PubRank

Robert Giegerich

Author PubWeight™ 91.42‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 GenDB--an open source genome annotation system for prokaryote genomes. Nucleic Acids Res 2003 18.88
2 Fast and effective prediction of microRNA/target duplexes. RNA 2004 18.10
3 RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics 2005 3.20
4 A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics 2004 3.20
5 Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinformatics 2004 2.73
6 Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 2006 2.66
7 PathFinder: reconstruction and dynamic visualization of metabolic pathways. Bioinformatics 2002 2.43
8 Local similarity in RNA secondary structures. Proc IEEE Comput Soc Bioinform Conf 2003 2.33
9 Efficient computation of absent words in genomic sequences. BMC Bioinformatics 2008 1.91
10 GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics 2004 1.85
11 Pure multiple RNA secondary structure alignments: a progressive profile approach. IEEE/ACM Trans Comput Biol Bioinform 2006 1.79
12 Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. Bioinformatics 2005 1.74
13 pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. Nucleic Acids Res 2007 1.74
14 GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinformatics 2008 1.43
15 XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinformatics 2006 1.33
16 Evaluating the predictability of conformational switching in RNA. Bioinformatics 2004 1.30
17 Complete probabilistic analysis of RNA shapes. BMC Biol 2006 1.27
18 A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti. BMC Genomics 2010 1.24
19 Beyond Mfold: recent advances in RNA bioinformatics. J Biotechnol 2006 1.23
20 Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021. BMC Genomics 2013 1.21
21 Locomotif: from graphical motif description to RNA motif search. Bioinformatics 2007 1.10
22 Effective ambiguity checking in biosequence analysis. BMC Bioinformatics 2005 1.06
23 Conveyor: a workflow engine for bioinformatic analyses. Bioinformatics 2011 1.04
24 KnotInFrame: prediction of -1 ribosomal frameshift events. Nucleic Acids Res 2008 1.02
25 Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinformatics 2011 1.01
26 RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Res 2003 1.00
27 e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. Nucleic Acids Res 2004 0.99
28 Versatile and declarative dynamic programming using pair algebras. BMC Bioinformatics 2005 0.97
29 Shape based indexing for faster search of RNA family databases. BMC Bioinformatics 2008 0.96
30 mkESA: enhanced suffix array construction tool. Bioinformatics 2009 0.94
31 Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. BMC Bioinformatics 2012 0.93
32 GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. Bioinformatics 2006 0.93
33 Bellman's GAP--a language and compiler for dynamic programming in sequence analysis. Bioinformatics 2013 0.91
34 Alignment of minisatellite maps based on run-length encoding scheme. J Bioinform Comput Biol 2009 0.91
35 Faster computation of exact RNA shape probabilities. Bioinformatics 2010 0.88
36 Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics 2009 0.86
37 RNA secondary structure analysis using the RNAshapes package. Curr Protoc Bioinformatics 2009 0.86
38 Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server. Brief Bioinform 2008 0.82
39 Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinformatics 2010 0.81
40 XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis. BMC Genomics 2005 0.81
41 Thermodynamic matchers for the construction of the cuckoo RNA family. RNA Biol 2015 0.79
42 Abstract shape analysis of RNA. Methods Mol Biol 2014 0.78
43 WAMI: a web server for the analysis of minisatellite maps. BMC Evol Biol 2010 0.77
44 A silent exonic SNP in kdm3a affects nucleic acids structure but does not regulate experimental autoimmune encephalomyelitis. PLoS One 2013 0.77
45 Introduction to RNA secondary structure comparison. Methods Mol Biol 2014 0.76
46 Surprises in approximating Levenshtein distances. J Theor Biol 2006 0.75
47 The BRaliBase dent-a tale of benchmark design and interpretation. Brief Bioinform 2017 0.75