Published in Bioinformatics on January 10, 2006
Comparative genomics and molecular dynamics of DNA repeats in eukaryotes. Microbiol Mol Biol Rev (2008) 3.35
Browsing repeats in genomes: Pygram and an application to non-coding region analysis. BMC Bioinformatics (2006) 1.65
InSatDb: a microsatellite database of fully sequenced insect genomes. Nucleic Acids Res (2006) 1.11
Organization of developmental enhancers in the Drosophila embryo. Nucleic Acids Res (2009) 1.06
Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference. BMC Genomics (2008) 0.99
Global patterns of sequence evolution in Drosophila. BMC Genomics (2007) 0.99
Genomic features of the human dopamine transporter gene and its potential epigenetic States: implications for phenotypic diversity. PLoS One (2010) 0.96
Comparative analysis of regulatory motif discovery tools for transcription factor binding sites. Genomics Proteomics Bioinformatics (2007) 0.95
Analysis of repetitive DNA distribution patterns in the Tribolium castaneum genome. Genome Biol (2008) 0.95
HighSSR: high-throughput SSR characterization and locus development from next-gen sequencing data. Bioinformatics (2012) 0.91
TRStalker: an efficient heuristic for finding fuzzy tandem repeats. Bioinformatics (2010) 0.87
Formation of regulatory modules by local sequence duplication. PLoS Comput Biol (2011) 0.85
Tandem repeats discovery service (TReaDS) applied to finding novel cis-acting factors in repeat expansion diseases. BMC Bioinformatics (2012) 0.81
Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells. Front Genet (2016) 0.79
Direct mapping of symbolic DNA sequence into frequency domain in global repeat map algorithm. Nucleic Acids Res (2012) 0.78
MsDetector: toward a standard computational tool for DNA microsatellites detection. Nucleic Acids Res (2012) 0.77
Searching microsatellites in DNA sequences: approaches used and tools developed. Physiol Mol Biol Plants (2011) 0.77
HeteroGenome: database of genome periodicity. Database (Oxford) (2014) 0.76
Recent computational approaches to understand gene regulation: mining gene regulation in silico. Curr Genomics (2007) 0.76
Optimal computation of all tandem repeats in a weighted sequence. Algorithms Mol Biol (2014) 0.75
Database of Periodic DNA Regions in Major Genomes. Biomed Res Int (2017) 0.75
Induction of a hemogenic program in mouse fibroblasts. Cell Stem Cell (2013) 2.71
Computational models for neurogenic gene expression in the Drosophila embryo. Curr Biol (2006) 2.69
A self-organizing system of repressor gradients establishes segmental complexity in Drosophila. Nature (2003) 2.21
The role of binding site cluster strength in Bicoid-dependent patterning in Drosophila. Proc Natl Acad Sci U S A (2005) 2.11
Identification of proteins associated with murine cytomegalovirus virions. J Virol (2004) 1.72
How the Dorsal gradient works: insights from postgenome technologies. Proc Natl Acad Sci U S A (2008) 1.70
Otd/Crx, a dual regulator for the specification of ommatidia subtypes in the Drosophila retina. Dev Cell (2003) 1.67
Distinction between color photoreceptor cell fates is controlled by Prospero in Drosophila. Dev Cell (2003) 1.63
Enhancer responses to similarly distributed antagonistic gradients in development. PLoS Comput Biol (2007) 1.21
Evolution of the ventral midline in insect embryos. Dev Cell (2006) 1.07
A rationale for the enhanceosome and other evolutionarily constrained enhancers. Curr Biol (2007) 1.04
Interactions of intergenic microRNAs with mRNAs of genes involved in carcinogenesis. Bioinformation (2012) 0.94
From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites. J Bioinform Comput Biol (2013) 0.93
Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo. Chaos (2013) 0.86
Time warping of evolutionary distant temporal gene expression data based on noise suppression. BMC Bioinformatics (2009) 0.85
FOXO3-mTOR metabolic cooperation in the regulation of erythroid cell maturation and homeostasis. Am J Hematol (2014) 0.85
Expression of podocalyxin separates the hematopoietic and vascular potentials of mouse embryonic stem cell-derived mesoderm. Stem Cells (2014) 0.83
Temporal waves of coherent gene expression during Drosophila embryogenesis. Bioinformatics (2010) 0.81
Toxicity of carbon dioxide: a review. Chem Res Toxicol (2011) 0.80
Analysis of bacterial RM-systems through genome-scale analysis and related taxonomy issues. In Silico Biol (2003) 0.79
Empirical potentials for ion binding in proteins. J Bioinform Comput Biol (2010) 0.75