Published in In Silico Biol on January 01, 2005
BioMoby extensions to the Taverna workflow management and enactment software. BMC Bioinformatics (2006) 2.25
Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage. J Bacteriol (2007) 1.46
Seahawk: moving beyond HTML in Web-based bioinformatics analysis. BMC Bioinformatics (2007) 1.23
Life Sciences and the web: a new era for collaboration. Mol Syst Biol (2008) 1.19
Genomorama: genome visualization and analysis. BMC Bioinformatics (2007) 0.99
Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking. BMC Bioinformatics (2008) 0.94
Prepublication data sharing. Nature (2009) 12.24
Transcription profiling of Candida albicans cells undergoing the yeast-to-hyphal transition. Mol Biol Cell (2002) 3.36
Osprey: a comprehensive tool employing novel methods for the design of oligonucleotides for DNA sequencing and microarrays. Nucleic Acids Res (2004) 2.91
The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc Natl Acad Sci U S A (2002) 2.64
Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians. Trends Genet (2005) 2.47
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. Genome Biol (2014) 1.95
Interoperability with Moby 1.0--it's better than sharing your toothbrush! Brief Bioinform (2008) 1.80
Phylogenetic analysis of the ING family of PHD finger proteins. Mol Biol Evol (2004) 1.55
Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage. J Bacteriol (2007) 1.46
Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common. Environ Sci Technol (2013) 1.45
Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest. J Biotechnol (2013) 1.32
Seahawk: moving beyond HTML in Web-based bioinformatics analysis. BMC Bioinformatics (2007) 1.23
Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members. Genome (2013) 1.22
Tracking host sources of Cryptosporidium spp. in raw water for improved health risk assessment. Appl Environ Microbiol (2007) 1.20
First insight into the genome of an uncultivated crenarchaeote from soil. Environ Microbiol (2002) 1.20
Synthetic biosystems for the production of high-value plant metabolites. Trends Biotechnol (2011) 1.19
Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology (2007) 1.18
Carbon and sulfur cycling by microbial communities in a gypsum-treated oil sands tailings pond. Environ Sci Technol (2010) 1.18
Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax by use of genomic and biochemical data. J Bacteriol (2004) 1.17
Micro-computed tomography-based phenotypic approaches in embryology: procedural artifacts on assessments of embryonic craniofacial growth and development. BMC Dev Biol (2010) 1.08
Phylogenetic analysis of the MS4A and TMEM176 gene families. PLoS One (2010) 1.06
Expressed sequence tags from Madagascar periwinkle (Catharanthus roseus). FEBS Lett (2006) 1.05
Gene transcript and metabolite profiling of elicitor-induced opium poppy cell cultures reveals the coordinate regulation of primary and secondary metabolism. Planta (2006) 1.05
CAVEman: Standardized anatomical context for biomedical data mapping. Anat Sci Educ (2008) 1.05
Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface. J Biotechnol (2013) 1.01
Compositions of microbial communities associated with oil and water in a mesothermic oil field. Antonie Van Leeuwenhoek (2011) 0.97
Effect of sodium bisulfite injection on the microbial community composition in a brackish-water-transporting pipeline. Appl Environ Microbiol (2011) 0.96
Age-dependent change in the 3D structure of cortical porosity at the human femoral midshaft. Bone (2007) 0.96
Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259. J Bacteriol (2012) 0.96
Methanotrophic bacteria in oilsands tailings ponds of northern Alberta. ISME J (2012) 0.94
Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking. BMC Bioinformatics (2008) 0.94
Molecular and phylogenetic approaches for assessing sources of Cryptosporidium contamination in water. Water Res (2012) 0.94
Spatiotemporal integration of molecular and anatomical data in virtual reality using semantic mapping. Int J Nanomedicine (2009) 0.93
Transcriptome analysis of Thapsia laciniata Rouy provides insights into terpenoid biosynthesis and diversity in Apiaceae. Int J Mol Sci (2013) 0.92
Microbial community succession in a bioreactor modeling a souring low-temperature oil reservoir subjected to nitrate injection. Appl Microbiol Biotechnol (2011) 0.92
Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons. FEMS Microbiol Ecol (2012) 0.91
Reconstructing the mosaic glycolytic pathway of the anaerobic eukaryote Monocercomonoides. Eukaryot Cell (2006) 0.90
Metabolomic response to exercise training in lean and diet-induced obese mice. J Appl Physiol (1985) (2011) 0.89
Methanogenic toluene metabolism: community structure and intermediates. Environ Microbiol (2011) 0.87
Gene expression by the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions. Appl Environ Microbiol (2008) 0.86
Medical applications: a database and characterization of apps in Apple iOS and Android platforms. BMC Res Notes (2014) 0.85
Interspecies data mining to predict novel ING-protein interactions in human. BMC Genomics (2008) 0.84
Microbial community and potential functional gene diversity involved in anaerobic hydrocarbon degradation and methanogenesis in an oil sands tailings pond. Genome (2013) 0.83
4D bioinformatics: a new look at the ribosome as an example. IUBMB Life (2003) 0.82
Semantic Web Service provision: a realistic framework for Bioinformatics programmers. Bioinformatics (2007) 0.81
SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models. BMC Bioinformatics (2014) 0.81
An efficient virtual dissection tool to create generic models for anatomical atlases. Stud Health Technol Inform (2009) 0.80
Integration of genomic and medical data into a 3D atlas of human anatomy. Stud Health Technol Inform (2008) 0.80
Disease-specific motifs can be identified in circulating nucleic acids from live elk and cattle infected with transmissible spongiform encephalopathies. Nucleic Acids Res (2008) 0.79
Jabiru: harnessing Java 3D behaviors for device and display portability. IEEE Comput Graph Appl (2005) 0.79
Fast interactive integration of cross-sectional image datasets and surface data for morphometric analysis. Stud Health Technol Inform (2009) 0.79
The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1alpha and EF-2. J Eukaryot Microbiol (2002) 0.78
Unconventional microarray design reveals the response to obesity is largely tissue specific: analysis of common and divergent responses to diet-induced obesity in insulin-sensitive tissues. Appl Physiol Nutr Metab (2012) 0.77
On the way to building an integrated computational environment for the study of developmental patterns and genetic diseases. Int J Nanomedicine (2006) 0.77
A novel group of multi-GAP-domain proteins. Mol Reprod Dev (2008) 0.75
Estimating cell count and distribution in labeled histological samples using incremental cell search. Int J Biomed Imaging (2011) 0.75
Building generic anatomical models using virtual model cutting and iterative registration. BMC Med Imaging (2010) 0.75
The Bluejay genome browser. Curr Protoc Bioinformatics (2012) 0.75
Integrative visualization of temporally varying medical image patterns. J Integr Bioinform (2011) 0.75
Generation of connectivity-preserving surface models of multiple sclerosis lesions. Stud Health Technol Inform (2011) 0.75
Genomic compartmentalization of gene families encoding core components of metazoan signaling systems. Genome (2013) 0.75
Visual comparison of multiple gene expression datasets in a genomic context. J Integr Bioinform (2008) 0.75
Creating hierarchical models of protein families based on Expressed Sequence Tags: the "Sprockets" analysis pipeline. Anal Chim Acta (2006) 0.75