Published in Bioinformatics on November 17, 2005
Slc39a14 gene encodes ZIP14, a metal/bicarbonate symporter: similarities to the ZIP8 transporter. Mol Pharmacol (2008) 1.69
An unusual ERAD-like complex is targeted to the apicoplast of Plasmodium falciparum. Eukaryot Cell (2009) 1.31
Membrane protein prediction methods. Methods (2007) 1.17
Transmembrane helix prediction using amino acid property features and latent semantic analysis. BMC Bioinformatics (2008) 1.15
Structure-function analysis of MurJ reveals a solvent-exposed cavity containing residues essential for peptidoglycan biogenesis in Escherichia coli. J Bacteriol (2013) 0.98
Mitochondria-specific transgenic overexpression of connexin-43 simulates preconditioning-induced cytoprotection of stem cells. Cardiovasc Res (2010) 0.98
Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions. BMC Genomics (2007) 0.87
Subcellular localization of extracytoplasmic proteins in monoderm bacteria: rational secretomics-based strategy for genomic and proteomic analyses. PLoS One (2012) 0.87
Domain analysis of lipoprotein LppQ in Mycoplasma mycoides subsp. mycoides SC. Antonie Van Leeuwenhoek (2007) 0.86
Prediction of the burial status of transmembrane residues of helical membrane proteins. BMC Bioinformatics (2007) 0.86
Bilayer mechanical properties regulate the transmembrane helix mobility and enzymatic state of CD39. Biochemistry (2007) 0.85
Genome-wide identification, evolution and expression analysis of mTERF gene family in maize. PLoS One (2014) 0.84
A comprehensive phylogenetic and structural analysis of the carcinoembryonic antigen (CEA) gene family. Genome Biol Evol (2014) 0.83
The Peptidoglycan-Binding Protein SjcF1 Influences Septal Junction Function and Channel Formation in the Filamentous Cyanobacterium Anabaena. MBio (2015) 0.80
Functional characterization and localization of Pneumocystis carinii lanosterol synthase. Eukaryot Cell (2009) 0.79
Topology of the yeast Ras converting enzyme as inferred from cysteine accessibility studies. Biochemistry (2013) 0.79
VMP1-deficient Chlamydomonas exhibits severely aberrant cell morphology and disrupted cytokinesis. BMC Plant Biol (2014) 0.78
In silico characterization and homology modeling of thylakoid-bound ascorbate peroxidase from a drought tolerant wheat cultivar. Genomics Proteomics Bioinformatics (2009) 0.77
MutaCYP: Classification of missense mutations in human cytochromes P450. BMC Med Genomics (2014) 0.75
GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease. BMC Bioinformatics (2016) 0.75
Functional Characterization of Pneumocystis carinii Inositol Transporter 1. MBio (2016) 0.75
In silico analysis and modeling of ACP-MIP-PilQ chimeric antigen from Neisseria meningitidis serogroup B. Rep Biochem Mol Biol (2015) 0.75
dEMBF: A Comprehensive Database of Enzymes of Microalgal Biofuel Feedstock. PLoS One (2016) 0.75
Structural Basis for EarP-Mediated Arginine Glycosylation of Translation Elongation Factor EF-P. MBio (2017) 0.75
Predictive Structure and Topology of Peroxisomal ATP-Binding Cassette (ABC) Transporters. Int J Mol Sci (2017) 0.75
p62 is a key regulator of nutrient sensing in the mTORC1 pathway. Mol Cell (2011) 3.46
Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms. BMC Bioinformatics (2007) 3.03
Mutations within the P2 domain of norovirus capsid affect binding to human histo-blood group antigens: evidence for a binding pocket. J Virol (2003) 2.82
Accurate prediction of solvent accessibility using neural networks-based regression. Proteins (2004) 2.54
Combining prediction of secondary structure and solvent accessibility in proteins. Proteins (2005) 2.24
von Hippel-Lindau protein binds hyperphosphorylated large subunit of RNA polymerase II through a proline hydroxylation motif and targets it for ubiquitination. Proc Natl Acad Sci U S A (2003) 1.78
Granulocyte macrophage-colony stimulating factor induced Zn sequestration enhances macrophage superoxide and limits intracellular pathogen survival. Immunity (2013) 1.77
POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins. Bioinformatics (2004) 1.61
Control of nutrient stress-induced metabolic reprogramming by PKCζ in tumorigenesis. Cell (2013) 1.44
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D. BMC Bioinformatics (2007) 1.44
Linear regression models for solvent accessibility prediction in proteins. J Comput Biol (2005) 1.42
