Published in Structure on January 01, 2007
DNA poised for release in bacteriophage phi29. Structure (2008) 2.29
Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29. Proc Natl Acad Sci U S A (2007) 1.99
Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations. J Mol Biol (2007) 1.89
Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29. Biophys J (2007) 1.68
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Packaging double-helical DNA into viral capsids: structures, forces, and energetics. Biophys J (2008) 1.37
Ionic current blockades from DNA and RNA molecules in the alpha-hemolysin nanopore. Biophys J (2007) 1.37
The conformation of double-stranded DNA inside bacteriophages depends on capsid size and shape. J Struct Biol (2007) 1.28
Effects of salt concentrations and bending energy on the extent of ejection of phage genomes. Biophys J (2007) 1.26
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Electrostatic regulation of genome packaging in human hepatitis B virus. Biophys J (2009) 0.97
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Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage Phi29. Phys Rev Lett (2014) 0.93
Visualization of bacteriophage T3 capsids with DNA incompletely packaged in vivo. J Mol Biol (2008) 0.92
The entropic cost of polymer confinement. J Phys Chem B (2012) 0.92
DNA ejection from bacteriophage: towards a general behavior for osmotic-suppression experiments. Eur Phys J E Soft Matter (2007) 0.92
The role of DNA twist in the packaging of viral genomes. Biophys J (2008) 0.91
Assembly mechanism of the sixty-subunit nanoparticles via interaction of RNA with the reengineered protein connector of phi29 DNA-packaging motor. ACS Nano (2010) 0.91
Nucleic acid packaging in viruses. Curr Opin Struct Biol (2012) 0.91
DNA packaging-associated hyper-capsid expansion of bacteriophage t3. J Mol Biol (2010) 0.88
Communication: Origin of the contributions to DNA structure in phages. J Chem Phys (2013) 0.86
Ion-dependent dynamics of DNA ejections for bacteriophage lambda. Biophys J (2010) 0.86
Effect of capsid confinement on the chromatin organization of the SV40 minichromosome. Nucleic Acids Res (2012) 0.83
A coarse-grain three-site-per-nucleotide model for DNA with explicit ions. J Chem Phys (2011) 0.83
A theoretical model for the dynamic structure of hepatitis B nucleocapsid. Biophys J (2011) 0.82
Effects of pulling forces, osmotic pressure, condensing agents and viscosity on the thermodynamics and kinetics of DNA ejection from bacteriophages to bacterial cells: a computational study. J Phys Condens Matter (2013) 0.81
Comment on the letter by A. Ben-Shaul: "entropy, energy, and bending of DNA in viral capsids". Biophys J (2014) 0.80
Polymorphism of DNA conformation inside the bacteriophage capsid. J Biol Phys (2013) 0.80
Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA. Biophys J (2015) 0.79
Twist-induced defects of the P-SSP7 genome revealed by modeling the cryo-EM density. J Phys Chem B (2015) 0.78
The XXIIIrd Phage/Virus Assembly Meeting. Bacteriophage (2014) 0.77
A Thermodynamic Model for Genome Packaging in Hepatitis B Virus. Biophys J (2015) 0.76
Effect of molecular crowding and ionic strength on the isothermal hybridization of oligonucleotides. J Phys Chem B (2010) 0.76
DNA Scrunching in the Packaging of Viral Genomes. J Phys Chem B (2016) 0.75
A Molecular View of the Dynamics of dsDNA Packing Inside Viral Capsids in the Presence of Ions. Biophys J (2017) 0.75
RNAML: a standard syntax for exchanging RNA information. RNA (2002) 5.34
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nat Struct Biol (2003) 3.77
The RNA Ontology Consortium: an open invitation to the RNA community. RNA (2006) 3.60
Study of the structural dynamics of the E coli 70S ribosome using real-space refinement. Cell (2003) 3.03
Investigation of viral DNA packaging using molecular mechanics models. Biophys Chem (2002) 1.65
Modeling a minimal ribosome based on comparative sequence analysis. J Mol Biol (2002) 1.58
A structural model for the large subunit of the mammalian mitochondrial ribosome. J Mol Biol (2006) 1.46
Novel changes in discoidal high density lipoprotein morphology: a molecular dynamics study. Biophys J (2006) 1.39
Packaging double-helical DNA into viral capsids: structures, forces, and energetics. Biophys J (2008) 1.37
Double belt structure of discoidal high density lipoproteins: molecular basis for size heterogeneity. J Mol Biol (2004) 1.36
