Published in New Phytol on September 01, 2005
Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol (2006) 2.01
Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean. BMC Plant Biol (2010) 1.31
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Low oxygen sensing and balancing in plant seeds: a role for nitric oxide. New Phytol (2007) 0.96
Targeted enhancement of glutamate-to-γ-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner. Plant Physiol (2011) 0.96
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Lipid and protein accumulation in developing seeds of three lupine species: Lupinus luteus L., Lupinus albus L., and Lupinus mutabilis Sweet. J Exp Bot (2009) 0.78
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The Systems Biology Graphical Notation. Nat Biotechnol (2009) 8.53
VANTED: a system for advanced data analysis and visualization in the context of biological networks. BMC Bioinformatics (2006) 4.38
Molecular physiology of legume seed development. Annu Rev Plant Biol (2005) 2.46
HTPheno: an image analysis pipeline for high-throughput plant phenotyping. BMC Bioinformatics (2011) 1.98
Exploration of biological network centralities with CentiBiN. BMC Bioinformatics (2006) 1.78
Dynamic exploration and editing of KEGG pathway diagrams. Bioinformatics (2006) 1.75
Legume embryos develop in a hypoxic environment. J Exp Bot (2002) 1.75
Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiol (2008) 1.73
Editing, validating and translating of SBGN maps. Bioinformatics (2010) 1.71
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinformatics (2012) 1.69
MetaCrop: a detailed database of crop plant metabolism. Nucleic Acids Res (2007) 1.53
Apomictic and sexual ovules of Boechera display heterochronic global gene expression patterns. Plant Cell (2010) 1.52
Void space inside the developing seed of Brassica napus and the modelling of its function. New Phytol (2013) 1.52
Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA- regulated maturation in developing barley seeds. Plant J (2006) 1.51
VANTED v2: a framework for systems biology applications. BMC Syst Biol (2012) 1.49
Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiol (2008) 1.43
Large-scale analysis of the barley transcriptome based on expressed sequence tags. Plant J (2004) 1.41
Seed-development programs: a systems biology-based comparison between dicots and monocots. Annu Rev Plant Biol (2013) 1.35
Energy state and its control on seed development: starch accumulation is associated with high ATP and steep oxygen gradients within barley grains. J Exp Bot (2004) 1.32
Path2Models: large-scale generation of computational models from biochemical pathway maps. BMC Syst Biol (2013) 1.29
Transcript profiles and deduced changes of metabolic pathways in maternal and filial tissues of developing barley grains. Plant J (2004) 1.29
Spatial mapping of lipids at cellular resolution in embryos of cotton. Plant Cell (2012) 1.24
Energy status and its control on embryogenesis of legumes. Embryo photosynthesis contributes to oxygen supply and is coupled to biosynthetic fluxes. Plant Physiol (2003) 1.22
Different hormonal regulation of cellular differentiation and function in nucellar projection and endosperm transfer cells: a microdissection-based transcriptome study of young barley grains. Plant Physiol (2008) 1.22
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Gradients of seed photosynthesis and its role for oxygen balancing. Biosystems (2010) 1.20
The role of invertases and hexose transporters in controlling sugar ratios in maternal and filial tissues of barley caryopses during early development. Plant J (2003) 1.19
Centrality analysis methods for biological networks and their application to gene regulatory networks. Gene Regul Syst Bio (2008) 1.17
Repressing the expression of the SUCROSE NONFERMENTING-1-RELATED PROTEIN KINASE gene in pea embryo causes pleiotropic defects of maturation similar to an abscisic acid-insensitive phenotype. Plant Physiol (2005) 1.17
Quantitative imaging of oil storage in developing crop seeds. Plant Biotechnol J (2007) 1.17
Spatiotemporal profiling of starch biosynthesis and degradation in the developing barley grain. Plant Physiol (2009) 1.16
ABA biosynthesis and degradation contributing to ABA homeostasis during barley seed development under control and terminal drought-stress conditions. J Exp Bot (2011) 1.14
Gradients of lipid storage, photosynthesis and plastid differentiation in developing soybean seeds. New Phytol (2005) 1.13
Integration of -omics data and networks for biomedical research with VANTED. J Integr Bioinform (2010) 1.12
