Translating microarray data for diagnostic testing in childhood leukaemia.

PubWeight™: 1.61‹?› | Rank: Top 4%

🔗 View Article (PMC 1609180)

Published in BMC Cancer on September 26, 2006

Authors

Katrin Hoffmann1, Martin J Firth, Alex H Beesley, Nicholas H de Klerk, Ursula R Kees

Author Affiliations

1: Division of Children's Leukaemia and Cancer Research, Telethon Institute for Child Health Research and Centre for Child Health Research, The University of Western Australia, Perth, Australia. katrinh@ichr.uwa.edu.au

Articles cited by this

Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics (2003) 100.88

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science (1999) 83.27

Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res (2003) 52.74

Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet (2005) 17.75

Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning. Nat Med (2002) 14.01

MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia. Nat Genet (2001) 13.79

Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell (2002) 11.83

Cytogenetics in acute leukemia. Blood Rev (2004) 9.99

Selection bias in gene extraction on the basis of microarray gene-expression data. Proc Natl Acad Sci U S A (2002) 9.83

Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J Natl Cancer Inst (2003) 9.68

Acute lymphoblastic leukemia. N Engl J Med (2004) 7.83

Gene expression signatures define novel oncogenic pathways in T cell acute lymphoblastic leukemia. Cancer Cell (2002) 6.64

Uniform approach to risk classification and treatment assignment for children with acute lymphoblastic leukemia. J Clin Oncol (1996) 5.09

Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. Blood (2003) 4.54

Getting the noise out of gene arrays. Science (2004) 3.91

Gene expression profiling of pediatric acute myelogenous leukemia. Blood (2004) 3.77

Expression profiling--best practices for data generation and interpretation in clinical trials. Nat Rev Genet (2004) 2.91

Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate? BMC Genomics (2005) 2.76

Prediction of clinical drug efficacy by classification of drug-induced genomic expression profiles in vitro. Proc Natl Acad Sci U S A (2003) 2.70

Recursive partitioning for tumor classification with gene expression microarray data. Proc Natl Acad Sci U S A (2001) 2.66

Prohibitin induces the transcriptional activity of p53 and is exported from the nucleus upon apoptotic signaling. J Biol Chem (2003) 2.52

Children's Cancer Group trials in childhood acute lymphoblastic leukemia: 1983-1995. Leukemia (2000) 2.48

Genomic approaches to hematologic malignancies. Blood (2004) 2.03

Cell and tumor classification using gene expression data: construction of forests. Proc Natl Acad Sci U S A (2003) 1.95

Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells. Nat Genet (2003) 1.79

Childhood leukaemia. BMJ (2002) 1.75

The gene expression signature of relapse in paediatric acute lymphoblastic leukaemia: implications for mechanisms of therapy failure. Br J Haematol (2005) 1.73

Identification of a gene expression signature associated with pediatric AML prognosis. Blood (2003) 1.71

Fifty years of studies of the biology and therapy of childhood leukemia. Blood (1997) 1.65

Oncogenic homeodomain transcription factor E2A-Pbx1 activates a novel WNT gene in pre-B acute lymphoblastoid leukemia. Proc Natl Acad Sci U S A (1999) 1.48

Cloning and characterization of a promoter flanking the early B cell factor (EBF) gene indicates roles for E-proteins and autoregulation in the control of EBF expression. J Immunol (2002) 1.20

Prediction of immunophenotype, treatment response, and relapse in childhood acute lymphoblastic leukemia using DNA microarrays. Leukemia (2004) 1.19

Identification of gene expression profiles that segregate patients with childhood leukemia. Clin Cancer Res (2002) 1.16

Two distinct gene expression signatures in pediatric acute lymphoblastic leukemia with MLL rearrangements. Cancer Res (2003) 1.16

Long-term results of treatment studies for childhood acute lymphoblastic leukemia: Pediatric Oncology Group studies from 1986-1994. Leukemia (2000) 1.15

Pediatric acute lymphoblastic leukemia. Hematology Am Soc Hematol Educ Program (2003) 1.13

Gene expression levels in small specimens from patients detected using oligonucleotide arrays. Mol Biotechnol (2005) 1.01

Molecular cytogenetics of childhood hematological malignancies. Leukemia (1997) 0.98

The detection and significance of chromosomal abnormalities in childhood acute lymphoblastic leukaemia. Blood Rev (2001) 0.95

Multi-class cancer subtype classification based on gene expression signatures with reliability analysis. FEBS Lett (2004) 0.93

The Leukaemia Research Fund/United Kingdom Cancer Cytogenetics Group Karyotype Database in acute lymphoblastic leukaemia: a valuable resource for patient management. Br J Haematol (2001) 0.92

Gene expression profiles in a panel of childhood leukemia cell lines mirror critical features of the disease. Mol Cancer Ther (2003) 0.86

Recent advances in the treatment and understanding of childhood acute lymphoblastic leukaemia. Cancer Treat Rev (2003) 0.85

Molecular diagnostics in the treatment of leukemia. Curr Opin Hematol (1999) 0.77