Nodavirus coat protein imposes dodecahedral RNA structure independent of nucleotide sequence and length. J Virol (2004) 1.35
The conformation of double-stranded DNA inside bacteriophages depends on capsid size and shape. J Struct Biol (2007) 1.28
YUP: A Molecular Simulation Program for Coarse-Grained and Multi-Scaled Models. J Chem Theory Comput (2006) 1.27
Packaging of DNA by bacteriophage epsilon15: structure, forces, and thermodynamics. Structure (2007) 1.26
Packaging double-helical DNA into viral capsids. Biopolymers (2004) 1.22
Secondary structure and domain architecture of the 23S and 5S rRNAs. Nucleic Acids Res (2013) 1.17
Structural and electrostatic characterization of pariacoto virus: implications for viral assembly. Biopolymers (2009) 1.15
A structural model for the assembly of the 30S subunit of the ribosome. J Mol Biol (2003) 1.14
DNA organization and thermodynamics during viral packing. Biophys J (2007) 1.09
Molecular dynamics simulations on discoidal HDL particles suggest a mechanism for rotation in the apo A-I belt model. J Mol Biol (2002) 1.07
YUP.SCX: coaxing atomic models into medium resolution electron density maps. J Struct Biol (2008) 1.06
RNA folding and catalysis mediated by iron (II). PLoS One (2012) 1.05
GTfold: enabling parallel RNA secondary structure prediction on multi-core desktops. BMC Res Notes (2012) 1.05
Identification of the proteoglycan binding site in apolipoprotein B48. J Biol Chem (2002) 1.04
Assembly of lipoprotein particles containing apolipoprotein-B: structural model for the nascent lipoprotein particle. Biophys J (2005) 1.00
Comparative models for human apolipoprotein A-I bound to lipid in discoidal high-density lipoprotein particles. Biochemistry (2002) 0.99
Molecular dynamics simulations of forced unbending of integrin α(v)β₃. PLoS Comput Biol (2011) 0.95
Bidentate RNA-magnesium clamps: on the origin of the special role of magnesium in RNA folding. RNA (2010) 0.95
Role of DNA-DNA interactions on the structure and thermodynamics of bacteriophages Lambda and P4. J Struct Biol (2010) 0.94
A model for the structure of satellite tobacco mosaic virus. J Struct Biol (2012) 0.94
The entropic cost of polymer confinement. J Phys Chem B (2012) 0.92
Probing the importance of tRNA anticodon: human immunodeficiency virus type 1 (HIV-1) RNA genome complementarity with an HIV-1 that selects tRNA(Glu) for replication. J Virol (2003) 0.92
Modeling the conformational changes underlying channel opening in CFTR. PLoS One (2013) 0.92
The role of DNA twist in the packaging of viral genomes. Biophys J (2008) 0.91
RiboVision suite for visualization and analysis of ribosomes. Faraday Discuss (2014) 0.90
In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus. PLoS One (2013) 0.87
Biophysical and ultrastructural characterization of adeno-associated virus capsid uncoating and genome release. J Virol (2012) 0.87
Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state. RNA (2012) 0.87
Integration host factor (IHF) dictates the structure of polyamine-DNA condensates: implications for the role of IHF in the compaction of bacterial chromatin. Biochemistry (2009) 0.86
RNA with iron(II) as a cofactor catalyses electron transfer. Nat Chem (2013) 0.86
DNA-directed assembly of polyanilines: modified cytosine nucleotides transfer sequence programmability to a conjoined polymer. J Am Chem Soc (2006) 0.85
Molecular paleontology: a biochemical model of the ancestral ribosome. Nucleic Acids Res (2013) 0.84
Characterization of DNA conformation inside bacterial viruses. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.83
RNA-magnesium-protein interactions in large ribosomal subunit. J Phys Chem B (2012) 0.82
Relating the disease mutation spectrum to the evolution of the cystic fibrosis transmembrane conductance regulator (CFTR). PLoS One (2012) 0.81
Effects of pulling forces, osmotic pressure, condensing agents and viscosity on the thermodynamics and kinetics of DNA ejection from bacteriophages to bacterial cells: a computational study. J Phys Condens Matter (2013) 0.81
The calcium-saturated cTnI/cTnC complex: structure of the inhibitory region of cTnI. Biophys J (2003) 0.78
Computational screening and design of DNA-linked molecular nanowires. Nano Lett (2010) 0.77
Exploring the flexibility of ribosome recycling factor using molecular dynamics. Biophys J (2005) 0.77
Problems with the transorientation hypothesis. RNA (2002) 0.75