Published in BMC Bioinformatics on April 08, 2005
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Retracted TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol (2004) 8.78
Ultrafast approximation for phylogenetic bootstrap. Mol Biol Evol (2013) 4.62
Unexpected complexity of the Wnt gene family in a sea anemone. Nature (2005) 3.51
Updating benchtop sequencing performance comparison. Nat Biotechnol (2013) 2.66
Genome-wide RNAi screen identifies genes involved in intestinal pathogenic bacterial infection. Science (2009) 2.47
A phylogenomic approach to resolve the arthropod tree of life. Mol Biol Evol (2010) 2.38
HaMStR: profile hidden markov model based search for orthologs in ESTs. BMC Evol Biol (2009) 2.35
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Recent origin and cultural reversion of a hunter-gatherer group. PLoS Biol (2005) 1.75
Pegylated granulocyte colony-stimulating factor mobilizes CD34+ cells with different stem and progenitor subsets and distinct functional properties in comparison with unconjugated granulocyte colony-stimulating factor. Haematologica (2008) 1.74
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Mapping human genetic ancestry. Mol Biol Evol (2007) 1.28
Simultaneous statistical multiple alignment and phylogeny reconstruction. Syst Biol (2005) 1.21
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Functional and phylogenetic properties of the pore-forming beta-barrel transporters of the Omp85 family. J Biol Chem (2006) 1.18
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets. Algorithms Mol Biol (2010) 1.17
Gene expression profiling for molecular distinction and characterization of laser captured primary lung cancers. J Transl Med (2008) 1.15
Rooted triple consensus and anomalous gene trees. BMC Evol Biol (2008) 1.14
Conserved pore-forming regions in polypeptide-transporting proteins. FEBS J (2005) 1.14
A consistent phylogenetic backbone for the fungi. Mol Biol Evol (2011) 1.11
Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects. Mol Biol Evol (2013) 1.10
Distribution and phylogeny of light-oxygen-voltage-blue-light-signaling proteins in the three kingdoms of life. J Bacteriol (2009) 1.09
Maximum-likelihood analysis using TREE-PUZZLE. Curr Protoc Bioinformatics (2007) 1.08
Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs. Genome Res (2012) 1.06
In silico sequence evolution with site-specific interactions along phylogenetic trees. Bioinformatics (2005) 1.05
A phylogenomic approach to resolve the basal pterygote divergence. Mol Biol Evol (2009) 1.05
TonB-dependent transporters and their occurrence in cyanobacteria. BMC Biol (2009) 1.04
Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis. Plant Cell (2010) 1.04
MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment. Mol Biol Evol (2010) 0.97
Phylogenetic diversity within seconds. Syst Biol (2006) 0.97
Taxon Selection under Split Diversity. Syst Biol (2009) 0.96
The evolution of the ribosome biogenesis pathway from a yeast perspective. Nucleic Acids Res (2013) 0.95
Testing substitution models within a phylogenetic tree. Mol Biol Evol (2003) 0.94
State-of the art methodologies dictate new standards for phylogenetic analysis. BMC Evol Biol (2013) 0.92
The tetratricopeptide repeats of receptors involved in protein translocation across membranes. Mol Biol Evol (2007) 0.91
ImOSM: intermittent evolution and robustness of phylogenetic methods. Mol Biol Evol (2011) 0.89
Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis. PLoS One (2012) 0.89
Evolutionarily evolved discriminators in the 3-TPR domain of the Toc64 family involved in protein translocation at the outer membrane of chloroplasts and mitochondria. J Mol Model (2009) 0.89
Identifying site-specific substitution rates. Mol Biol Evol (2003) 0.88
An exact algorithm for the geodesic distance between phylogenetic trees. J Comput Biol (2008) 0.88
Quantitative detection and typing of hepatitis D virus in human serum by real-time polymerase chain reaction and melting curve analysis. Diagn Microbiol Infect Dis (2010) 0.87
FACT: functional annotation transfer between proteins with similar feature architectures. BMC Bioinformatics (2010) 0.87
The impact of single substitutions on multiple sequence alignments. Philos Trans R Soc Lond B Biol Sci (2008) 0.86
Loss of matK RNA editing in seed plant chloroplasts. BMC Evol Biol (2009) 0.84
HvrBase++: a phylogenetic database for primate species. Nucleic Acids Res (2006) 0.83
TreeSnatcher plus: capturing phylogenetic trees from images. BMC Bioinformatics (2012) 0.83
A likelihood framework to measure horizontal gene transfer. Mol Biol Evol (2007) 0.83
On the group theoretical background of assigning stepwise mutations onto phylogenies. Algorithms Mol Biol (2012) 0.83
Exploring the sampling universe of RNA-seq. Stat Appl Genet Mol Biol (2013) 0.81
Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria. Mol Microbiol (2014) 0.81
SNP2GO: functional analysis of genome-wide association studies. Genetics (2014) 0.80
Budgeted phylogenetic diversity on circular split systems. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.77
REvolver: modeling sequence evolution under domain constraints. Mol Biol Evol (2012) 0.76
Random Tree-Puzzle leads to the Yule-Harding distribution. Mol Biol Evol (2010) 0.76
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INVHOGEN: a database of homologous invertebrate genes. Nucleic Acids Res (2006) 0.75
Benefit-of-doubt (BOD) scoring: a sequencing-based method for SNP candidate assessment from high to medium read number data sets. Genomics (2012) 0.75
A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity. BMC Genomics (2014) 0.75
pIPHULA--parallel inference of population parameters using a likelihood approach. Bioinformatics (2007) 0.75
Identification of an ancient haemophilia A splice site mutation. Thromb Res (2012) 0.75