Published in Bioinformatics on November 07, 2006
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Expansion of biological pathways based on evolutionary inference. Cell (2014) 1.52
Biomedical discovery acceleration, with applications to craniofacial development. PLoS Comput Biol (2009) 1.49
On simulated annealing phase transitions in phylogeny reconstruction. Mol Phylogenet Evol (2016) 1.33
An improved method for identifying functionally linked proteins using phylogenetic profiles. BMC Bioinformatics (2007) 1.32
Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution. J R Soc Interface (2008) 1.24
Reconstructing ancestral gene content by coevolution. Genome Res (2009) 1.04
Coevolution of gene families in prokaryotes. Genome Res (2008) 1.02
ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. BMC Bioinformatics (2011) 1.00
Organ and cell type-specific complementary expression patterns and regulatory neofunctionalization between duplicated genes in Arabidopsis thaliana. Genome Biol Evol (2011) 1.00
A systematic study of genome context methods: calibration, normalization and combination. BMC Bioinformatics (2010) 0.98
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. BMC Bioinformatics (2009) 0.95
High similarity of phylogenetic profiles of rate-limiting enzymes with inhibitory relation in Human, Mouse, Rat, budding Yeast and E. coli. BMC Genomics (2011) 0.93
Gain and loss of elongation factor genes in green algae. BMC Evol Biol (2009) 0.91
Uncovering the co-evolutionary network among prokaryotic genes. Bioinformatics (2012) 0.90
Evolutionary trends of the pharyngeal dentition in Cypriniformes (Actinopterygii: Ostariophysi). PLoS One (2010) 0.89
Correlation between the green-island phenotype and Wolbachia infections during the evolutionary diversification of Gracillariidae leaf-mining moths. Ecol Evol (2015) 0.84
Systematic Discovery of Human Gene Function and Principles of Modular Organization through Phylogenetic Profiling. Cell Rep (2015) 0.83
Large-scale analysis of microRNA evolution. BMC Genomics (2012) 0.81
Genome-scale co-evolutionary inference identifies functions and clients of bacterial Hsp90. PLoS Genet (2013) 0.81
CoPAP: Coevolution of presence-absence patterns. Nucleic Acids Res (2013) 0.80
Detecting Coevolution of Functionally Related Proteins for Automated Protein Annotation. Proc IEEE Int Symp Bioinformatics Bioeng (2010) 0.79
Role of the host restriction factor APOBEC3 on papillomavirus evolution. Virus Evol (2015) 0.79
D-PLACE: A Global Database of Cultural, Linguistic and Environmental Diversity. PLoS One (2016) 0.77
Simultaneously estimating evolutionary history and repeated traits phylogenetic signal: applications to viral and host phenotypic evolution. Methods Ecol Evol (2015) 0.76
Discovering local patterns of co-evolution: computational aspects and biological examples. BMC Bioinformatics (2010) 0.76
Rates of morphological evolution in Captorhinidae: an adaptive radiation of Permian herbivores. PeerJ (2017) 0.75
Bayesian estimation of ancestral character states on phylogenies. Syst Biol (2004) 7.09
Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am Nat (2006) 6.10
On the regulation of populations of mammals, birds, fish, and insects. Science (2005) 5.93
Frequency of word-use predicts rates of lexical evolution throughout Indo-European history. Nature (2007) 4.96
A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Syst Biol (2004) 3.66
Languages evolve in punctuational bursts. Science (2008) 3.15
Molecular phylogenies link rates of evolution and speciation. Science (2003) 2.64
Phylogenies reveal new interpretation of speciation and the Red Queen. Nature (2009) 2.52
Origin of avian genome size and structure in non-avian dinosaurs. Nature (2007) 2.20
Predicting functional gene links from phylogenetic-statistical analyses of whole genomes. PLoS Comput Biol (2005) 2.17
The cultural wealth of nations. Nature (2004) 2.12
Comparative biology of mammalian telomeres: hypotheses on ancestral states and the roles of telomeres in longevity determination. Aging Cell (2011) 2.07
Large punctuational contribution of speciation to evolutionary divergence at the molecular level. Science (2006) 1.92
Ultraconserved words point to deep language ancestry across Eurasia. Proc Natl Acad Sci U S A (2013) 1.89
Multiple routes to mammalian diversity. Nature (2011) 1.60
Bergmann's rule and body size in mammals. Am Nat (2003) 1.59
Cultural phylogeography of the Bantu Languages of sub-Saharan Africa. Proc Biol Sci (2013) 1.35
Do variations in substitution rates and male mutation bias correlate with life-history traits? A study of 32 mammalian genomes. Evolution (2011) 1.25
Detecting the node-density artifact in phylogeny reconstruction. Syst Biol (2006) 1.25
Genotypic sex determination enabled adaptive radiations of extinct marine reptiles. Nature (2009) 1.20
How do we use language? Shared patterns in the frequency of word use across 17 world languages. Philos Trans R Soc Lond B Biol Sci (2011) 1.18
Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes. BMC Evol Biol (2007) 1.16
Speciation as an active force in promoting genetic evolution. Trends Ecol Evol (2009) 1.16
On the stability of populations of mammals, birds, fish and insects. Ecol Lett (2007) 1.13
Evolutionary shifts between host oak sections and host-plant organs in Andricus gallwasps. Evolution (2002) 1.13
Evolutionary divergence in brain size between migratory and resident birds. PLoS One (2010) 1.09
Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo. Philos Trans R Soc Lond B Biol Sci (2008) 1.08
Phylogenetic mixture models can reduce node-density artifacts. Syst Biol (2008) 1.07
Relating traits to diversification: a simple test. Am Nat (2008) 0.94
The structure of interrupted human AC microsatellites. Mol Biol Evol (2003) 0.90
The slow road to the eukaryotic genome. Bioessays (2006) 0.83
Model misspecification not the node-density artifact. Evolution (2008) 0.80
Evolutionary biology: Birds of a feather. Nature (2012) 0.79
Feasibility of selective nanoparticle-assisted photothermal treatment for an embedded liver tumor. Lasers Med Sci (2012) 0.79
Numerical investigation of nanoparticle-assisted laser-induced interstitial thermotherapy toward tumor and cancer treatments. Lasers Med Sci (2010) 0.78
Evolutionary biology: polygamy and parenting. Nature (2003) 0.77
Linguistic evidence supports date for Homeric epics. Bioessays (2013) 0.77
Reply to Mahowald and Gibson and to Heggarty: No problems with short words, and no evidence provided. Proc Natl Acad Sci U S A (2013) 0.75
Excellence in stroke care: improving care in community hospitals. Hosp Health Netw (2012) 0.75
Evolution, bioinformatics and evolutionary bioinformatics online. Evol Bioinform Online (2007) 0.75