Published in Bioinformatics on July 26, 2006
RNATOPS-W: a web server for RNA structure searches of genomes. Bioinformatics (2009) 0.75
RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints. Nucleic Acids Res (2007) 0.75
The ecoresponsive genome of Daphnia pulex. Science (2011) 6.55
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (2010) 5.56
Multiple-filled skutterudites: high thermoelectric figure of merit through separately optimizing electrical and thermal transports. J Am Chem Soc (2011) 3.21
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinformatics (2011) 3.03
Introducing meta-services for biomedical information extraction. Genome Biol (2008) 2.78
The transcriptional diversity of 25 Drosophila cell lines. Genome Res (2010) 2.47
Bleeding complications and liver injuries during phenprocoumon treatment: a multicentre prospective observational study in internal medicine departments. Dtsch Arztebl Int (2013) 2.37
Expression of mutant p53 proteins implicates a lineage relationship between neural stem cells and malignant astrocytic glioma in a murine model. Cancer Cell (2009) 2.14
Epilepsy informatics and an ontology-driven infrastructure for large database research and patient care in epilepsy. Epilepsia (2013) 2.11
Corticosteroid therapy for severe community-acquired pneumonia: a meta-analysis. Respir Care (2013) 2.09
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression. Nucleic Acids Res (2009) 2.03
Microbiology and prognostic factors of hospital- and community-acquired aspiration pneumonia in respiratory intensive care unit. Am J Infect Control (2013) 2.03
An inherently bifunctional subset of Foxp3+ T helper cells is controlled by the transcription factor eos. Immunity (2013) 1.98
Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer. BMC Med Genomics (2009) 1.91
Stepwise metastatic human hepatocellular carcinoma cell model system with multiple metastatic potentials established through consecutive in vivo selection and studies on metastatic characteristics. J Cancer Res Clin Oncol (2004) 1.86
RAPSearch: a fast protein similarity search tool for short reads. BMC Bioinformatics (2011) 1.83
Genome-wide DNA methylation analysis reveals novel epigenetic changes in chronic lymphocytic leukemia. Epigenetics (2012) 1.80
COMPAM :visualization of combining pairwise alignments for multiple genomes. Bioinformatics (2005) 1.67
Addressing tobacco use disorder in smokers in early remission from alcohol dependence: the case for integrating smoking cessation services in substance use disorder treatment programs. Clin Psychol Rev (2010) 1.67
Influence of endothelial nitric oxide synthase gene polymorphisms (-786T>C, 4a4b, 894G>T) in Korean patients with coronary artery disease. Thromb Res (2006) 1.63
Th17 immunity in patients with allergic asthma. Int Arch Allergy Immunol (2009) 1.58
EpiDEA: extracting structured epilepsy and seizure information from patient discharge summaries for cohort identification. AMIA Annu Symp Proc (2012) 1.57
Oncogenic ETS proteins mimic activated RAS/MAPK signaling in prostate cells. Genes Dev (2011) 1.56
Prognostic DNA methylation biomarkers in ovarian cancer. Clin Cancer Res (2006) 1.53
Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care. J Am Med Inform Assoc (2013) 1.52
PathFinder: mining signal transduction pathway segments from protein-protein interaction networks. BMC Bioinformatics (2007) 1.48
Induction of abnormal proliferation by nonmyelinating schwann cells triggers neurofibroma formation. Cancer Cell (2008) 1.46
No association between XRCC1 gene Arg194Trp polymorphism and risk of lung cancer: evidence based on an updated cumulative meta-analysis. Tumour Biol (2014) 1.43
Uvrag targeting by Mir125a and Mir351 modulates autophagy associated with Ewsr1 deficiency. Autophagy (2015) 1.42
Extraordinary photoluminescence and strong temperature/angle-dependent Raman responses in few-layer phosphorene. ACS Nano (2014) 1.38
SCARFACE encodes an ARF-GAP that is required for normal auxin efflux and vein patterning in Arabidopsis. Plant Cell (2006) 1.37