Transcriptome of Pneumocystis carinii during fulminate infection: carbohydrate metabolism and the concept of a compatible parasite. PLoS One (2007) 1.20
Sensitivity analysis for reversal distance and breakpoint reuse in genome rearrangements. Pac Symp Biocomput (2008) 1.12
von Hippel-Lindau tumor suppressor: not only HIF's executioner. Trends Mol Med (2004) 1.12
A central domain of cyclin D1 mediates nuclear receptor corepressor activity. Oncogene (2005) 1.12
Deuterium isotope effects on hydrophobic interactions: the importance of dispersion interactions in the hydrophobic phase. J Am Chem Soc (2003) 1.06
Effects of parabens on adipocyte differentiation. Toxicol Sci (2012) 0.99
Draft assembly and annotation of the Pneumocystis carinii genome. J Eukaryot Microbiol (2006) 0.99
An XRCC4 splice mutation associated with severe short stature, gonadal failure, and early-onset metabolic syndrome. J Clin Endocrinol Metab (2015) 0.99
Mitochondria-specific transgenic overexpression of connexin-43 simulates preconditioning-induced cytoprotection of stem cells. Cardiovasc Res (2010) 0.98
Survey of public domain software for docking simulations and virtual screening. Hum Genomics (2011) 0.95
Tumor-suppressing function of caspase-2 requires catalytic site Cys-320 and site Ser-139 in mice. J Biol Chem (2012) 0.93
Building and assessing atomic models of proteins from structural templates: learning and benchmarks. Proteins (2009) 0.92
CYP63A2, a catalytically versatile fungal P450 monooxygenase capable of oxidizing higher-molecular-weight polycyclic aromatic hydrocarbons, alkylphenols, and alkanes. Appl Environ Microbiol (2013) 0.92
Expression profiles during dedifferentiation in newt lens regeneration revealed by expressed sequence tags. Mol Vis (2010) 0.89
A fungal P450 (CYP5136A3) capable of oxidizing polycyclic aromatic hydrocarbons and endocrine disrupting alkylphenols: role of Trp(129) and Leu(324). PLoS One (2011) 0.88
Analysis of current antifungal agents and their targets within the Pneumocystis carinii genome. Curr Drug Targets (2012) 0.87
POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations. Nucleic Acids Res (2010) 0.85
Interleukin-6 receptor enhances early colonization of the murine omentum by upregulation of a mannose family receptor, LY75, in ovarian tumor cells. Clin Exp Metastasis (2011) 0.83
Fast geometric consensus approach for protein model quality assessment. J Comput Biol (2011) 0.83
Genomics Portals: integrative web-platform for mining genomics data. BMC Genomics (2010) 0.82
Comment on "X-ray absorption spectra reveal the inapplicability of the single-band hubbard model to overdoped cuprate superconductors". Phys Rev Lett (2010) 0.79
Accelerating the Pace of Protein Functional Annotation With Intel Xeon Phi Coprocessors. IEEE Trans Nanobioscience (2015) 0.78
Enhanced prediction of conformational flexibility and phosphorylation in proteins. Adv Exp Med Biol (2010) 0.77
On setting up and assessing docking simulations for virtual screening. Methods Mol Biol (2012) 0.77
Rational engineering of the fungal P450 monooxygenase CYP5136A3 to improve its oxidizing activity toward polycyclic aromatic hydrocarbons. Protein Eng Des Sel (2013) 0.76
Large-scale characterization of introns in the Pneumocystis carinii genome. J Eukaryot Microbiol (2006) 0.76
Genetic risk signatures of opioid-induced respiratory depression following pediatric tonsillectomy. Pharmacogenomics (2014) 0.75
Continuous-time quantum Monte Carlo and maximum entropy approach to an imaginary-time formulation of strongly correlated steady-state transport. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.75
Nonlocal effects on magnetism in the diluted magnetic semiconductor Ga1-xMnxAs. Phys Rev Lett (2010) 0.75
Analytic continuation of quantum Monte Carlo data by stochastic analytical inference. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.75
The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine. Biochemistry (2017) 0.75
Effective cluster typical medium theory for the diagonal Anderson disorder model in one- and two-dimensions. J Phys Condens Matter (2014) 0.75
First-principles Wannier function analysis of the electronic structure of PdTe: weaker magnetism and superconductivity. J Phys Condens Matter (2013) 0.75
Transition temperature of a magnetic semiconductor with angular momentum j. Phys Rev Lett (2006) 0.75