Published in Bioinformatics on January 10, 2006
ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res (2009) 4.93
A bioinformatician's guide to metagenomics. Microbiol Mol Biol Rev (2008) 4.33
Community-wide analysis of microbial genome sequence signatures. Genome Biol (2009) 3.96
DarkHorse: a method for genome-wide prediction of horizontal gene transfer. Genome Biol (2007) 1.64
RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles. BMC Bioinformatics (2011) 1.23
The IncP-1 plasmid backbone adapts to different host bacterial species and evolves through homologous recombination. Nat Commun (2011) 1.16
Comparison of metagenomic samples using sequence signatures. BMC Genomics (2012) 1.10
New powerful statistics for alignment-free sequence comparison under a pattern transfer model. J Theor Biol (2011) 1.05
Estimating DNA coverage and abundance in metagenomes using a gamma approximation. Bioinformatics (2009) 0.97
A molecular study of microbe transfer between distant environments. PLoS One (2008) 0.96
Comparison of metatranscriptomic samples based on k-tuple frequencies. PLoS One (2014) 0.87
GSTaxClassifier: a genomic signature based taxonomic classifier for metagenomic data analysis. Bioinformation (2009) 0.85
Normal and compound poisson approximations for pattern occurrences in NGS reads. J Comput Biol (2012) 0.76
N-acetyl-L-cysteine affects growth, extracellular polysaccharide production, and bacterial biofilm formation on solid surfaces. Appl Environ Microbiol (2003) 1.31
The IncP-1 plasmid backbone adapts to different host bacterial species and evolves through homologous recombination. Nat Commun (2011) 1.16
Effects of environmental conditions on the nitrifying population dynamics in a pilot wastewater treatment plant. Environ Microbiol (2007) 1.10
Inactivation of ompX causes increased interactions of type 1 fimbriated Escherichia coli with abiotic surfaces. J Bacteriol (2004) 1.07
Bridging the gap between systems biology and medicine. Genome Med (2009) 1.07
Bacteriophage lytic to Desulfovibrio aespoeensis isolated from deep groundwater. ISME J (2009) 1.01
The choice of PCR primers has great impact on assessments of bacterial community diversity and dynamics in a wastewater treatment plant. PLoS One (2013) 0.94
The red alga Bonnemaisonia asparagoides regulates epiphytic bacterial abundance and community composition by chemical defence. FEMS Microbiol Ecol (2010) 0.87
Microbial community structure in activated sludge floc analysed by fluorescence in situ hybridization and its relation to floc stability. Water Res (2007) 0.87
New methods for analysis of spatial distribution and coaggregation of microbial populations in complex biofilms. Appl Environ Microbiol (2013) 0.84
Decay of Bacteroidales genetic markers in relation to traditional fecal indicators for water quality modeling of drinking water sources. Environ Sci Technol (2011) 0.82
Ecological role of a seaweed secondary metabolite for a colonizing bacterial community. Biofouling (2011) 0.81
Vertical distribution of nitrifying populations in bacterial biofilms from a full-scale nitrifying trickling filter. Environ Microbiol (2006) 0.81
Diversity and dynamics of Archaea in an activated sludge wastewater treatment plant. BMC Microbiol (2012) 0.80
Use of a quartz crystal microbalance to investigate the antiadhesive potential of N-acetyl-L-cysteine. Appl Environ Microbiol (2005) 0.79
Tools for T-RFLP data analysis using Excel. BMC Bioinformatics (2014) 0.78
NETGEM: Network Embedded Temporal GEnerative Model for gene expression data. BMC Bioinformatics (2011) 0.78
Characterisation of the behaviour of particles in biofilters for pre-treatment of drinking water. Water Res (2005) 0.77
A new order estimator for fixed and variable length Markov models with applications to DNA sequence similarity. Stat Appl Genet Mol Biol (2006) 0.77
Incorporating expert judgments in utility evaluation of bacteroidales qPCR assays for microbial source tracking in a drinking water source. Environ Sci Technol (2015) 0.76
Isolation and sequencing of the replication region of plasmid pBFp1 isolated from a marine biofilm. Plasmid (2004) 0.76
Estimation of pathogen concentrations in a drinking water source using hydrodynamic modelling and microbial source tracking. J Water Health (2012) 0.75
Undibacterium pigrum gen. nov., sp. nov., isolated from drinking water. Int J Syst Evol Microbiol (2007) 0.75
Short-term microbial release during rain events from on-site sewers and cattle in a surface water source. J Water Health (2013) 0.75