Published in J Am Soc Mass Spectrom on August 24, 2006
On the dynamics of fragment isomerization in collision-induced dissociation of peptides. J Phys Chem A (2008) 0.88
Ammonia elimination from protonated nucleobases and related synthetic substrates. J Am Soc Mass Spectrom (2007) 0.80
Gas-phase fragmentation of oligoproline peptide ions lacking easily mobilizable protons. J Am Soc Mass Spectrom (2013) 0.79
The influence glutamic acid in protonated b3 → b2 formation from VGEIG and related analogs. Int J Mass Spectrom (2012) 0.78
Influence of a Gamma Amino Acid on the Structures and Reactivity of Peptide a(3) Ions. Int J Mass Spectrom (2012) 0.75
Participation of C-H Protons in the Dissociation of a Proton Deficient Dipeptide. J Am Soc Mass Spectrom (2017) 0.75
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res (2004) 10.40
Fragmentation pathways of protonated peptides. Mass Spectrom Rev (2005) 3.36
GOPET: a tool for automated predictions of Gene Ontology terms. BMC Bioinformatics (2006) 1.75
ESTAnnotator: A tool for high throughput EST annotation. Nucleic Acids Res (2003) 1.56
Applying Support Vector Machines for Gene Ontology based gene function prediction. BMC Bioinformatics (2004) 1.47
A task framework for the web interface W2H. Bioinformatics (2003) 1.33
Mechanism of primary proton transfer in bacteriorhodopsin. Structure (2004) 1.17
Scrambling of sequence information in collision-induced dissociation of peptides. J Am Chem Soc (2006) 1.14
Infrared spectroscopy and theoretical studies on gas-phase protonated leu-enkephalin and its fragments: direct experimental evidence for the mobile proton. J Am Chem Soc (2007) 1.13
Towards understanding the tandem mass spectra of protonated oligopeptides. 1: mechanism of amide bond cleavage. J Am Soc Mass Spectrom (2004) 1.13
Sequence-scrambling fragmentation pathways of protonated peptides. J Am Chem Soc (2008) 1.08
SERpredict: detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements. BMC Genet (2007) 1.05
Spectroscopic and theoretical evidence for oxazolone ring formation in collision-induced dissociation of peptides. J Am Chem Soc (2005) 1.01
Key role of electrostatic interactions in bacteriorhodopsin proton transfer. J Am Chem Soc (2004) 1.00
Proton-driven amide bond-cleavage pathways of gas-phase peptide ions lacking mobile protons. J Am Chem Soc (2009) 0.98
The effect of the initial water of hydration on the energetics, structures, and H/D exchange mechanism of a family of pentapeptides: an experimental and theoretical study. J Am Chem Soc (2003) 0.96
Infrared spectroscopy of fragments of protonated peptides: direct evidence for macrocyclic structures of b5 ions. J Am Chem Soc (2009) 0.96
Towards understanding some ion intensity relationships for the tandem mass spectra of protonated peptides. Rapid Commun Mass Spectrom (2002) 0.96
Combined quantum chemical and RRKM modeling of the main fragmentation pathways of protonated GGG. II. Formation of b(2), y(1), and y(2) ions. Rapid Commun Mass Spectrom (2002) 0.96
Towards understanding the tandem mass spectra of protonated oligopeptides. 2: The proline effect in collision-induced dissociation of protonated Ala-Ala-Xxx-Pro-Ala (Xxx = Ala, Ser, Leu, Val, Phe, and Trp). J Am Soc Mass Spectrom (2011) 0.96
Key role of active-site water molecules in bacteriorhodopsin proton-transfer reactions. J Phys Chem B (2008) 0.91
The histidine effect. Electron transfer and capture cause different dissociations and rearrangements of histidine peptide cation-radicals. J Am Chem Soc (2010) 0.91
Effect of the His residue on the cyclization of b ions. J Am Soc Mass Spectrom (2010) 0.91
On the dynamics of fragment isomerization in collision-induced dissociation of peptides. J Phys Chem A (2008) 0.88
Backbone cleavages and sequential loss of carbon monoxide and ammonia from protonated AGG: a combined tandem mass spectrometry, isotope labeling, and theoretical study. J Am Soc Mass Spectrom (2007) 0.87
Influence of size on apparent scrambling of sequence during CID of b-type ions. J Am Soc Mass Spectrom (2009) 0.87
Cyclization and rearrangement reactions of a(n) fragment ions of protonated peptides. J Am Chem Soc (2010) 0.87
Stepwise solvation of an amino acid: the appearance of zwitterionic structures. J Phys Chem A (2007) 0.86
