78
Acceleration of sequence clustering using longest common subsequence filtering. BMC Bioinformatics (2013) 0.75
Metabolic control of vesicular glutamate transport and release. Neuron (2010) 2.44
Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.89
Vagus nerve stimulation mediates protection from kidney ischemia-reperfusion injury through α7nAChR+ splenocytes. J Clin Invest (2016) 1.56
Hypothalamic orexin stimulates feeding-associated glucose utilization in skeletal muscle via sympathetic nervous system. Cell Metab (2009) 1.51
Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenase. J Mol Biol (2005) 1.49
Structure basis for the regulation of glyceraldehyde-3-phosphate dehydrogenase activity via the intrinsically disordered protein CP12. Structure (2011) 1.46
NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars. Proc Natl Acad Sci U S A (2013) 1.42
Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure. Physiol Genomics (2003) 1.39
TCC: an R package for comparing tag count data with robust normalization strategies. BMC Bioinformatics (2013) 1.35
ROKU: a novel method for identification of tissue-specific genes. BMC Bioinformatics (2006) 1.35
Pioglitazone prevents alcohol-induced fatty liver in rats through up-regulation of c-Met. Gastroenterology (2004) 1.35
Muscarinic receptor activation modulates granule cell excitability and potentiates inhibition onto mitral cells in the rat olfactory bulb. J Neurosci (2007) 1.34
IgEb immune complexes activate macrophages through FcgammaRIV binding. Nat Immunol (2007) 1.27
A weighted average difference method for detecting differentially expressed genes from microarray data. Algorithms Mol Biol (2008) 1.27
Dynamic change of chromatin conformation in response to hypoxia enhances the expression of GLUT3 (SLC2A3) by cooperative interaction of hypoxia-inducible factor 1 and KDM3A. Mol Cell Biol (2012) 1.26
Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity. Algorithms Mol Biol (2009) 1.24
Crystal structure of the terminal oxygenase component of cumene dioxygenase from Pseudomonas fluorescens IP01. J Bacteriol (2005) 1.23
Crystal structure of Thermotoga maritima alpha-L-fucosidase. Insights into the catalytic mechanism and the molecular basis for fucosidosis. J Biol Chem (2004) 1.20
Autosomal dominant leukodystrophy with axonal spheroids and pigmented glia: clinical and neuropathological characteristics. Acta Neuropathol (2005) 1.16
NARROW LEAF 7 controls leaf shape mediated by auxin in rice. Mol Genet Genomics (2008) 1.15
Characterization of the interaction between interleukin-13 and interleukin-13 receptors. J Biol Chem (2005) 1.12
Structural and functional characterization of HQL-79, an orally selective inhibitor of human hematopoietic prostaglandin D synthase. J Biol Chem (2006) 1.12
Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases. Structure (2002) 1.10
Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide. J Biochem (2009) 1.07
Novel cation-pi interaction revealed by crystal structure of thermoalkalophilic lipase. Proteins (2008) 1.06
Spatially selective hormonal control of RAP2.6L and ANAC071 transcription factors involved in tissue reunion in Arabidopsis. Proc Natl Acad Sci U S A (2011) 1.05
The silkworm W chromosome is a source of female-enriched piRNAs. RNA (2011) 1.04
Protein crystal growth with a two-liquid system and stirring solution. J Synchrotron Radiat (2003) 1.03
Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate. Proc Natl Acad Sci U S A (2008) 1.03
A normalization strategy for comparing tag count data. Algorithms Mol Biol (2012) 1.03
Crystallization and preliminary X-ray diffraction analysis of a chitin-binding domain of hyperthermophilic chitinase from Pyrococcus furiosus. Acta Crystallogr Sect F Struct Biol Cryst Commun (2005) 1.02
High expression of p300 in HCC predicts shortened overall survival in association with enhanced epithelial mesenchymal transition of HCC cells. Cancer Lett (2011) 1.01
Highly accurate method for ligand-binding site prediction in unbound state (apo) protein structures. Proteins (2008) 1.01
Conformational plasticity of RNA for target recognition as revealed by the 2.15 A crystal structure of a human IgG-aptamer complex. Nucleic Acids Res (2010) 0.99
The presenilin 1 deltaE9 mutation gives enhanced basal phospholipase C activity and a resultant increase in intracellular calcium concentrations. J Biol Chem (2002) 0.99
Zygotic amplification of secondary piRNAs during silkworm embryogenesis. RNA (2011) 0.99
Blockade of interleukin-6 signaling enhances hepatic steatosis but improves liver injury in methionine choline-deficient diet-fed mice. Lab Invest (2010) 0.98
Soprano singing in gibbons. Am J Phys Anthropol (2012) 0.98
Structural basis of inter-protein electron transfer for nitrite reduction in denitrification. Nature (2009) 0.98
Diffusion-weighted magnetic resonance images in a patient with neuropsychiatric lupus. J Clin Neurosci (2007) 0.97
Prognostic impact of fecal pH in critically ill patients. Crit Care (2012) 0.96
Relapse of hepatitis C in a pegylated-interferon-alpha-2b plus ribavirin-treated sustained virological responder. Hepatol Res (2010) 0.95
Minimum free energy path of ligand-induced transition in adenylate kinase. PLoS Comput Biol (2012) 0.95
RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots. Plant Cell Physiol (2011) 0.95
Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1. Proteins (2006) 0.95