Articles by these authors

Early-life respiratory viral infections, atopic sensitization, and risk of subsequent development of persistent asthma. J Allergy Clin Immunol (2007) 4.54

Emergency department overcrowding, mortality and the 4-hour rule in Western Australia. Med J Aust (2012) 4.29

Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate? BMC Genomics (2005) 2.76

A decade of data linkage in Western Australia: strategic design, applications and benefits of the WA data linkage system. Aust Health Rev (2008) 2.71

Progression of early structural lung disease in young children with cystic fibrosis assessed using CT. Thorax (2011) 2.58

Patterns, trends, and increasing disparities in mortality for Aboriginal and non-Aboriginal infants born in Western Australia, 1980-2001: population database study. Lancet (2006) 2.49

Role of respiratory viruses in acute upper and lower respiratory tract illness in the first year of life: a birth cohort study. Pediatr Infect Dis J (2006) 2.44

Increasing incidence of malignant mesothelioma after exposure to asbestos during home maintenance and renovation. Med J Aust (2011) 2.30

Benefits of routine immunizations on childhood survival in Tari, Southern Highlands Province, Papua New Guinea. Int J Epidemiol (2004) 1.92

The long-term effects of breastfeeding on child and adolescent mental health: a pregnancy cohort study followed for 14 years. J Pediatr (2009) 1.90

The gene expression signature of relapse in paediatric acute lymphoblastic leukaemia: implications for mechanisms of therapy failure. Br J Haematol (2005) 1.73

Relapse in children with acute lymphoblastic leukemia involving selection of a preexisting drug-resistant subclone. Blood (2007) 1.72

Persistent effects of maternal smoking during pregnancy on lung function and asthma in adolescents. Am J Respir Crit Care Med (2014) 1.68

Genetic variants associated with increased risk of malignant pleural mesothelioma: a genome-wide association study. PLoS One (2013) 1.55

Hepatic iron loading in mice increases cholesterol biosynthesis. Hepatology (2010) 1.53

Divergent mechanisms of glucocorticoid resistance in experimental models of pediatric acute lymphoblastic leukemia. Cancer Res (2007) 1.40

Alarm about computed tomography scans is unjustified. Med J Aust (2010) 1.39

Increased frequency of aberrations in the p53/MDM2/p14(ARF) pathway in neuroblastoma cell lines established at relapse. Cancer Res (2006) 1.36

Optimal fetal growth for the Caucasian singleton and assessment of appropriateness of fetal growth: an analysis of a total population perinatal database. BMC Pediatr (2005) 1.30

Pre- and postnatal influences on preschool mental health: a large-scale cohort study. J Child Psychol Psychiatry (2008) 1.23

Parental prenatal smoking and risk of childhood acute lymphoblastic leukemia. Am J Epidemiol (2011) 1.19

The association between dietary patterns and mental health in early adolescence. Prev Med (2009) 1.16

Lifecourse childhood adiposity trajectories associated with adolescent insulin resistance. Diabetes Care (2011) 1.14

FusionFinder: a software tool to identify expressed gene fusion candidates from RNA-Seq data. PLoS One (2012) 1.11

Serum mesothelin for early detection of asbestos-induced cancer malignant mesothelioma. Cancer Epidemiol Biomarkers Prev (2010) 1.10

The role of MYCN in the failure of MYCN amplified neuroblastoma cell lines to G1 arrest after DNA damage. Cell Cycle (2006) 1.08

Maternal asthma, infant feeding, and the risk of asthma in childhood. J Allergy Clin Immunol (2002) 1.07

Identification of novel Th2-associated genes in T memory responses to allergens. J Immunol (2006) 1.06

Interactions between acute lymphoblastic leukemia and bone marrow stromal cells influence response to therapy. Leuk Res (2011) 1.05

The reliability of ten-year dietary recall: implications for cancer research. J Nutr (2003) 1.02

Mechanism of relapse in pediatric acute lymphoblastic leukemia. Cell Cycle (2008) 1.01

Gene expression levels in small specimens from patients detected using oligonucleotide arrays. Mol Biotechnol (2005) 1.01

Cell lines from MYCN transgenic murine tumours reflect the molecular and biological characteristics of human neuroblastoma. Eur J Cancer (2007) 1.00

The relation of breastfeeding and body mass index to asthma and atopy in children: a prospective cohort study to age 6 years. Am J Public Health (2004) 1.00

Validation of a mouse xenograft model system for gene expression analysis of human acute lymphoblastic leukaemia. BMC Genomics (2010) 0.99

Sudden infant death syndrome and unascertainable deaths: trends and disparities among Aboriginal and non-Aboriginal infants born in Western Australia from 1980 to 2001 inclusive. J Paediatr Child Health (2006) 0.99

Maternal folate and other vitamin supplementation during pregnancy and risk of acute lymphoblastic leukemia in the offspring. Int J Cancer (2010) 0.98

A network modeling approach to analysis of the Th2 memory responses underlying human atopic disease. J Immunol (2009) 0.98