Positional cues for the starch/lipid balance in maize kernels and resource partitioning to the embryo. Plant J (2005) 1.11
Dynamic ¹³C/¹ H NMR imaging uncovers sugar allocation in the living seed. Plant Biotechnol J (2011) 1.10
Combined noninvasive imaging and modeling approaches reveal metabolic compartmentation in the barley endosperm. Plant Cell (2011) 1.06
Spatial analysis of plant metabolism: sucrose imaging within Vicia faba cotyledons reveals specific developmental patterns. Plant J (2002) 1.06
Nitrite-nitric oxide control of mitochondrial respiration at the frontier of anoxia. Biochim Biophys Acta (2008) 1.06
Antisense-inhibition of ADP-glucose pyrophosphorylase in Vicia narbonensis seeds increases soluble sugars and leads to higher water and nitrogen uptake. Planta (2002) 1.04
Ectopic expression of an amino acid transporter (VfAAP1) in seeds of Vicia narbonensis and pea increases storage proteins. Plant Physiol (2005) 1.04
Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale. Plant Physiol (2013) 1.04
Barley grain development toward an integrative view. Int Rev Cell Mol Biol (2010) 1.04
Transcriptome changes in foxtail millet genotypes at high salinity: identification and characterization of a PHGPX gene specifically upregulated by NaCl in a salt-tolerant line. J Plant Physiol (2004) 1.03
MODA: an efficient algorithm for network motif discovery in biological networks. Genes Genet Syst (2009) 1.03
Development of maternal seed tissue in barley is mediated by regulated cell expansion and cell disintegration and coordinated with endosperm growth. J Exp Bot (2010) 1.03
Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism. Plant J (2008) 1.02
The metabolic role of the legume endosperm: a noninvasive imaging study. Plant Physiol (2009) 1.02
Seed-specific expression of a bacterial phosphoenolpyruvate carboxylase in Vicia narbonensis increases protein content and improves carbon economy. Plant Biotechnol J (2004) 1.01
Jekyll encodes a novel protein involved in the sexual reproduction of barley. Plant Cell (2006) 0.99
An engineer's view on regulation of seed development. Trends Plant Sci (2010) 0.99
Temperature-dependent endogenous oxygen concentration regulates microsomal oleate desaturase in developing sunflower seeds. J Exp Bot (2007) 0.98
Low oxygen sensing and balancing in plant seeds: a role for nitric oxide. New Phytol (2007) 0.96
Energy status and its control on embryogenesis of legumes: ATP distribution within Vicia faba embryos is developmentally regulated and correlated with photosynthetic capacity. Plant J (2003) 0.96
Analysis of barley (Hordeum vulgare) grain development using three-dimensional digital models. Plant J (2007) 0.96
Modularization of biochemical networks based on classification of Petri net t-invariants. BMC Bioinformatics (2008) 0.96
A pea seed mutant affected in the differentiation of the embryonic epidermis is impaired in embryo growth and seed maturation. Development (2002) 0.95
FBA-SimVis: interactive visualization of constraint-based metabolic models. Bioinformatics (2009) 0.95
The differential transcription network between embryo and endosperm in the early developing maize seed. Plant Physiol (2013) 0.95
Creating interactive, web-based and data-enriched maps with the Systems Biology Graphical Notation. Nat Protoc (2012) 0.95
Meta-All: a system for managing metabolic pathway information. BMC Bioinformatics (2006) 0.94
Integrating data from biological experiments into metabolic networks with the DBE information system. In Silico Biol (2005) 0.93
Peptide and amino acid transporters are differentially regulated during seed development and germination in faba bean. Plant Physiol (2003) 0.92
The methylation cycle and its possible functions in barley endosperm development. Plant Mol Biol (2005) 0.91
Controllability in cancer metabolic networks according to drug targets as driver nodes. PLoS One (2013) 0.91
Array platforms and bioinformatics tools for the analysis of plant transcriptome in response to abiotic stress. Methods Mol Biol (2010) 0.91
Antisense inhibition of the plastidial glucose-6-phosphate/phosphate translocator in Vicia seeds shifts cellular differentiation and promotes protein storage. Plant J (2007) 0.90
OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. BMC Plant Biol (2012) 0.90
Ranking of network elements based on functional substructures. J Theor Biol (2007) 0.90
Bioinformatics strategies for the analysis of lipids. Methods Mol Biol (2009) 0.90
Visualisation and navigation methods for typed protein-protein interaction networks. Appl Bioinformatics (2003) 0.88