Published in Mol Cell on July 22, 2005
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Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res (2006) 2.63
Brd4 links chromatin targeting to HPV transcriptional silencing. Genes Dev (2006) 2.36
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The mRNA export factor Sus1 is involved in Spt/Ada/Gcn5 acetyltransferase-mediated H2B deubiquitinylation through its interaction with Ubp8 and Sgf11. Mol Biol Cell (2006) 1.83
DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter. Hum Mol Genet (2011) 1.83
Determinants of histone H1 mobility and chromatin binding in living cells. Nat Struct Mol Biol (2006) 1.64
DNA physical properties determine nucleosome occupancy from yeast to fly. Nucleic Acids Res (2008) 1.62
Histone H2A.Z is essential for estrogen receptor signaling. Genes Dev (2009) 1.58
Genetic and epigenetic mechanisms of gene regulation during lens development. Prog Retin Eye Res (2007) 1.56
Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity. Proc Natl Acad Sci U S A (2007) 1.55
Dynamic and transient remodeling of the macrophage IL-10 promoter during transcription. J Immunol (2006) 1.55
OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes. Proc Natl Acad Sci U S A (2011) 1.51
Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting. PLoS Genet (2006) 1.48
Epigenetic mechanisms in the development of type 2 diabetes. Trends Endocrinol Metab (2009) 1.46
Interleukin 2 gene transcription is regulated by Ikaros-induced changes in histone acetylation in anergic T cells. Blood (2007) 1.43
Epigenetic aberrations and cancer. Mol Cancer (2006) 1.29
Tsix-mediated epigenetic switch of a CTCF-flanked region of the Xist promoter determines the Xist transcription program. Genes Dev (2006) 1.29
Epigenetics and phenotypic variation in mammals. Mamm Genome (2006) 1.26
Locking the genome: nuclear organization and cell fate. Curr Opin Genet Dev (2011) 1.22
A distant upstream locus control region is critical for expression of the Kit receptor gene in mast cells. Mol Cell Biol (2006) 1.20
Activation of Saccharomyces cerevisiae HIS3 results in Gcn4p-dependent, SWI/SNF-dependent mobilization of nucleosomes over the entire gene. Mol Cell Biol (2006) 1.20
Rapid accessibility of nucleosomal DNA in yeast on a second time scale. EMBO J (2006) 1.20
Antagonistic regulation of beta-globin gene expression by helix-loop-helix proteins USF and TFII-I. Mol Cell Biol (2006) 1.18
Tissue- and expression level-specific chromatin looping at maize b1 epialleles. Plant Cell (2009) 1.14
Epigenetic responses to environmental change and their evolutionary implications. Philos Trans R Soc Lond B Biol Sci (2009) 1.14
The forkhead factor FoxE1 binds to the thyroperoxidase promoter during thyroid cell differentiation and modifies compacted chromatin structure. Mol Cell Biol (2007) 1.12
H3K27 demethylation by JMJD3 at a poised enhancer of anti-apoptotic gene BCL2 determines ERα ligand dependency. EMBO J (2011) 1.12
The histone methyltransferase MMSET/WHSC1 activates TWIST1 to promote an epithelial-mesenchymal transition and invasive properties of prostate cancer. Oncogene (2012) 1.07
Stepwise histone modifications are mediated by multiple enzymes that rapidly associate with nascent DNA during replication. Nat Commun (2013) 1.01
Epigenetic mechanisms of age-dependent KIR2DL4 expression in T cells. J Leukoc Biol (2008) 1.00
Chromatin structure and gene regulation in T cell development and function. Curr Opin Immunol (2006) 0.99
Acetylation of EKLF is essential for epigenetic modification and transcriptional activation of the beta-globin locus. Mol Cell Biol (2008) 0.95
G-actin participates in RNA polymerase II-dependent transcription elongation by recruiting positive transcription elongation factor b (P-TEFb). J Biol Chem (2011) 0.92
GATA-1 modulates the chromatin structure and activity of the chicken alpha-globin 3' enhancer. Mol Cell Biol (2007) 0.89
An emerging role for bromodomain-containing proteins in chromatin regulation and transcriptional control of adipogenesis. FEBS Lett (2010) 0.89
Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters. Nucleic Acids Res (2009) 0.88
Sp1-dependent activation of HDAC7 is required for platelet-derived growth factor-BB-induced smooth muscle cell differentiation from stem cells. J Biol Chem (2010) 0.86
A Common histone modification code on C4 genes in maize and its conservation in Sorghum and Setaria italica. Plant Physiol (2013) 0.86
Histone H3 lysine 14 (H3K14) acetylation facilitates DNA repair in a positioned nucleosome by stabilizing the binding of the chromatin Remodeler RSC (Remodels Structure of Chromatin). J Biol Chem (2014) 0.85
Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II. Nucleic Acids Res (2008) 0.85
Four Promoters of IRF5 Respond Distinctly to Stimuli and are Affected by Autoimmune-Risk Polymorphisms. Front Immunol (2013) 0.85
Identification of distinct SET/TAF-Ibeta domains required for core histone binding and quantitative characterisation of the interaction. BMC Biochem (2009) 0.84
The chromatin remodeling and mRNA splicing functions of the Brahma (SWI/SNF) complex are mediated by the SNR1/SNF5 regulatory subunit. Nucleic Acids Res (2012) 0.84
Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information. BMC Genomics (2011) 0.82
The genetics of neuroendocrine prostate cancers: a review of current and emerging candidates. Appl Clin Genet (2012) 0.82
Single molecule analysis of DNA wrapping and looping by a circular 14mer wheel of the bacteriophage 186 CI repressor. Nucleic Acids Res (2013) 0.81
Retracted Switching of chromatin-remodelling complexes for oestrogen receptor-alpha. EMBO Rep (2008) 0.81
Coordinated histone H3 methylation and acetylation regulate physiologic and pathologic fas ligand gene expression in human CD4+ T cells. J Immunol (2014) 0.80
SET domains of histone methyltransferases recognize ISWI-remodeled nucleosomal species. Mol Cell Biol (2009) 0.80
Intrauterine Growth Retardation - A Developmental Model of Type 2 Diabetes. Drug Discov Today Dis Models (2013) 0.80
Understanding the genetic liability to schizophrenia through the neuroepigenome. Schizophr Res (2016) 0.79
Identifying putative promoter regions of Hermansky-Pudlak syndrome genes by means of phylogenetic footprinting. Ann Hum Genet (2009) 0.78
Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism. PLoS Comput Biol (2015) 0.78
Transcriptional interaction-assisted identification of dynamic nucleosome positioning. BMC Bioinformatics (2009) 0.78
Differentiation-specific action of orphan nuclear receptor NR5A1 (SF-1): transcriptional regulation in luteinizing bovine theca cells. Reprod Biol Endocrinol (2006) 0.76
Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications. BMC Genomics (2009) 0.76
Recent computational approaches to understand gene regulation: mining gene regulation in silico. Curr Genomics (2007) 0.76
Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence. BMC Genomics (2009) 0.76
Re-establishment of nucleosome occupancy during double-strand break repair in budding yeast. DNA Repair (Amst) (2016) 0.75
Systems biology meets chromatin function. Workshop on Nuclear Organization. EMBO Rep (2007) 0.75