Genomic analysis of Xenopus organizer function. BMC Dev Biol (2006) 0.86
What is the structure of b(2) ions generated from doubly protonated tryptic peptides? J Am Soc Mass Spectrom (2008) 0.85
Structure of [M + H - H(2)O](+) from protonated tetraglycine revealed by tandem mass spectrometry and IRMPD spectroscopy. J Phys Chem A (2010) 0.85
Gas-phase structure and fragmentation pathways of singly protonated peptides with N-terminal arginine. J Phys Chem B (2010) 0.85
Infrared spectroscopy of fragments from doubly protonated tryptic peptides. Chemphyschem (2009) 0.85
Modeling of the gas-phase ion chemistry of protonated arginine. J Mass Spectrom (2004) 0.84
Automatic detection of exonic splicing enhancers (ESEs) using SVMs. BMC Bioinformatics (2008) 0.84
Long-distance proton transfer with a break in the bacteriorhodopsin active site. J Am Chem Soc (2009) 0.84
Why are a(3) ions rarely observed? J Am Soc Mass Spectrom (2008) 0.84
Revising the proton affinity scale of the naturally occurring alpha-amino acids. J Am Soc Mass Spectrom (2006) 0.83
Vibrational spectroscopy and conformational structure of protonated polyalanine peptides isolated in the gas phase. J Phys Chem A (2008) 0.83
A theoretical study of structures and electron affinities of radical anions of guanine-cytosine, adenine-thymine, and hypoxanthine-cytosine base pairs. J Comput Chem (2004) 0.83
Influence of amino acid side chains on apparent selective opening of cyclic b5 ions. J Am Soc Mass Spectrom (2010) 0.83
Structure and reactivity of a(n) and a(n) peptide fragments investigated using isotope labeling, tandem mass spectrometry, and density functional theory calculations. J Am Soc Mass Spectrom (2008) 0.83
Intrinsic hydration of monopositive uranyl hydroxide, nitrate, and acetate cations. J Am Soc Mass Spectrom (2004) 0.82
Diagnosing the protonation site of b2 peptide fragment ions using IRMPD in the X-H (X = O, N, and C) stretching region. J Am Soc Mass Spectrom (2011) 0.82
Carboxyl-catalyzed prototropic rearrangements in histidine peptide radicals upon electron transfer: effects of peptide sequence and conformation. J Am Chem Soc (2009) 0.81
Mechanism-based inactivation of human leukocyte elastase via an enzyme-induced sulfonamide fragmentation process. Arch Biochem Biophys (2004) 0.81
Suppression of the back proton-transfer from Asp85 to the retinal Schiff base in bacteriorhodopsin: a theoretical analysis of structural elements. J Struct Biol (2006) 0.81
Adiabatic electron affinities of the polyhydrated adenine-thymine base pair: a density functional study. J Phys Chem A (2005) 0.81
DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes. BMC Bioinformatics (2009) 0.80
Infrared fingerprint spectroscopy and theoretical studies of potassium ion tagged amino acids and peptides in the gas phase. J Am Chem Soc (2005) 0.80
Profiling of cyclic hexadepsipeptides roseotoxins synthesized in vitro and in vivo: a combined tandem mass spectrometry and quantum chemical study. Eur J Mass Spectrom (Chichester, Eng) (2003) 0.79
Intramolecular condensation reactions in protonated dipeptides: carbon monoxide, water, and ammonia losses in competition. J Am Soc Mass Spectrom (2004) 0.78
Using gas-phase guest-host chemistry to probe the structures of b ions of peptides. J Am Soc Mass Spectrom (2012) 0.78
Fragmentation of doubly-protonated Pro-His-Xaa tripeptides: formation of b(2)(2+) ions. J Am Soc Mass Spectrom (2009) 0.78
Zundel-type H-bonding in biomolecular ions. J Am Soc Mass Spectrom (2014) 0.77
Conformation-specific spectroscopy of peptide fragment ions in a low-temperature ion trap. J Am Soc Mass Spectrom (2012) 0.77
Formation of iminium ions by fragmentation of a2 ions. Rapid Commun Mass Spectrom (2004) 0.76
IR spectroscopy of b4 fragment ions of protonated pentapeptides in the X-H (X = C, N, O) region. J Phys Chem A (2013) 0.76
Influence of a 4-aminomethylbenzoic acid residue on competitive fragmentation pathways during collision-induced dissociation of metal-cationized peptides. Rapid Commun Mass Spectrom (2007) 0.75
Focus issue on peptide fragmentation. J Am Soc Mass Spectrom (2008) 0.75
Assigning signs to the electronic nonadiabatic coupling terms: the H2,O system as a case study. J Chem Phys (2005) 0.75