Effective similarity measures for expression profiles.

PubWeight™: 1.30‹?› | Rank: Top 10%

🔗 View Article (PMID 16595558)

Published in Bioinformatics on April 04, 2006

Authors

Golan Yona1, William Dirks, Shafquat Rahman, David M Lin

Author Affiliations

1: Department of Computer Science, Cornell University, NY, USA. golan@cs.technion.ac.il

Articles citing this

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function. Genome Biol (2008) 5.94

Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression. DNA Res (2009) 2.11

Independent component analysis: mining microarray data for fundamental human gene expression modules. J Biomed Inform (2010) 1.39

BIOZON: a hub of heterogeneous biological data. Nucleic Acids Res (2006) 1.39

Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data. Nucleic Acids Res (2009) 1.24

Supervised, semi-supervised and unsupervised inference of gene regulatory networks. Brief Bioinform (2013) 1.15

Individuality in harpsichord performance: disentangling performer- and piece-specific influences on interpretive choices. Front Psychol (2013) 0.93

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data. BMC Bioinformatics (2008) 0.93

Employing conservation of co-expression to improve functional inference. BMC Syst Biol (2008) 0.82

Comparison of profile similarity measures for genetic interaction networks. PLoS One (2013) 0.82

An effective method for network module extraction from microarray data. BMC Bioinformatics (2012) 0.81

Multivariate hypergeometric similarity measure. IEEE/ACM Trans Comput Biol Bioinform (2014) 0.80

Using evolutionary conserved modules in gene networks as a strategy to leverage high throughput gene expression queries. PLoS One (2010) 0.77

Articles by these authors

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res (2002) 40.03

Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res (2011) 11.32

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature (2008) 6.69

Early evolution of animal cell signaling and adhesion genes. Proc Natl Acad Sci U S A (2006) 2.20

Resequencing of nicotinic acetylcholine receptor genes and association of common and rare variants with the Fagerström test for nicotine dependence. Neuropsychopharmacology (2010) 1.17

Shmt1 heterozygosity impairs folate-dependent thymidylate synthesis capacity and modifies risk of Apc(min)-mediated intestinal cancer risk. Cancer Res (2011) 1.16

Nanoscale resolution, multicomponent biomolecular arrays generated by aligned printing with parylene peel-off. Nano Lett (2010) 0.96

Notch2 is required for maintaining sustentacular cell function in the adult mouse main olfactory epithelium. Dev Biol (2007) 0.95

EST2Prot: mapping EST sequences to proteins. BMC Genomics (2006) 0.94

Delta Protocadherin 10 is Regulated by Activity in the Mouse Main Olfactory System. Front Neural Circuits (2011) 0.88

Controlling microarray spot morphology with polymer liftoff arrays. Anal Chem (2007) 0.88

Comparing algorithms for clustering of expression data: how to assess gene clusters. Methods Mol Biol (2009) 0.88

Mthfd1 is a modifier of chemically induced intestinal carcinogenesis. Carcinogenesis (2010) 0.86

Novel subdomains of the mouse olfactory bulb defined by molecular heterogeneity in the nascent external plexiform and glomerular layers. BMC Dev Biol (2007) 0.84

Analysis of the gene regulatory program induced by the homeobox transcription factor distal-less 3 in mouse placenta. Endocrinology (2006) 0.83

retinoic acid, bromodeoxyuridine, and the Delta 205 mutant polyoma virus middle T antigen regulate expression levels of a common ensemble of proteins associated with early stages of inducing HL-60 leukemic cell differentiation. In Vitro Cell Dev Biol Anim (2005) 0.79

Effects of a multimodality blood conservation schema toward improvement of intraoperative hemoglobin levels and off-pump transfusions in coronary artery bypass graft surgery. Transfusion (2014) 0.75