Published in Proteins on January 01, 2005
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection. Nucleic Acids Res (2006) 1.96
MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information. Nucleic Acids Res (2006) 1.85
A multi-template combination algorithm for protein comparative modeling. BMC Struct Biol (2008) 1.62
Improved scoring function for comparative modeling using the M4T method. J Struct Funct Genomics (2008) 1.19
MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction. Proteins (2011) 1.01
Structure prediction of domain insertion proteins from structures of individual domains. Structure (2008) 1.01
Template-based protein structure modeling using TASSER(VMT.). Proteins (2011) 0.98
Systematic analysis of the effect of multiple templates on the accuracy of comparative models of protein structure. BMC Struct Biol (2008) 0.98
GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions. BMC Bioinformatics (2012) 0.92
Distinct double- and single-stranded DNA binding of E. coli replicative DNA polymerase III alpha subunit. ACS Chem Biol (2008) 0.90
Template-based protein structure modeling. Methods Mol Biol (2010) 0.86
Early evolution of ionotropic GABA receptors and selective regimes acting on the mammalian-specific theta and epsilon subunits. PLoS One (2007) 0.83
Characterization of mutant serine palmitoyltransferase 1 in LY-B cells. Lipids (2009) 0.81
Relative packing groups in template-based structure prediction: cooperative effects of true positive constraints. J Comput Biol (2011) 0.79
Molecular modeling of human alkaline sphingomyelinase. Bioinformation (2011) 0.78
A Stochastic Point Cloud Sampling Method for Multi-Template Protein Comparative Modeling. Sci Rep (2016) 0.77
Proton channel models filling the gap between experimental data and the structural rationale. Channels (Austin) (2014) 0.77
Using phylogeny to improve genome-wide distant homology recognition. PLoS Comput Biol (2006) 0.76
patGPCR: a multitemplate approach for improving 3D structure prediction of transmembrane helices of G-protein-coupled receptors. Comput Math Methods Med (2013) 0.75
Structure of the 40S ribosomal subunit of Plasmodium falciparum by homology and de novo modeling. Acta Pharm Sin B (2016) 0.75
NEW MDS AND CLUSTERING BASED ALGORITHMS FOR PROTEIN MODEL QUALITY ASSESSMENT AND SELECTION. Int J Artif Intell Tools (2013) 0.75
Including Functional Annotations and Extending the Collection of Structural Classifications of Protein Loops (ArchDB). Bioinform Biol Insights (2009) 0.75
A robust all-atom model for LCAT generated by homology modeling. J Lipid Res (2015) 0.75
Ligand recognition by the TPR domain of the import factor Toc64 from Arabidopsis thaliana. PLoS One (2013) 0.75
The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins. Proteins (2009) 1.00
Identification of new homologs of PD-(D/E)XK nucleases by support vector machines trained on data derived from profile-profile alignments. Nucleic Acids Res (2010) 0.90
Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure. Bioinformatics (2010) 0.84
Re-searcher: a system for recurrent detection of homologous protein sequences. BMC Bioinformatics (2008) 0.79