Bayesian inference of character evolution.

Bayesian phylogeography finds its roots. PLoS Comput Biol (2009) 10.99

Structural evolution of the protein kinase-like superfamily. PLoS Comput Biol (2005) 2.48

Complete mitochondrial genome and phylogeny of Pleistocene mammoth Mammuthus primigenius. PLoS Biol (2006) 2.13

Three roads diverged? Routes to phylogeographic inference. Trends Ecol Evol (2010) 1.74

Phylogeny of diving beetles reveals a coevolutionary arms race between the sexes. PLoS One (2007) 1.38

Amazonian amphibian diversity is primarily derived from late Miocene Andean lineages. PLoS Biol (2009) 1.34

Phylogenomics of the killer whale indicates ecotype divergence in sympatry. Heredity (Edinb) (2014) 1.29

The effect of recombination on the reconstruction of ancestral sequences. Genetics (2010) 1.25

Inference and characterization of horizontally transferred gene families using stochastic mapping. Mol Biol Evol (2009) 1.23

Diversity, relationships, and biogeography of the lambeosaurine dinosaurs from the European Archipelago, with description of the New Aralosaurin Canardia garonnensis. PLoS One (2013) 1.12

Evolution of stress-regulated gene expression in duplicate genes of Arabidopsis thaliana. PLoS Genet (2009) 1.09

Why do snails have hairs? A Bayesian inference of character evolution. BMC Evol Biol (2005) 1.06

Bayesian models for comparative analysis integrating phylogenetic uncertainty. BMC Evol Biol (2012) 1.04

Phylogenetics of tribe Orchideae (Orchidaceae: Orchidoideae) based on combined DNA matrices: inferences regarding timing of diversification and evolution of pollination syndromes. Ann Bot (2012) 1.01

Global warming favours light-coloured insects in Europe. Nat Commun (2014) 1.00

Inference of gain and loss events from phyletic patterns using stochastic mapping and maximum parsimony--a simulation study. Genome Biol Evol (2011) 0.98

Systematics of the Trichoderma harzianum species complex and the re-identification of commercial biocontrol strains. Mycologia (2015) 0.97

Testing for differentiation of microbial communities using phylogenetic methods: accounting for uncertainty of phylogenetic inference and character state mapping. Microb Ecol (2006) 0.96

Ancestral state reconstruction reveals multiple independent evolution of diagnostic morphological characters in the "Higher Oribatida" (Acari), conflicting with current classification schemes. BMC Evol Biol (2010) 0.94

Molecular evolution of the mtDNA encoded rps3 gene among filamentous ascomycetes fungi with an emphasis on the Ophiostomatoid fungi. J Mol Evol (2009) 0.88

Early Gnathostome Phylogeny Revisited: Multiple Method Consensus. PLoS One (2016) 0.88

Insights into the influence of priors in posterior mapping of discrete morphological characters: a case study in Annonaceae. PLoS One (2010) 0.87

Networks of lexical borrowing and lateral gene transfer in language and genome evolution. Bioessays (2013) 0.85

The evolution of eusociality in allodapine bees: workers began by waiting. Biol Lett (2010) 0.84

Phylodynamics of H5N1 Highly Pathogenic Avian Influenza in Europe, 2005-2010: Potential for Molecular Surveillance of New Outbreaks. Viruses (2015) 0.83

Phylogenetic analysis of erythritol catabolic loci within the Rhizobiales and proteobacteria. BMC Microbiol (2013) 0.82

Evolution of growth habit, inflorescence architecture, flower size, and fruit type in Rubiaceae: its ecological and evolutionary implications. PLoS One (2012) 0.81

Body size evolution in extant Oryzomyini rodents: Cope's rule or miniaturization? PLoS One (2012) 0.80

CoPAP: Coevolution of presence-absence patterns. Nucleic Acids Res (2013) 0.80

Limitations to estimating bacterial cross-species transmission using genetic and genomic markers: inferences from simulation modeling. Evol Appl (2014) 0.79

On the origin of mongrels: evolutionary history of free-breeding dogs in Eurasia. Proc Biol Sci (2015) 0.78

Conceptual issues in Bayesian divergence time estimation. Philos Trans R Soc Lond B Biol Sci (2016) 0.77

Hidden Markov models for evolution and comparative genomics analysis. PLoS One (2013) 0.77

Some structural aspects of language are more stable than others: a comparison of seven methods. PLoS One (2013) 0.77

WARACS: Wrappers to Automate the Reconstruction of Ancestral Character States. Appl Plant Sci (2016) 0.75

The Impact of Reconstruction Methods, Phylogenetic Uncertainty and Branch Lengths on Inference of Chromosome Number Evolution in American Daisies (Melampodium, Asteraceae). PLoS One (2016) 0.75

SFREEMAP - A simulation-free tool for stochastic mapping. BMC Bioinformatics (2017) 0.75

Ancestral State Reconstruction Reveals Rampant Homoplasy of Diagnostic Morphological Characters in Urticaceae, Conflicting with Current Classification Schemes. PLoS One (2015) 0.75

Efficient Recycled Algorithms for Quantitative Trait Models on Phylogenies. Genome Biol Evol (2016) 0.75

Flower development of Goniorrhachis marginata reveals new insights into the evolution of the florally diverse detarioid legumes. Ann Bot (2016) 0.75

A DNA and morphology based phylogenetic framework of the ant genus Lasius with hypotheses for the evolution of social parasitism and fungiculture. BMC Evol Biol (2008) 0.75

The conquering of North America: dated phylogenetic and biogeographic inference of migratory behavior in bee hummingbirds. BMC Evol Biol (2017) 0.75