Published in J Comput Biol on March 01, 2006
Using comparative genomics to reorder the human genome sequence into a virtual sheep genome. Genome Biol (2007) 1.79
The ABCs of MGR with DCJ. Evol Bioinform Online (2008) 1.41
The signal in the genomes. PLoS Comput Biol (2006) 1.18
The where and wherefore of evolutionary breakpoints. J Biol (2009) 0.86
Chromosome size in diploid eukaryotic species centers on the average length with a conserved boundary. Mol Biol Evol (2011) 0.76
Polyploidy and angiosperm diversification. Am J Bot (2009) 4.41
Structural dynamics of eukaryotic chromosome evolution. Science (2003) 3.57
Multichromosomal median and halving problems under different genomic distances. BMC Bioinformatics (2009) 2.38
Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases. Bioinformatics (2008) 1.63
Medians seek the corners, and other conjectures. BMC Bioinformatics (2012) 1.45
The ABCs of MGR with DCJ. Evol Bioinform Online (2008) 1.41
The distribution of genomic distance between random genomes. J Comput Biol (2006) 1.27
Genome halving with an outgroup. Evol Bioinform Online (2007) 1.27
The signal in the genomes. PLoS Comput Biol (2006) 1.18
Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. Bioinformatics (2008) 1.17
On the PATHGROUPS approach to rapid small phylogeny. BMC Bioinformatics (2011) 1.17
Phase change for the accuracy of the median value in estimating divergence time. BMC Bioinformatics (2013) 1.14
Tests for gene clustering. J Comput Biol (2003) 1.13
Genomic features in the breakpoint regions between syntenic blocks. Bioinformatics (2004) 1.12
Fractionation statistics. BMC Bioinformatics (2011) 1.09
Genome aliquoting with double cut and join. BMC Bioinformatics (2009) 1.07
Scaffold filling, contig fusion and comparative gene order inference. BMC Bioinformatics (2010) 1.03
Gene loss under neighborhood selection following whole genome duplication and the reconstruction of the ancestral Populus genome. J Bioinform Comput Biol (2009) 1.00
Analysis of gene order evolution beyond single-copy genes. Methods Mol Biol (2012) 0.99
Descendants of whole genome duplication within gene order phylogeny. J Comput Biol (2008) 0.98
The statistical analysis of spatially clustered genes under the maximum gap criterion. J Comput Biol (2005) 0.94
Rearrangement phylogeny of genomes in contig form. IEEE/ACM Trans Comput Biol Bioinform (2010) 0.94
Sets of medians in the non-geodesic pseudometric space of unsigned genomes with breakpoints. BMC Genomics (2014) 0.94
Genome halving with double cut and join. J Bioinform Comput Biol (2009) 0.94
Ancient eudicot hexaploidy meets ancestral eurosid gene order. BMC Genomics (2013) 0.92
Common intervals and symmetric difference in a model-free phylogenomics, with an application to streptophyte evolution. J Comput Biol (2007) 0.91
The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid. Comput Syst Bioinformatics Conf (2008) 0.90
Natural parameter values for generalized gene adjacency. J Comput Biol (2010) 0.90
Generalized gene adjacencies, graph bandwidth, and clusters in yeast evolution. IEEE/ACM Trans Comput Biol Bioinform (2009) 0.87
Improving gene network inference by comparing expression time-series across species, developmental stages or tissues. J Bioinform Comput Biol (2004) 0.86
Reversal distance for partially ordered genomes. Bioinformatics (2005) 0.85
Removing noise and ambiguities from comparative maps in rearrangement analysis. IEEE/ACM Trans Comput Biol Bioinform (2007) 0.85
Genome aliquoting revisited. J Comput Biol (2011) 0.85
Near-medians that avoid the corners; a combinatorial probability approach. BMC Genomics (2014) 0.84
Structural vs. functional mechanisms of duplicate gene loss following whole genome doubling. BMC Bioinformatics (2015) 0.84
A consolidation algorithm for genomes fractionated after higher order polyploidization. BMC Bioinformatics (2012) 0.82
Genetic and molecular control of folate-homocysteine metabolism in mutant mice. Mamm Genome (2002) 0.82
The dynamics of functional classes of plant genes in rediploidized ancient polyploids. BMC Bioinformatics (2013) 0.81
Paths and cycles in breakpoint graph of random multichromosomal genomes. J Comput Biol (2007) 0.81
Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution. BMC Bioinformatics (2012) 0.79
Listing all sorting reversals in quadratic time. Algorithms Mol Biol (2011) 0.78
Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes. BMC Bioinformatics (2012) 0.77
Practical aliquoting of flowering plant genomes. BMC Bioinformatics (2013) 0.77
Gene expression and fractionation resistance. BMC Genomics (2014) 0.75
Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants. BMC Genomics (2014) 0.75
Syntenic block overlap multiplicities with a panel of reference genomes provide a signature of ancient polyploidization events. BMC Genomics (2015) 0.75
Generalized adjacency and the conservation of gene clusters in genetic networks defined by synthetic lethals. BMC Bioinformatics (2012) 0.75
Evolutionary model for the statistical divergence of paralogous and orthologous gene pairs generated by whole genome duplication and speciation. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75
A statistically fair comparison of ancestral genome reconstructions, based on breakpoint and rearrangement distances. J Comput Biol (2010) 0.75
Scaffold filling under the breakpoint and related distances. IEEE/ACM Trans Comput Biol Bioinform (2012) 0.75
Listing all parsimonious reversal sequences: new algorithms and perspectives. J Comput Biol (2011) 0.75
The Kernel of Maximum Agreement Subtrees. IEEE/ACM Trans Comput Biol Bioinform (2012) 0.75