Published in J Exp Zool B Mol Dev Evol on January 15, 2007
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet (2011) 2.54
Complexity, connectivity, and duplicability as barriers to lateral gene transfer. Genome Biol (2007) 1.13
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Loss of genetic redundancy in reductive genome evolution. PLoS Comput Biol (2011) 0.94
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Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res (2005) 2.89
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. J Bacteriol (2008) 2.71
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Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet (2011) 2.54
The nature and dynamics of bacterial genomes. Science (2006) 2.47
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The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet (2011) 2.01
Causes of insertion sequences abundance in prokaryotic genomes. Mol Biol Evol (2007) 1.98
Uneven chromosome contraction and expansion in the maize genome. Genome Res (2006) 1.96
The systemic imprint of growth and its uses in ecological (meta)genomics. PLoS Genet (2010) 1.94
The small, slow and specialized CRISPR and anti-CRISPR of Escherichia and Salmonella. PLoS One (2010) 1.84
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The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes. PLoS One (2011) 1.47
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Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. PLoS Genet (2006) 1.40
After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection. Genome Res (2012) 1.38
Persistence drives gene clustering in bacterial genomes. BMC Genomics (2008) 1.37
The temporal dynamics of slightly deleterious mutations in Escherichia coli and Shigella spp. Mol Biol Evol (2008) 1.35
Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction. Genome Res (2007) 1.34
The impact of the neisserial DNA uptake sequences on genome evolution and stability. Genome Biol (2008) 1.31
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A DNA 3' phosphatase functions in active DNA demethylation in Arabidopsis. Mol Cell (2012) 1.17
Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes. BMC Plant Biol (2011) 1.16
Evolution of conjugation and type IV secretion systems. Mol Biol Evol (2012) 1.14
The adaptation of temperate bacteriophages to their host genomes. Mol Biol Evol (2012) 1.13
Complete genome sequence of the fish pathogen Flavobacterium branchiophilum. Appl Environ Microbiol (2011) 1.12
Arabidopsis proline-rich protein important for development and abiotic stress tolerance is involved in microRNA biogenesis. Proc Natl Acad Sci U S A (2012) 1.10
Transcriptome analysis of medicinal plant Salvia miltiorrhiza and identification of genes related to tanshinone biosynthesis. PLoS One (2013) 1.08
Swelfe: a detector of internal repeats in sequences and structures. Bioinformatics (2008) 1.06
The unusually large Plasmodium telomerase reverse-transcriptase localizes in a discrete compartment associated with the nucleolus. Nucleic Acids Res (2005) 1.06
The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis. EMBO J (2013) 1.04
High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice. BMC Plant Biol (2012) 1.01
A DEAD box RNA helicase is critical for pre-mRNA splicing, cold-responsive gene regulation, and cold tolerance in Arabidopsis. Plant Cell (2013) 1.00
Transcription repressor HANABA TARANU controls flower development by integrating the actions of multiple hormones, floral organ specification genes, and GATA3 family genes in Arabidopsis. Plant Cell (2013) 1.00
Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns. Proc Natl Acad Sci U S A (2013) 1.00
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Protein evolution: causes of trends in amino-acid gain and loss. Nature (2006) 0.97
From GC skews to wavelets: a gentle guide to the analysis of compositional asymmetries in genomic data. Biochimie (2007) 0.97
Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm. BMC Bioinformatics (2008) 0.95
Immune subversion and quorum-sensing shape the variation in infectious dose among bacterial pathogens. PLoS Pathog (2012) 0.94
Exploring microbial microevolution with microarrays. Infect Genet Evol (2005) 0.93
Antibiotic resistance plasmids spread among natural isolates of Escherichia coli in spite of CRISPR elements. Microbiology (2012) 0.92
A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis. PLoS Genet (2013) 0.91
Maize LAZY1 mediates shoot gravitropism and inflorescence development through regulating auxin transport, auxin signaling, and light response. Plant Physiol (2013) 0.91
Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing. Planta (2012) 0.90
An assessment of the impacts of molecular oxygen on the evolution of proteomes. Mol Biol Evol (2008) 0.90
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No evidence for elemental-based streamlining of prokaryotic genomes. Trends Ecol Evol (2010) 0.88
Genome-wide analysis of DNA repeats in Burkholderia cenocepacia J2315 identifies a novel adhesin-like gene unique to epidemic-associated strains of the ET-12 lineage. Microbiology (2009) 0.86
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Manipulating or superseding host recombination functions: a dilemma that shapes phage evolvability. PLoS Genet (2013) 0.84
Characterization of novel phages isolated in coagulase-negative staphylococci reveals evolutionary relationships with Staphylococcus aureus phages. J Bacteriol (2012) 0.83
A three-year follow-up study of the psychosocial predictors of delayed and unresolved post-traumatic stress disorder in Taiwan Chi-Chi earthquake survivors. Psychiatry Clin Neurosci (2010) 0.83
Rapid evolution of the sequences and gene repertoires of secreted proteins in bacteria. PLoS One (2012) 0.83
Cytosine methylation is not the major factor inducing CpG dinucleotide deficiency in bacterial genomes. J Mol Evol (2004) 0.82
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Investment in rapid growth shapes the evolutionary rates of essential proteins. Proc Natl Acad Sci U S A (2011) 0.80
Proteomic analysis revealed nitrogen-mediated metabolic, developmental, and hormonal regulation of maize (Zea mays L.) ear growth. J Exp Bot (2012) 0.80
Function-specific accelerations in rates of sequence evolution suggest predictable epistatic responses to reduced effective population size. Mol Biol Evol (2011) 0.80
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Comparative expression profiling reveals gene functions in female meiosis and gametophyte development in Arabidopsis. Plant J (2014) 0.79
The unique evolution of the programmed cell death 4 protein in plants. BMC Evol Biol (2013) 0.78
A Single Amino Acid Substitution Changes the Self-Assembly Status of a Type IV Piliation Secretin. J Bacteriol (2012) 0.78
Enchilada redux: how complete is your genome sequence? New Phytol (2008) 0.77
Nitrogen under- and over-supply induces distinct protein responses in maize xylem sap. J Integr Plant Biol (2012) 0.76
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A comparison of quality of life and depression between female married immigrants and native married women in Taiwan. Soc Psychiatry Psychiatr Epidemiol (2010) 0.75
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Corrigendum: Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection. Sci Rep (2016) 0.75