Relative validity of adolescent dietary patterns: a comparison of a FFQ and 3 d food record. Br J Nutr (2011) 0.95

High expression of connective tissue growth factor in pre-B acute lymphoblastic leukaemia. Br J Haematol (2007) 0.95

Germ-line and somatic DICER1 mutations in pineoblastoma. Acta Neuropathol (2014) 0.95

Silencing of TESTIN by dense biallelic promoter methylation is the most common molecular event in childhood acute lymphoblastic leukaemia. Mol Cancer (2010) 0.92

Respiratory symptoms and lung-function changes with exposure to five substances in aluminium smelters. Int Arch Occup Environ Health (2003) 0.91

Prediction of relapse in paediatric pre-B acute lymphoblastic leukaemia using a three-gene risk index. Br J Haematol (2008) 0.90

Maternal use of folic acid and other supplements and risk of childhood brain tumors. Cancer Epidemiol Biomarkers Prev (2012) 0.89

Gene-based outcome prediction in multiple cohorts of pediatric T-cell acute lymphoblastic leukemia: a Children's Oncology Group study. Mol Cancer (2010) 0.89

Distribution of early structural lung changes due to cystic fibrosis detected with chest computed tomography. J Pediatr (2013) 0.89

Is there a folate-related gene-environment interaction in the etiology of childhood acute lymphoblastic leukemia? Int J Cancer (2006) 0.87

Receptor mutation is not a common mechanism of naturally occurring glucocorticoid resistance in leukaemia cell lines. Leuk Res (2008) 0.87

Identification of novel molecular prognostic markers for paediatric T-cell acute lymphoblastic leukaemia. Br J Haematol (2007) 0.87

Assessment of early bronchiectasis in young children with cystic fibrosis is dependent on lung volume. Chest (2013) 0.87

In vitro cytotoxicity of nelarabine, clofarabine and flavopiridol in paediatric acute lymphoblastic leukaemia. Br J Haematol (2007) 0.86

Lung function, bronchial responsiveness, and asthma in a community cohort of 6-year-old children. Am J Respir Crit Care Med (2004) 0.86

Epidemiology of malignant mesothelioma in Australia. Lung Cancer (2004) 0.86

Exposure to pesticides and the risk of childhood brain tumors. Cancer Causes Control (2013) 0.85

Gynecologic and breast cancers in women after exposure to blue asbestos at Wittenoom. Cancer Epidemiol Biomarkers Prev (2009) 0.85

MEIS proteins as partners of the TLX1/HOX11 oncoprotein. Leuk Res (2009) 0.85

Atopy, eczema and breast milk fatty acids in a high-risk cohort of children followed from birth to 5 yr. Pediatr Allergy Immunol (2006) 0.84

Transcriptional regulation of FHL1 by TLX1/HOX11 is dosage, cell-type and promoter context-dependent. Biochem Biophys Res Commun (2007) 0.84

Classification and regression tree and spatial analyses reveal geographic heterogeneity in genome wide linkage study of Indian visceral leishmaniasis. PLoS One (2010) 0.84

Exposure to professional pest control treatments and the risk of childhood acute lymphoblastic leukemia. Int J Cancer (2011) 0.83

The diphtheria toxin/urokinase fusion protein (DTAT) is selectively toxic to CD87 expressing leukemic cells. Leuk Res (2003) 0.83

A promoter with bidirectional activity is located between TLX1/HOX11 and a divergently transcribed novel human gene. Gene (2007) 0.83

A microarray model system identifies potential new target genes of the proto-oncogene HOX11. Genes Chromosomes Cancer (2004) 0.82

Overexpression of stem cell associated ALDH1A1, a target of the leukemogenic transcription factor TLX1/HOX11, inhibits lymphopoiesis and promotes myelopoiesis in murine hematopoietic progenitors. Leuk Res (2007) 0.82

Parental alcohol consumption and risk of childhood acute lymphoblastic leukemia and brain tumors. Cancer Causes Control (2012) 0.82

Parental smoking and risk of childhood brain tumors. Int J Cancer (2013) 0.82

Regions syntenic to human 17q are gained in mouse and rat neuroblastoma. Genes Chromosomes Cancer (2004) 0.82

TLX1/HOX11 transcription factor inhibits differentiation and promotes a non-haemopoietic phenotype in murine bone marrow cells. Br J Haematol (2007) 0.81

Exposure to household painting and floor treatments, and parental occupational paint exposure and risk of childhood brain tumors: results from an Australian case-control study. Cancer Causes Control (2013) 0.81

Dietary patterns and surgically treated benign prostatic hyperplasia: a case control study in Western Australia. BJU Int (2007) 0.81

Dietary intake of omega-3 fatty acids and risk of depressive symptoms in adolescents. Depress Anxiety (2011) 0.81

Drug-gene modeling in pediatric T-cell acute lymphoblastic leukemia highlights importance of 6-mercaptopurine for outcome. Cancer Res (2013) 0.81

Hypomethylation of the CTGF gene locus is a common feature of paediatric pre-B acute lymphoblastic leukaemia. Br J Haematol (2013) 0.81