Published in PLoS Biol on June 28, 2005
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Stable virulence levels in the HIV epidemic of Switzerland over two decades. AIDS (2006) 1.81
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The HIV coreceptor switch: a population dynamical perspective. Trends Microbiol (2005) 1.76
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Ambiguous nucleotide calls from population-based sequencing of HIV-1 are a marker for viral diversity and the age of infection. Clin Infect Dis (2011) 1.64
Phylogenetic approach reveals that virus genotype largely determines HIV set-point viral load. PLoS Pathog (2010) 1.63
Stochastic or deterministic: what is the effective population size of HIV-1? Trends Microbiol (2006) 1.58
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Long-term trends of HIV type 1 drug resistance prevalence among antiretroviral treatment-experienced patients in Switzerland. Clin Infect Dis (2009) 1.50
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Estimating the stoichiometry of human immunodeficiency virus entry. J Virol (2008) 1.36
Quantification of infectious HIV-1 plasma viral load using a boosted in vitro infection protocol. Virology (2004) 1.32
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The evolution of groups of cooperating bacteria and the growth rate versus yield trade-off. Microbiology (2005) 1.30
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Stochastic interplay between mutation and recombination during the acquisition of drug resistance mutations in human immunodeficiency virus type 1. J Virol (2005) 1.18
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Probing conformational changes in neurotransmitter transporters: a structural context. Eur J Pharmacol (2003) 1.17
Exploring the complexity of the HIV-1 fitness landscape. PLoS Genet (2012) 1.17
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Effect of varying epistasis on the evolution of recombination. Genetics (2006) 1.14
Humoral immunity to HIV-1: kinetics of antibody responses in chronic infection reflects capacity of immune system to improve viral set point. Blood (2004) 1.14
The effect of population structure on the emergence of drug resistance during influenza pandemics. J R Soc Interface (2007) 1.12
Rapid viral decay in simian immunodeficiency virus-infected macaques receiving quadruple antiretroviral therapy. J Virol (2006) 1.10
African descent is associated with slower CD4 cell count decline in treatment-naive patients of the Swiss HIV Cohort Study. AIDS (2009) 1.08
Evolution of taxis responses in virtual bacteria: non-adaptive dynamics. PLoS Comput Biol (2008) 1.06
Assessing predicted HIV-1 replicative capacity in a clinical setting. PLoS Pathog (2011) 1.06
The effect of multifunctionality on the rate of evolution in yeast. Mol Biol Evol (2005) 1.06
Assessing the impact of adherence to anti-retroviral therapy on treatment failure and resistance evolution in HIV. J R Soc Interface (2012) 1.05
Response dynamics of phosphorelays suggest their potential utility in cell signalling. J R Soc Interface (2010) 1.04
Dose-dependent infection rates of parasites produce the Allee effect in epidemiology. Proc Biol Sci (2002) 1.04
The role of migration and domestic transmission in the spread of HIV-1 non-B subtypes in Switzerland. J Infect Dis (2011) 1.03
Red Queen dynamics with non-standard fitness interactions. PLoS Comput Biol (2009) 1.03
Compensation of fitness costs and reversibility of antibiotic resistance mutations. Antimicrob Agents Chemother (2010) 1.01
Residual viral replication during antiretroviral therapy boosts human immunodeficiency virus type 1-specific CD8+ T-cell responses in subjects treated early after infection. J Virol (2002) 0.97
Virus evolution: the importance of being erroneous. Nature (2002) 0.97
Depicting a protein's two faces: GPCR classification by phylogenetic tree-based HMMs. FEBS Lett (2003) 0.97
The evolution of network topology by selective removal. J R Soc Interface (2005) 0.96
Mutation accumulation in space and the maintenance of sexual reproduction. Ecol Lett (2006) 0.96
Evolution of stress response in the face of unreliable environmental signals. PLoS Comput Biol (2012) 0.96
Signal transduction networks: topology, response and biochemical processes. J Theor Biol (2005) 0.95
The role of epistasis on the evolution of recombination in host-parasite coevolution. Theor Popul Biol (2008) 0.94
