PubRank

Siewert J Marrink

Author PubWeight™ 61.06‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 The molecular face of lipid rafts in model membranes. Proc Natl Acad Sci U S A 2008 2.24
2 Antimicrobial peptides in action. J Am Chem Soc 2006 2.09
3 Polarizable water model for the coarse-grained MARTINI force field. PLoS Comput Biol 2010 1.76
4 Molecular dynamics simulations of hydrophilic pores in lipid bilayers. Biophys J 2004 1.65
5 Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes. Proc Natl Acad Sci U S A 2011 1.50
6 Phytochemicals perturb membranes and promiscuously alter protein function. ACS Chem Biol 2014 1.39
7 Molecular view of cholesterol flip-flop and chemical potential in different membrane environments. J Am Chem Soc 2009 1.33
8 3D pressure field in lipid membranes and membrane-protein complexes. Phys Rev Lett 2009 1.30
9 Release of content through mechano-sensitive gates in pressurized liposomes. Proc Natl Acad Sci U S A 2010 1.26
10 The molecular mechanism of lipid monolayer collapse. Proc Natl Acad Sci U S A 2008 1.26
11 Mechanosensitive membrane channels in action. Biophys J 2008 1.25
12 Does isoprene protect plant membranes from thermal shock? A molecular dynamics study. Biochim Biophys Acta 2006 1.21
13 Lipid organization of the plasma membrane. J Am Chem Soc 2014 1.20
14 Structural determinants of the supramolecular organization of G protein-coupled receptors in bilayers. J Am Chem Soc 2012 1.20
15 Curvature effects on lipid packing and dynamics in liposomes revealed by coarse grained molecular dynamics simulations. Phys Chem Chem Phys 2009 1.14
16 Transmembrane helices can induce domain formation in crowded model membranes. Biochim Biophys Acta 2011 1.12
17 Partitioning of lipids at domain boundaries in model membranes. Biophys J 2010 1.10
18 Reconstruction of atomistic details from coarse-grained structures. J Comput Chem 2010 1.10
19 Membrane poration by antimicrobial peptides combining atomistic and coarse-grained descriptions. Faraday Discuss 2010 1.09
20 Molecular mechanism of cyclodextrin mediated cholesterol extraction. PLoS Comput Biol 2011 1.08
21 Molecular dynamics simulation of the spontaneous formation of a small DPPC vesicle in water in atomistic detail. J Am Chem Soc 2004 1.06
22 Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes. Phys Chem Chem Phys 2010 1.05
23 Computational microscopy of cyclodextrin mediated cholesterol extraction from lipid model membranes. Sci Rep 2013 1.05
24 Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites. Phys Chem Chem Phys 2011 1.04
25 Molecular structure of the lecithin ripple phase. Proc Natl Acad Sci U S A 2005 1.02
26 Pressure-area isotherm of a lipid monolayer from molecular dynamics simulations. Langmuir 2007 1.00
27 Stability of asymmetric lipid bilayers assessed by molecular dynamics simulations. J Am Chem Soc 2009 1.00
28 Application of mean field boundary potentials in simulations of lipid vesicles. J Phys Chem B 2008 0.98
29 Influence of hydrophobic mismatch and amino acid composition on the lateral diffusion of transmembrane peptides. Biophys J 2010 0.98
30 Cholesterol in bilayers with PUFA chains: doping with DMPC or POPC results in sterol reorientation and membrane-domain formation. Biochemistry 2010 0.98
31 Mixing MARTINI: electrostatic coupling in hybrid atomistic-coarse-grained biomolecular simulations. J Phys Chem B 2013 0.97
32 A single bicontinuous cubic phase induced by fusion peptides. J Am Chem Soc 2009 0.96
33 Molecular view on protein sorting into liquid-ordered membrane domains mediated by gangliosides and lipid anchors. Faraday Discuss 2013 0.96
34 Molecular view of the role of fusion peptides in promoting positive membrane curvature. J Am Chem Soc 2012 0.95
