Published in Genes Dev on July 01, 2006
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Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli. J Bacteriol (2006) 1.86
Proteotoxic stress induces a cell-cycle arrest by stimulating Lon to degrade the replication initiator DnaA. Cell (2013) 1.86
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The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistance. J Bacteriol (2008) 1.67
Heat shock transcription factor σ32 co-opts the signal recognition particle to regulate protein homeostasis in E. coli. PLoS Biol (2013) 1.51
Molecular mechanisms of ethanol-induced pathogenesis revealed by RNA-sequencing. PLoS Pathog (2010) 1.47
The extracytoplasmic stress factor, sigmaE, is required to maintain cell envelope integrity in Escherichia coli. PLoS One (2008) 1.44
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ChIP on Chip: surprising results are often artifacts. BMC Genomics (2010) 1.24
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Analysis of sigma32 mutants defective in chaperone-mediated feedback control reveals unexpected complexity of the heat shock response. Proc Natl Acad Sci U S A (2007) 1.04
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YbeY, a heat shock protein involved in translation in Escherichia coli. J Bacteriol (2009) 0.99
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Convergence of the transcriptional responses to heat shock and singlet oxygen stresses. PLoS Genet (2012) 0.98
Reduced capacity of alternative sigmas to melt promoters ensures stringent promoter recognition. Genes Dev (2009) 0.98
Pivotal role of the Francisella tularensis heat-shock sigma factor RpoH. Microbiology (2009) 0.97
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The origin of a novel gene through overprinting in Escherichia coli. BMC Evol Biol (2008) 0.94
Transcriptomic analysis of Escherichia coli O157:H7 and K-12 cultures exposed to inorganic and organic acids in stationary phase reveals acidulant- and strain-specific acid tolerance responses. Appl Environ Microbiol (2010) 0.92
The heat shock protein YbeY is required for optimal activity of the 30S ribosomal subunit. J Bacteriol (2010) 0.91
Stress responses of shewanella. Int J Microbiol (2011) 0.89
Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces. BMC Genomics (2014) 0.89
Global gene expression and phenotypic analysis of a Vibrio cholerae rpoH deletion mutant. J Bacteriol (2006) 0.89
Sxy induces a CRP-S regulon in Escherichia coli. J Bacteriol (2009) 0.89
The role of sigma factor RpoH1 in the pH stress response of Sinorhizobium meliloti. BMC Microbiol (2010) 0.88
Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalanine-labeled peptides with diagonal chromatography. Mol Cell Proteomics (2009) 0.88
YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli. J Mol Biol (2011) 0.88
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Technical considerations in using DNA microarrays to define regulons. Methods (2008) 0.87
Growth phase- and cell division-dependent activation and inactivation of the {sigma}32 regulon in Escherichia coli. J Bacteriol (2008) 0.86
Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice. Appl Environ Microbiol (2009) 0.86
RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shock. BMC Genomics (2014) 0.85
Physiological response to membrane protein overexpression in E. coli. Mol Cell Proteomics (2011) 0.85
Assembly of lipopolysaccharide in Escherichia coli requires the essential LapB heat shock protein. J Biol Chem (2014) 0.85
Translation quality control is critical for bacterial responses to amino acid stress. Proc Natl Acad Sci U S A (2016) 0.85
DsrR, a novel IscA-like protein lacking iron- and Fe-S-binding functions, involved in the regulation of sulfur oxidation in Allochromatium vinosum. J Bacteriol (2010) 0.84
Integrated transcriptomic and proteomic analysis of the physiological response of Escherichia coli O157:H7 Sakai to steady-state conditions of cold and water activity stress. Mol Cell Proteomics (2011) 0.83
Proteolysis in the Escherichia coli heat shock response: a player at many levels. Curr Opin Microbiol (2011) 0.83
Integrating protein homeostasis strategies in prokaryotes. Cold Spring Harb Perspect Biol (2011) 0.83
IscR regulates RNase LS activity by repressing rnlA transcription. Genetics (2010) 0.83
Cas3 is a limiting factor for CRISPR-Cas immunity in Escherichia coli cells lacking H-NS. BMC Microbiol (2016) 0.82
Transcription analysis of central metabolism genes in Escherichia coli. Possible roles of sigma38 in their expression, as a response to carbon limitation. PLoS One (2009) 0.82
Promoters of Escherichia coli versus promoter islands: function and structure comparison. PLoS One (2013) 0.81
Promoter recognition by bacterial alternative sigma factors: the price of high selectivity? Genes Dev (2009) 0.81
Insights into the function of YciM, a heat shock membrane protein required to maintain envelope integrity in Escherichia coli. J Bacteriol (2013) 0.81
Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris: role and regulation of {sigma}E-dependent activity. J Bacteriol (2010) 0.81
