Published in Bioinformatics on January 05, 2006
Structural proteomics of minimal organisms: conservation of protein fold usage and evolutionary implications. BMC Struct Biol (2006) 0.83
WebLogo: a sequence logo generator. Genome Res (2004) 59.58
The Bioperl toolkit: Perl modules for the life sciences. Genome Res (2002) 58.63
SCOP database in 2002: refinements accommodate structural genomics. Nucleic Acids Res (2002) 18.11
SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res (2004) 15.21
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol (2007) 13.99
Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res (2007) 13.44
Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (2010) 12.39
The developmental transcriptome of Drosophila melanogaster. Nature (2010) 11.85
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc Natl Acad Sci U S A (2002) 10.28
The ASTRAL Compendium in 2004. Nucleic Acids Res (2004) 10.03
Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res (2010) 9.08
Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature (2007) 7.12
The impact of structural genomics: expectations and outcomes. Science (2006) 5.30
A large-scale evaluation of computational protein function prediction. Nat Methods (2013) 4.61
ASTRAL compendium enhancements. Nucleic Acids Res (2002) 4.43
The RNA Ontology Consortium: an open invitation to the RNA community. RNA (2006) 3.60
Protein molecular function prediction by Bayesian phylogenomics. PLoS Comput Biol (2005) 3.14
The evolving roles of alternative splicing. Curr Opin Struct Biol (2004) 2.99
SCOR: a Structural Classification of RNA database. Nucleic Acids Res (2002) 2.79
Conservation of an RNA regulatory map between Drosophila and mammals. Genome Res (2010) 2.43
An unappreciated role for RNA surveillance. Genome Biol (2004) 2.28
Planning the human variome project: the Spain report. Hum Mutat (2009) 2.22
SCOPe: Structural Classification of Proteins--extended, integrating SCOP and ASTRAL data and classification of new structures. Nucleic Acids Res (2013) 2.22
Outcome of a workshop on applications of protein models in biomedical research. Structure (2009) 2.05
Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila. Genes Dev (2005) 2.03
SCOR: Structural Classification of RNA, version 2.0. Nucleic Acids Res (2004) 2.02
RNA structural motifs: building blocks of a modular biomolecule. Q Rev Biophys (2006) 1.88
Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences. ISME J (2012) 1.86
Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes. Bioinformatics (2003) 1.84
Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap. Bioinformatics (2005) 1.77
The coupling of alternative splicing and nonsense-mediated mRNA decay. Adv Exp Med Biol (2007) 1.77
Sulfotransferases and sulfatases in mycobacteria. Chem Biol (2002) 1.74
Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches. Proteins (2005) 1.71
Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. Mol Cell (2009) 1.52
Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. PLoS Genet (2009) 1.46
Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns. Nucleic Acids Res (2004) 1.43
MeRNA: a database of metal ion binding sites in RNA structures. Nucleic Acids Res (2006) 1.24
The COMBREX project: design, methodology, and initial results. PLoS Biol (2013) 1.24
Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs. Mol Cell (2004) 1.21
Automated multi-model reconstruction from single-particle electron microscopy data. J Struct Biol (2010) 1.18
Structural genomics of minimal organisms and protein fold space. J Struct Funct Genomics (2005) 1.16
A method for the alignment of heterogeneous macromolecules from electron microscopy. J Struct Biol (2008) 1.16
Genome-scale phylogenetic function annotation of large and diverse protein families. Genome Res (2011) 1.10
An alternative model of amino acid replacement. Bioinformatics (2004) 1.10
A generalized affine gap model significantly improves protein sequence alignment accuracy. Proteins (2005) 1.09
Newborn screening for SCID identifies patients with ataxia telangiectasia. J Clin Immunol (2012) 1.05
Protein secondary structure: entropy, correlations and prediction. Bioinformatics (2004) 1.04
Target selection and deselection at the Berkeley Structural Genomics Center. Proteins (2006) 0.98
Comparative mapping of sequence-based and structure-based protein domains. BMC Bioinformatics (2005) 0.97
Structural studies of the Nudix hydrolase DR1025 from Deinococcus radiodurans and its ligand complexes. J Mol Biol (2004) 0.93
Measurements of protein sequence-structure correlations. Proteins (2004) 0.90
Pairwise alignment incorporating dipeptide covariation. Bioinformatics (2005) 0.89
Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center. J Struct Funct Genomics (2007) 0.88
Survey of large protein complexes in D. vulgaris reveals great structural diversity. Proc Natl Acad Sci U S A (2009) 0.86
Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough. PLoS One (2011) 0.85
Association of gut microbiota with post-operative clinical course in Crohn's disease. BMC Gastroenterol (2013) 0.83
Nijmegen breakage syndrome detected by newborn screening for T cell receptor excision circles (TRECs). J Clin Immunol (2015) 0.82
WIST: toolkit for rapid, customized LIMS development. Bioinformatics (2011) 0.82
Combined immunodeficiency due to MALT1 mutations, treated by hematopoietic cell transplantation. J Clin Immunol (2015) 0.82
Personalized medicine: from genotypes, molecular phenotypes and the quantified self, towards improved medicine. Pac Symp Biocomput (2015) 0.82
Phylogenetic molecular function annotation. J Phys Conf Ser (2009) 0.81
High-throughput isolation and characterization of untagged membrane protein complexes: outer membrane complexes of Desulfovibrio vulgaris. J Proteome Res (2012) 0.80
An SF1 affinity model to identify branch point sequences in human introns. Nucleic Acids Res (2010) 0.79
NMR structure of the N-terminal domain of the replication initiator protein DnaA. J Struct Funct Genomics (2007) 0.79
Structural genomics and structural biology: compare and contrast. Genome Biol (2004) 0.79
Alignment-free local structural search by writhe decomposition. Bioinformatics (2010) 0.79
Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: recurrence of tyrosine aminotransferase activity in the Iα subfamily. Proteins (2013) 0.78
PRECISION MEDICINE: DATA AND DISCOVERY FOR IMPROVED HEALTH AND THERAPY. Pac Symp Biocomput (2016) 0.78
A continuous fluorescence assay for the characterization of Nudix hydrolases. Anal Biochem (2013) 0.77
Structural genomics of minimal organisms: pipeline and results. Methods Mol Biol (2008) 0.77
Personalized medicine: from genotypes and molecular phenotypes towards therapy- session introduction. Pac Symp Biocomput (2014) 0.75
A novel plant enzyme with dual activity: an atypical Nudix hydrolase and a dipeptidyl peptidase III. Biol Chem (2017) 0.75
PLoS Computational Biology: a new community journal. PLoS Comput Biol (2005) 0.75
Developing computational biology. PLoS Comput Biol (2007) 0.75
Optimal and fast rotational alignment of volumes with missing data in Fourier space. J Struct Biol (2013) 0.75
PRECISION MEDICINE: DATA AND DISCOVERY FOR IMPROVED HEALTH AND THERAPY. Pac Symp Biocomput (2016) 0.75
PRECISION MEDICINE: FROM DIPLOTYPES TO DISPARITIES TOWARDS IMPROVED HEALTH AND THERAPIES. Pac Symp Biocomput (2018) 0.75
REGULATORY RNA. Pac Symp Biocomput (2016) 0.75
The future of genome-based medicine. Pac Symp Biocomput (2013) 0.75