Published in Microbiology on February 01, 2007
Experimental determination of translational start sites resolves uncertainties in genomic open reading frame predictions - application to Mycobacterium tuberculosis. Microbiology (2009) 1.85
Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry. Mol Cell Proteomics (2011) 1.58
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example. BMC Genomics (2008) 1.20
Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger. BMC Genomics (2009) 0.97
Leveraging the complementary nature of RNA-Seq and shotgun proteomics data. Proteomics (2014) 0.84
Analysis of the secretome and identification of novel constituents from culture filtrate of bacillus Calmette-Guerin using high-resolution mass spectrometry. Mol Cell Proteomics (2013) 0.82
An intragenic distribution bias of DNA uptake sequences in Pasteurellaceae and Neisseriae. Biol Direct (2008) 0.80
Reannotation of translational start sites in the genome of Mycobacterium tuberculosis. Tuberculosis (Edinb) (2012) 0.80
A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF. BMC Genomics (2011) 0.79
Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry. Clin Proteomics (2014) 0.79
Biochemical evidence for relaxed substrate specificity of Nα-acetyltransferase (Rv3420c/rimI) of Mycobacterium tuberculosis. Sci Rep (2016) 0.76
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature (1998) 60.62
Improved prediction of signal peptides: SignalP 3.0. J Mol Biol (2004) 48.40
Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis (1997) 6.82
Operons in Escherichia coli: genomic analyses and predictions. Proc Natl Acad Sci U S A (2000) 5.79
Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv. Microbiology (2002) 5.17
N-terminal acetyltransferases and sequence requirements for N-terminal acetylation of eukaryotic proteins. J Mol Biol (2003) 3.87
Initiation of protein synthesis in bacteria. Microbiol Mol Biol Rev (2005) 3.78
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags. Proc Natl Acad Sci U S A (2002) 3.15
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. Nat Biotechnol (2003) 3.10
Proteogenomic mapping as a complementary method to perform genome annotation. Proteomics (2004) 2.76
The diversity of acetylated proteins. Genome Biol (2002) 2.40
Comparative proteome analysis of Mycobacterium tuberculosis and Mycobacterium bovis BCG strains: towards functional genomics of microbial pathogens. Mol Microbiol (1999) 2.28
Genome annotation past, present, and future: how to define an ORF at each locus. Genome Res (2005) 2.11
Structures of N-terminally acetylated proteins. Eur J Biochem (1985) 1.92
Comparative proteome analysis of Helicobacter pylori. Mol Microbiol (2000) 1.73
Analysis of changes in acute-phase plasma proteins in an acute inflammatory response and in rheumatoid arthritis using two-dimensional gel electrophoresis. Electrophoresis (1998) 1.37
Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics. Infect Immun (2001) 1.34
CFP10 discriminates between nonacetylated and acetylated ESAT-6 of Mycobacterium tuberculosis by differential interaction. Proteomics (2004) 1.32
The dominance of arginine-containing peptides in MALDI-derived tryptic mass fingerprints of proteins. Anal Chem (1999) 1.30
Complementary analysis of the Mycobacterium tuberculosis proteome by two-dimensional electrophoresis and isotope-coded affinity tag technology. Mol Cell Proteomics (2003) 1.29
In silico proteome analysis to facilitate proteomics experiments using mass spectrometry. Proteome Sci (2003) 1.24
A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context. Nucleic Acids Res (2005) 1.18
Fructose-1,6-bisphosphatase from Corynebacterium glutamicum: expression and deletion of the fbp gene and biochemical characterization of the enzyme. Arch Microbiol (2003) 1.15
The Mycobacterium tuberculosis Rv1099c gene encodes a GlpX-like class II fructose 1,6-bisphosphatase. Microbiology (2004) 1.01
Matrix-assisted laser desorption-ionization mass spectrometry peptide mass fingerprinting for proteome analysis: identification efficiency after on-blot or in-gel digestion with and without desalting procedures. J Chromatogr B Biomed Sci Appl (2001) 0.94
Distinctive mass losses of tryptic peptides generated by matrix-assisted laser desorption/ionization time-of-flight/time-of-flight. Rapid Commun Mass Spectrom (2006) 0.92
Neutrophil extracellular traps contain calprotectin, a cytosolic protein complex involved in host defense against Candida albicans. PLoS Pathog (2009) 5.40
Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42. Nat Biotechnol (2007) 4.66
