PubRank

Marc A Marti-Renom

Author PubWeight™ 76.92‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Comparative protein structure modeling using MODELLER. Curr Protoc Protein Sci 2007 5.81
2 MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res 2004 4.54
3 Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data. Nat Rev Genet 2013 4.38
4 Tools for comparative protein structure modeling and analysis. Nucleic Acids Res 2003 3.68
5 The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation. Mol Cell 2011 3.61
6 The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules. Nat Struct Mol Biol 2010 3.39
7 Whole-genome sequencing for rapid susceptibility testing of M. tuberculosis. N Engl J Med 2013 2.63
8 EVA: Evaluation of protein structure prediction servers. Nucleic Acids Res 2003 2.50
9 The C-type lectin fold as an evolutionary solution for massive sequence variation. Nat Struct Mol Biol 2005 2.13
10 Refinement of protein structures by iterative comparative modeling and CryoEM density fitting. J Mol Biol 2006 2.06
11 MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res 2008 2.02
12 ModView, visualization of multiple protein sequences and structures. Bioinformatics 2003 1.99
13 A composite score for predicting errors in protein structure models. Protein Sci 2006 1.92
14 Structure-based assessment of missense mutations in human BRCA1: implications for breast and ovarian cancer predisposition. Cancer Res 2004 1.84
15 Alignment of multiple protein structures based on sequence and structure features. Protein Eng Des Sel 2009 1.43
16 Variable gap penalty for protein sequence-structure alignment. Protein Eng Des Sel 2006 1.34
17 RNA structure alignment by a unit-vector approach. Bioinformatics 2008 1.27
18 SARA: a server for function annotation of RNA structures. Nucleic Acids Res 2009 1.25
19 Structure determination of genomic domains by satisfaction of spatial restraints. Chromosome Res 2011 1.11
20 Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans. Hum Mutat 2008 1.11
21 Use of single point mutations in domain I of beta 2-glycoprotein I to determine fine antigenic specificity of antiphospholipid autoantibodies. J Immunol 2002 1.08
22 Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets. Proteins 2006 1.05
23 Characterization of protein hubs by inferring interacting motifs from protein interactions. PLoS Comput Biol 2007 1.01
24 Target prediction for an open access set of compounds active against Mycobacterium tuberculosis. PLoS Comput Biol 2013 1.01
25 All-atom knowledge-based potential for RNA structure prediction and assessment. Bioinformatics 2011 1.00
26 A kernel for open source drug discovery in tropical diseases. PLoS Negl Trop Dis 2009 1.00
27 Genome structure determination via 3C-based data integration by the Integrative Modeling Platform. Methods 2012 0.99
28 Detecting remotely related proteins by their interactions and sequence similarity. Proc Natl Acad Sci U S A 2005 0.93
29 Impact of Fgd1 and ddn diversity in Mycobacterium tuberculosis complex on in vitro susceptibility to PA-824. Antimicrob Agents Chemother 2011 0.91
30 N-glycosylation efficiency is determined by the distance to the C-terminus and the amino acid preceding an Asn-Ser-Thr sequon. Protein Sci 2011 0.90
31 Prediction of enzyme function by combining sequence similarity and protein interactions. BMC Bioinformatics 2008 0.90
32 Quantifying the relationship between sequence and three-dimensional structure conservation in RNA. BMC Bioinformatics 2010 0.89
33 Localization of binding sites in protein structures by optimization of a composite scoring function. Protein Sci 2006 0.89
34 Structure-based statistical analysis of transmembrane helices. Eur Biophys J 2012 0.88
35 Protein translocation into peroxisomes by ring-shaped import receptors. FEBS Lett 2007 0.88
36 A kernel for the Tropical Disease Initiative. Nat Biotechnol 2009 0.87
37 A novel family of soluble minimal scaffolds provides structural insight into the catalytic domains of integral membrane metallopeptidases. J Biol Chem 2013 0.86
38 Polar/Ionizable residues in transmembrane segments: effects on helix-helix packing. PLoS One 2012 0.85
39 Membrane protein integration into the endoplasmic reticulum. FEBS J 2011 0.83
40 Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package. Bioinformatics 2013 0.82
41 Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs. Genome Biol 2008 0.81
42 ModLink+: improving fold recognition by using protein-protein interactions. Bioinformatics 2009 0.78