High epitope expression levels increase competition between T cells. PLoS Comput Biol (2006) 0.93
Spatial models of virus-immune dynamics. J Theor Biol (2004) 0.93
Informed switching strongly decreases the prevalence of antibiotic resistance in hospital wards. PLoS Comput Biol (2011) 0.93
On being the right size: the impact of population size and stochastic effects on the evolution of drug resistance in hospitals and the community. PLoS Pathog (2011) 0.93
Adaptive dynamics with a single two-state protein. J R Soc Interface (2008) 0.93
The role of recombination for the coevolutionary dynamics of HIV and the immune response. PLoS One (2011) 0.92
Viral dynamics and in vivo fitness of HIV-1 in the presence and absence of enfuvirtide. J Acquir Immune Defic Syndr (2008) 0.92
Decelerating decay of latently infected cells during prolonged therapy for human immunodeficiency virus type 1 infection. J Virol (2002) 0.92
The Red Queen and the persistence of linkage-disequilibrium oscillations in finite and infinite populations. BMC Evol Biol (2007) 0.91
Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways. Nucleic Acids Res (2013) 0.90
Modelling cytomegalovirus replication patterns in the human host: factors important for pathogenesis. Proc Biol Sci (2006) 0.90
Recombination and drug resistance in HIV: population dynamics and stochasticity. Epidemics (2008) 0.90
On the causes of selection for recombination underlying the red queen hypothesis. Am Nat (2009) 0.90
Phosphorelays provide tunable signal processing capabilities for the cell. PLoS Comput Biol (2013) 0.90
Bistability in feedback circuits as a byproduct of evolution of evolvability. Mol Syst Biol (2012) 0.89
Guanine-adenine bias: a general property of retroid viruses that is unrelated to host-induced hypermutation. Trends Genet (2005) 0.88
Bacterial growth properties at low optical densities. Antonie Van Leeuwenhoek (2009) 0.87
Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks. PLoS Comput Biol (2013) 0.85
Contribution of peaks of virus load to simian immunodeficiency virus pathogenesis. J Virol (2002) 0.84
Pre-existence and emergence of drug resistance in a generalized model of intra-host viral dynamics. Epidemics (2012) 0.84
Social meets molecular: Combining phylogenetic and latent class analyses to understand HIV-1 transmission in Switzerland. Am J Epidemiol (2014) 0.83
Contribution of recombination to the evolutionary history of HIV. Curr Opin HIV AIDS (2015) 0.82
Parasites lead to evolution of robustness against gene loss in host signaling networks. Mol Syst Biol (2008) 0.82
HIV coreceptor usage and drug treatment. J Theor Biol (2002) 0.82
HIV replication elicits little cytopathic effects in vivo: analysis of surrogate markers for virus production, cytotoxic T cell response and infected cell death. J Med Virol (2006) 0.82
Nested model reveals potential amplification of an HIV epidemic due to drug resistance. Epidemics (2012) 0.82
Plasmids and evolutionary rescue by drug resistance. Evolution (2014) 0.81
Weighting for sex acts to understand the spread of STI on networks. J Theor Biol (2012) 0.81
NMR structure of the second intracellular loop of the alpha 2A adrenergic receptor: evidence for a novel cytoplasmic helix. Biochemistry (2002) 0.81
Estimating the fitness cost of escape from HLA presentation in HIV-1 protease and reverse transcriptase. PLoS Comput Biol (2012) 0.81
Virus-induced target cell activation reconciles set-point viral load heritability and within-host evolution. Epidemics (2013) 0.81
Principal component analysis of general patterns of HIV-1 replicative fitness in different drug environments. Epidemics (2010) 0.81
Epitope down-modulation as a mechanism for the coexistence of competing T-cells. J Theor Biol (2004) 0.80
Evolutionary principles underlying structure and response dynamics of cellular networks. Adv Exp Med Biol (2012) 0.80
Short communication: HIV type 2 dynamics. AIDS Res Hum Retroviruses (2005) 0.80
Fixation probability of mobile genetic elements such as plasmids. Theor Popul Biol (2013) 0.79
Can high-risk fungicides be used in mixtures without selecting for fungicide resistance? Phytopathology (2014) 0.78
Predicting the evolution of sex on complex fitness landscapes. PLoS Comput Biol (2009) 0.78
On the evolution of sexual reproduction in hosts coevolving with multiple parasites. Evolution (2010) 0.77