OPIC: Ontology-driven Patient Information Capturing system for epilepsy. AMIA Annu Symp Proc (2012) 1.33
A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences. BMC Genomics (2010) 1.29
Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance. Bioinformatics (2008) 1.27
Linking DNA methyltransferases to epigenetic marks and nucleosome structure genome-wide in human tumor cells. Cell Rep (2012) 1.27
Gut pathology and responses to the microsporidium Nosema ceranae in the honey bee Apis mellifera. PLoS One (2012) 1.24
Rai1 haploinsufficiency causes reduced Bdnf expression resulting in hyperphagia, obesity and altered fat distribution in mice and humans with no evidence of metabolic syndrome. Hum Mol Genet (2010) 1.17
Improving cancer classification accuracy using gene pairs. PLoS One (2010) 1.17
De novo identification of LTR retrotransposons in eukaryotic genomes. BMC Genomics (2007) 1.17
Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing. Nucleic Acids Res (2011) 1.15
Evaluation of a novel Conjunctive Exploratory Navigation Interface for consumer health information: a crowdsourced comparative study. J Med Internet Res (2014) 1.15
Increased expression of hyaluronic acid binding protein 1 is correlated with poor prognosis in patients with breast cancer. J Surg Oncol (2009) 1.15
Function and evolution of DNA methylation in Nasonia vitripennis. PLoS Genet (2013) 1.14
Paraholcoglossum and Tsiorchis, two new orchid genera established by molecular and morphological analyses of the Holcoglossum alliance. PLoS One (2011) 1.09
IL-23 signaling enhances Th2 polarization and regulates allergic airway inflammation. Cell Res (2009) 1.08
A method to determine the necessity for global signal regression in resting-state fMRI studies. Magn Reson Med (2012) 1.08
Abnormal insula functional network is associated with episodic memory decline in amnestic mild cognitive impairment. Neuroimage (2012) 1.07
Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing. PLoS One (2010) 1.06
Quercetin-supplemented diets lower blood pressure and attenuate cardiac hypertrophy in rats with aortic constriction. J Cardiovasc Pharmacol (2006) 1.05
A multistate empirical valence bond description of protonatable amino acids. J Phys Chem A (2006) 1.05
Integrated analysis of genome-wide DNA methylation and gene expression profiles in molecular subtypes of breast cancer. Nucleic Acids Res (2013) 1.03
Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum. BMC Genomics (2010) 1.02
Light extraction enhancement from nano-imprinted photonic crystal GaN-based blue light-emitting diodes. Opt Express (2006) 1.01
Genetic analysis of Agrobacterium tumefaciens unipolar polysaccharide production reveals complex integrated control of the motile-to-sessile switch. Mol Microbiol (2013) 1.01
GAME: a simple and efficient whole genome alignment method using maximal exact match filtering. Comput Biol Chem (2005) 1.01
Role of STIM1/Orai1-mediated store-operated Ca²⁺ entry in airway smooth muscle cell proliferation. J Appl Physiol (1985) (2011) 1.00
SimQ: real-time retrieval of similar consumer health questions. J Med Internet Res (2015) 0.99
ESTPiper--a web-based analysis pipeline for expressed sequence tags. BMC Genomics (2009) 0.99
Risk factor comparison and clinical analysis of early and late bronchopleural fistula after non-small cell lung cancer surgery. Ann Thorac Surg (2009) 0.99
Gene teams with relaxed proximity constraint. Proc IEEE Comput Syst Bioinform Conf (2005) 0.98
Prevalence of hepatitis B virus and hepatitis C virus in patients with human immunodeficiency virus infection in Central China. Arch Virol (2013) 0.98
Electrophysiological signal analysis and visualization using Cloudwave for epilepsy clinical research. Stud Health Technol Inform (2013) 0.97
An analysis of FMA using structural self-bisimilarity. J Biomed Inform (2013) 0.97
Inducible heat shock protein 70 promotes myelin autoantigen presentation by the HLA class II. J Immunol (2004) 0.96