35 Computationally designed libraries for rapid enzyme stabilization. Protein Eng Des Sel 2014 0.92
36 Lipid acrobatics in the membrane fusion arena. Curr Top Membr 2011 0.92
37 Structural investigation of MscL gating using experimental data and coarse grained MD simulations. PLoS Comput Biol 2012 0.91
38 The molecular basis for antimicrobial activity of pore-forming cyclic peptides. Biophys J 2011 0.91
39 Molecular plasticity regulates oligomerization and cytotoxicity of the multipeptide-length amyloid-β peptide pool. J Biol Chem 2012 0.90
40 Protein shape change has a major effect on the gating energy of a mechanosensitive channel. Biophys J 2011 0.89
41 Gaussian curvature elasticity determined from global shape transformations and local stress distributions: a comparative study using the MARTINI model. Faraday Discuss 2013 0.89
42 Comment on "On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular models" by M. Winger, D. Trzesniak, R. Baron and W. F. van Gunsteren, Phys. Chem. Chem. Phys., 2009, 11, 1934. Phys Chem Chem Phys 2010 0.87
43 Enantioselective enzymes by computational design and in silico screening. Angew Chem Int Ed Engl 2015 0.86
44 Comparison of thermodynamic properties of coarse-grained and atomic-level simulation models. Chemphyschem 2007 0.86
45 Structural basis for the enhanced activity of cyclic antimicrobial peptides: the case of BPC194. Biochim Biophys Acta 2011 0.85
46 Determining equilibrium constants for dimerization reactions from molecular dynamics simulations. J Comput Chem 2011 0.84
47 Lateral pressure profiles in lipid monolayers. Faraday Discuss 2010 0.84
48 Molecular structure of membrane tethers. Biophys J 2012 0.82
49 Coarse-grain modelling of protein-protein interactions. Curr Opin Struct Biol 2013 0.81
50 In silico design of robust bolalipid membranes. Biomacromolecules 2011 0.81
51 Disaccharides impact the lateral organization of lipid membranes. J Am Chem Soc 2014 0.78
52 Amylose folding under the influence of lipids. Carbohydr Res 2012 0.78
53 Computational library design for increasing haloalkane dehalogenase stability. Chembiochem 2014 0.77
54 Defined lipid analogues induce transient channels to facilitate drug-membrane traversal and circumvent cancer therapy resistance. Sci Rep 2013 0.77
55 Computationally efficient and accurate enantioselectivity modeling by clusters of molecular dynamics simulations. J Chem Inf Model 2014 0.77
56 Anomalous viscosity effect in the early stages of the ion-assisted adhesion/fusion event between lipid bilayers: a theoretical and computational study. J Chem Phys 2013 0.76
57 MARTINI coarse-grained model for crystalline cellulose microfibers. J Phys Chem B 2015 0.76
58 Bulk Heterojunction Morphologies with Atomistic Resolution from Coarse-Grain Solvent Evaporation Simulations. J Am Chem Soc 2017 0.75
59 Disturb or stabilize? A molecular dynamics study of the effects of resorcinolic lipids on phospholipid bilayers. Biophys J 2009 0.75
60 Atomistic and Coarse Grain Topologies for the Cofactors Associated with the Photosystem II Core Complex. J Phys Chem B 2015 0.75
61 Correction to "Atomistic and Coarse Grain Topologies for the Cofactors Associated with the PhotoSystem II Core Complex". J Phys Chem B 2015 0.75
62 Intramolecular photostabilization via triplet-state quenching: design principles to make organic fluorophores "self-healing". Faraday Discuss 2015 0.75
63 Establishing conditions for simulating hydrophobic solutes in electric fields by molecular dynamics: effects of the long-range van der Waals treatment on the apparent particle mobility. J Mol Model 2014 0.75
64 Ironing out their differences: dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase. ACS Chem Biol 2015 0.75