Analysis of the Salmonella regulatory network suggests involvement of SsrB and H-NS in σ(E)-regulated SPI-2 gene expression. Front Microbiol (2015) 0.80
New insights on the reorganization of gene transcription in Pseudomonas putida KT2440 at elevated pressure. Microb Cell Fact (2013) 0.80
The two-component system CpxR/A represses the expression of Salmonella virulence genes by affecting the stability of the transcriptional regulator HilD. Front Microbiol (2015) 0.80
First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes. Mol Biol Evol (2015) 0.80
Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt downshift in water activity. PLoS One (2014) 0.80
A comparative kinetic and thermodynamic perspective of the σ-competition model in Escherichia coli. Biophys J (2012) 0.80
The MiaA tRNA modification enzyme is necessary for robust RpoS expression in Escherichia coli. J Bacteriol (2013) 0.80
Nonnative disulfide bond formation activates the σ32-dependent heat shock response in Escherichia coli. J Bacteriol (2013) 0.80
Proteome analysis of the UVB-resistant marine bacterium Photobacterium angustum S14. PLoS One (2012) 0.80
Identification of commensal Escherichia coli genes involved in biofilm resistance to pathogen colonization. PLoS One (2013) 0.79
Using DNA microarrays to assay part function. Methods Enzymol (2011) 0.79
Transcriptional analysis of the hsp70 gene in a haloarchaeon Natrinema sp. J7 under heat and cold stress. Extremophiles (2009) 0.79
Mapping the Regulatory Network for Salmonella enterica Serovar Typhimurium Invasion. MBio (2016) 0.78
A bacteriophage-encoded J-domain protein interacts with the DnaK/Hsp70 chaperone and stabilizes the heat-shock factor σ32 of Escherichia coli. PLoS Genet (2012) 0.78
Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks. Adv Microb Physiol (2012) 0.78
YoeB toxin is activated during thermal stress. Microbiologyopen (2015) 0.78
Anti-Sigma Factors in E. coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability. Curr Genomics (2013) 0.78
Genetic and phenotypic characterization of the heat shock response in Pseudomonas putida. Microbiologyopen (2014) 0.78
Expanding the regulatory network governed by the extracytoplasmic function sigma factor σH in Corynebacterium glutamicum. J Bacteriol (2014) 0.78
"Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response. BMC Genomics (2013) 0.77
Global genome response of Escherichia coli O157∶H7 Sakai during dynamic changes in growth kinetics induced by an abrupt temperature downshift. PLoS One (2014) 0.77
Transcription of Ehrlichia chaffeensis genes is accomplished by RNA polymerase holoenzyme containing either sigma 32 or sigma 70. PLoS One (2013) 0.77
Escherichia coli thioredoxin-like protein YbbN contains an atypical tetratricopeptide repeat motif and is a negative regulator of GroEL. J Biol Chem (2011) 0.77
Predicting statistical properties of open reading frames in bacterial genomes. PLoS One (2012) 0.76
Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries. Microbiome (2015) 0.76
Transient growth arrest in Escherichia coli induced by chromosome condensation. PLoS One (2013) 0.76
Expression of the translocator protein (TSPO) from Pseudomonas fluorescens Pf0-1 requires the stress regulatory sigma factors AlgU and RpoH. Front Microbiol (2015) 0.76
SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals. PeerJ (2016) 0.75
The Two-Component System CpxRA Negatively Regulates the Locus of Enterocyte Effacement of Enterohemorrhagic Escherichia coli Involving σ(32) and Lon protease. Front Cell Infect Microbiol (2016) 0.75
A Sinorhizobium meliloti RpoH-Regulated Gene Is Involved in Iron-Sulfur Protein Metabolism and Effective Plant Symbiosis under Intrinsic Iron Limitation. J Bacteriol (2016) 0.75
The Escherichia coli rpoS-dependent htrC gene is not involved in the heat shock response. J Bacteriol (2006) 0.75
Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling. Mol Cell Proteomics (2016) 0.75
DegP Chaperone Suppresses Toxic Inner Membrane Translocation Intermediates. PLoS One (2016) 0.75
Silencing of Essential Genes within a Highly Coordinated Operon in Escherichia coli. Appl Environ Microbiol (2015) 0.75
Modulation of the E. coli rpoH Temperature Sensor with Triptycene-Based Small Molecules. Angew Chem Int Ed Engl (2016) 0.75
The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase. PLoS One (2017) 0.75
Global Gene-expression Analysis of the Response of Salmonella Enteritidis to Egg White Exposure Reveals Multiple Egg White-imposed Stress Responses. Front Microbiol (2017) 0.75
The Potential Link between Thermal Resistance and Virulence in Salmonella: A Review. Front Vet Sci (2017) 0.75
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The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coli. Mol Microbiol (2010) 1.04
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An extra-cytoplasmic function sigma factor and anti-sigma factor control carotenoid biosynthesis in Azospirillum brasilense. Microbiology (2008) 0.79
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The crystal structure of the periplasmic domain of Vibrio parahaemolyticus CpxA. Protein Sci (2012) 0.78
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