Profiling a Caenorhabditis elegans behavioral parametric dataset with a supervised K-means clustering algorithm identifies genetic networks regulating locomotion. J Neurosci Methods (2011) 0.95
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Bioinformatics (2006) 0.94
The incidence of thyroid cancer is affected by the characteristics of a healthcare system. J Korean Med Sci (2012) 0.94
Evaluation of protein pigment epithelium-derived factor (PEDF) and microvessel density (MVD) as prognostic indicators in breast cancer. J Cancer Res Clin Oncol (2010) 0.94
Structural rearrangements of the 10-23 DNAzyme to beta 3 integrin subunit mRNA induced by cations and their relations to the catalytic activity. J Biol Chem (2003) 0.93
Distinct and overlapping control of 5-methylcytosine and 5-hydroxymethylcytosine by the TET proteins in human cancer cells. Genome Biol (2014) 0.93
Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinformatics (2013) 0.93
De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system. BMC Genomics (2012) 0.93
Microarray data mining using landmark gene-guided clustering. BMC Bioinformatics (2008) 0.93
Enantioselective synthesis of a diastereomer of iriomoteolide-1a. What is the correct structure of the natural product? Org Lett (2010) 0.93
Neural basis of the association between depressive symptoms and memory deficits in nondemented subjects: resting-state fMRI study. Hum Brain Mapp (2011) 0.93
Altered expressions of helper T cell (Th)1, Th2, and Th17 cytokines in CD8(+) and γδ T cells in patients with allergic asthma. J Asthma (2011) 0.93
Increased expression of CD86 and reduced production of IL-12 and IL-10 by monocyte-derived dendritic cells from allergic asthmatics and their effects on Th1- and Th2-type cytokine balance. Respiration (2005) 0.92
OnWARD: ontology-driven web-based framework for multi-center clinical studies. J Biomed Inform (2011) 0.92
Synthesis of the C1-C12 fragment of iriomoteolide 1a by sequential catalytic asymmetric vinylogous aldol reactions. Org Lett (2008) 0.92
A machine-learning approach to combined evidence validation of genome assemblies. Bioinformatics (2008) 0.91
Calcium imaging of multiple neurons in freely behaving C. elegans. J Neurosci Methods (2012) 0.91
Annotation confidence score for genome annotation: a genome comparison approach. Bioinformatics (2009) 0.91
New anti-cancer strategies: epigenetic therapies and biomarkers. Front Biosci (2005) 0.91
Different human papillomavirus 16/18 infection in Chinese non-small cell lung cancer patients living in Wuhan, China. Jpn J Clin Oncol (2006) 0.91
Predicted disappearance of Cephalantheropsis obcordata in Luofu Mountain due to changes in rainfall patterns. PLoS One (2012) 0.90
Heart beats in the cloud: distributed analysis of electrophysiological 'Big Data' using cloud computing for epilepsy clinical research. J Am Med Inform Assoc (2013) 0.90
SNP-based large-scale identification of allele-specific gene expression in human B cells. Gene (2011) 0.89
Knowledge guided analysis of microarray data. J Biomed Inform (2005) 0.89
MiDas: automatic extraction of a common domain of discourse in sleep medicine for multi-center data integration. AMIA Annu Symp Proc (2011) 0.89
Relationship between urinary cysteinyl leukotriene E4 levels and clinical response to antileukotriene treatment in patients with asthma. Lung (2007) 0.89
LTR retroelements in the genome of Daphnia pulex. BMC Genomics (2010) 0.88
An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits. BMC Genomics (2014) 0.88
Dissecting the Ambiguity of FMA Concept Names Using Taxonomy and Partonomy Structural Information. AMIA Jt Summits Transl Sci Proc (2013) 0.88
Promoting effects of IL-13 on Ca2+ release and store-operated Ca2+ entry in airway smooth muscle cells. Pulm Pharmacol Ther (2010) 0.88
Fast lipid and water levels by extraction with spatial smoothing (FLAWLESS): three-dimensional volume fat/water separation at 7 Tesla. J Magn Reson Imaging (2011) 0.88