Acid-induced sweetness of neoculin is ascribed to its pH-dependent agonistic-antagonistic interaction with human sweet taste receptor. FASEB J (2008) 0.95
Xanthene dyes induce membrane permeabilization of bacteria and erythrocytes by photoinactivation. Photochem Photobiol (2012) 0.95
Anti-metatype peptides, a molecular tool with high sensitivity and specificity to monitor small ligands. Anal Biochem (2009) 0.94
Structural basis of compound recognition by adenosine deaminase. Biochemistry (2005) 0.93
A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos. Plant J (2009) 0.93
Prevalence of and risk factors for non-alcoholic fatty liver disease in a non-obese Japanese population, 2011-2012. J Gastroenterol (2014) 0.93
Evaluating methods for ranking differentially expressed genes applied to microArray quality control data. BMC Bioinformatics (2011) 0.93
Influence of early cerebrospinal fluid-guided diagnosis and early high-dose corticosteroid therapy on ocular outcomes of Vogt-Koyanagi-Harada disease. Int Ophthalmol (2007) 0.92
Up-regulation of genes related to the ubiquitin-proteasome system in the brown adipose tissue of 24-h-fasted rats. Biosci Biotechnol Biochem (2008) 0.92
Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: implications for catalytic mechanism. Protein Sci (2008) 0.91
Disorder-to-order transition of an intrinsically disordered region of sortase revealed by multiscale enhanced sampling. J Am Chem Soc (2012) 0.90
Leptin deficiency enhances sensitivity of rats to alcoholic steatohepatitis through suppression of metallothionein. Am J Physiol Gastrointest Liver Physiol (2004) 0.90
Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus. Acta Crystallogr Sect F Struct Biol Cryst Commun (2006) 0.90
Structure and function of a hexameric copper-containing nitrite reductase. Proc Natl Acad Sci U S A (2007) 0.90
Structure of E. coli ketopantoate hydroxymethyl transferase complexed with ketopantoate and Mg2+, solved by locating 160 selenomethionine sites. Structure (2003) 0.90
Folding free-energy landscape of a 10-residue mini-protein, chignolin. FEBS Lett (2006) 0.89
A non-canonical DNA structure enables homologous recombination in various genetic systems. J Biol Chem (2009) 0.89
Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate. J Mol Biol (2002) 0.89
P70 S6 kinase mediates tau phosphorylation and synthesis. FEBS Lett (2005) 0.89
Water-mediated recognition of simple alkyl chains by heart-type fatty-acid-binding protein. Angew Chem Int Ed Engl (2014) 0.88
Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1. Proteins (2006) 0.88
Specific Interactions between the ferredoxin and terminal oxygenase components of a class IIB Rieske nonheme iron oxygenase, carbazole 1,9a-dioxygenase. J Mol Biol (2009) 0.88
Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method. Biochem Biophys Res Commun (2002) 0.88
NPH3- and PGP-like genes are exclusively expressed in the apical tip region essential for blue-light perception and lateral auxin transport in maize coleoptiles. J Exp Bot (2011) 0.87
Crystallization and preliminary neutron diffraction studies of HIV-1 protease cocrystallized with inhibitor KNI-272. Acta Crystallogr Sect F Struct Biol Cryst Commun (2008) 0.87
Crystal structure of the superfamily 1 helicase from Tomato mosaic virus. J Virol (2012) 0.87
Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications. J Biol Chem (2012) 0.87
Targeting BIG3-PHB2 interaction to overcome tamoxifen resistance in breast cancer cells. Nat Commun (2013) 0.86
C(sp3)-H bond hydroxylation catalyzed by myoglobin reconstituted with manganese porphycene. J Am Chem Soc (2013) 0.86
Identification and modulation of the key amino acid residue responsible for the pH sensitivity of neoculin, a taste-modifying protein. PLoS One (2011) 0.86
Structural and mutational analysis of Trypanosoma brucei prostaglandin H2 reductase provides insight into the catalytic mechanism of aldo-ketoreductases. J Biol Chem (2005) 0.86
Impaired feedforward inhibition of the thalamocortical projection in epileptic Ca2+ channel mutant mice, tottering. J Neurosci (2006) 0.86
Crystal structure of neoculin: insights into its sweetness and taste-modifying activity. J Mol Biol (2006) 0.86
Mutually exclusive expression of Gαia and Gα14 reveals diversification of taste receptor cells in zebrafish. J Comp Neurol (2011) 0.86
The effect of electrical muscle stimulation on the prevention of disuse muscle atrophy in patients with consciousness disturbance in the intensive care unit. J Crit Care (2013) 0.86
Mechanism for folate-independent aldolase reaction catalyzed by serine hydroxymethyltransferase. FEBS J (2011) 0.85
Solution stirring initiates nucleation and improves the quality of adenosine deaminase crystals. Acta Crystallogr D Biol Crystallogr (2005) 0.85
Zinc-induced anti-apoptotic effects in SH-SY5Y neuroblastoma cells via the extracellular signal-regulated kinase 1/2. Brain Res Mol Brain Res (2005) 0.85
Blockade of IL-6 signaling exacerbates liver injury and suppresses antiapoptotic gene expression in methionine choline-deficient diet-fed db/db mice. Lab Invest (2011) 0.85
Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate. J Mol Biol (2012) 0.84
Potential for assessing quality of protein structure based on contact number prediction. Proteins (2006) 0.84
Microbial production of sensory-active miraculin. Biochem Biophys Res Commun (2007) 0.84
Association of Omi/HtrA2 with γ-secretase in mitochondria. Neurochem Int (2010) 0.84