Deletion of two-component regulatory systems increases the virulence of Mycobacterium tuberculosis. Infect Immun (2003) 2.79
A highly conserved transcriptional repressor controls a large regulon involved in lipid degradation in Mycobacterium smegmatis and Mycobacterium tuberculosis. Mol Microbiol (2007) 2.13
Probing host pathogen cross-talk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophages. PLoS One (2008) 1.91
From the inside out--processing of the Chlamydial autotransporter PmpD and its role in bacterial adhesion and activation of human host cells. Mol Microbiol (2004) 1.78
Identification of surface proteins of Helicobacter pylori by selective biotinylation, affinity purification, and two-dimensional gel electrophoresis. J Biol Chem (2002) 1.76
Finding one's way in proteomics: a protein species nomenclature. Chem Cent J (2009) 1.75
Evaluation of vaccines in the EU TB Vaccine Cluster using a guinea pig aerosol infection model of tuberculosis. Tuberculosis (Edinb) (2005) 1.73
Analysis of whole-genome microarray replicates using mixed models. Bioinformatics (2003) 1.73
Proteome analysis of secreted proteins of the gastric pathogen Helicobacter pylori. Infect Immun (2002) 1.70
Immunoproteomics of Helicobacter pylori infection and relation to gastric disease. Proteomics (2002) 1.63
The senX3-regX3 two-component regulatory system of Mycobacterium tuberculosis is required for virulence. Microbiology (2003) 1.62
A GAF domain in the hypoxia/NO-inducible Mycobacterium tuberculosis DosS protein binds haem. J Mol Biol (2005) 1.61
The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosis. Tuberculosis (Edinb) (2004) 1.58
Comparative proteome analysis of culture supernatant proteins from virulent Mycobacterium tuberculosis H37Rv and attenuated M. bovis BCG Copenhagen. Electrophoresis (2003) 1.57
The common aromatic amino acid biosynthesis pathway is essential in Mycobacterium tuberculosis. Microbiology (2002) 1.57
The RD1 proteins of Mycobacterium tuberculosis: expression in Mycobacterium smegmatis and biochemical characterization. Microbes Infect (2003) 1.45
What do microarrays really tell us about M. tuberculosis? Trends Microbiol (2004) 1.40
Deletion of the Mycobacterium tuberculosis alpha-crystallin-like hspX gene causes increased bacterial growth in vivo. Infect Immun (2006) 1.38
Cholesterol utilization in mycobacteria is controlled by two TetR-type transcriptional regulators: kstR and kstR2. Microbiology (2010) 1.36
The Mycobacterium tuberculosis ino1 gene is essential for growth and virulence. Mol Microbiol (2004) 1.34
CFP10 discriminates between nonacetylated and acetylated ESAT-6 of Mycobacterium tuberculosis by differential interaction. Proteomics (2004) 1.32
Application of mycobacterial proteomics to vaccine design: improved protection by Mycobacterium bovis BCG prime-Rv3407 DNA boost vaccination against tuberculosis. Infect Immun (2004) 1.30
Complementary analysis of the Mycobacterium tuberculosis proteome by two-dimensional electrophoresis and isotope-coded affinity tag technology. Mol Cell Proteomics (2003) 1.29
Proteomic identification of secreted proteins of Propionibacterium acnes. BMC Microbiol (2010) 1.28
Intermediate-type 20 S proteasomes in HeLa cells: "asymmetric" subunit composition, diversity and adaptation. J Mol Biol (2007) 1.27
Screening of highly expressed mycobacterial genes identifies Rv3615c as a useful differential diagnostic antigen for the Mycobacterium tuberculosis complex. Infect Immun (2008) 1.27
Identification of specific proteins and peptides in Mycobacterium leprae suitable for the selective diagnosis of leprosy. J Immunol (2005) 1.24
Peptide mass fingerprinting. Methods (2005) 1.24
A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context. Nucleic Acids Res (2005) 1.18
Mycobacterial cells have dual nickel-cobalt sensors: sequence relationships and metal sites of metal-responsive repressors are not congruent. J Biol Chem (2007) 1.17
Lipid composition and transcriptional response of Mycobacterium tuberculosis grown under iron-limitation in continuous culture: identification of a novel wax ester. Microbiology (2007) 1.13
The case for hypervirulence through gene deletion in Mycobacterium tuberculosis. Trends Microbiol (2008) 1.11
Mapping of immunoreactive antigens of Francisella tularensis live vaccine strain. Proteomics (2002) 1.11
Novel strategies to identify biomarkers in tuberculosis. Biol Chem (2008) 1.07
NblA, a key protein of phycobilisome degradation, interacts with ClpC, a HSP100 chaperone partner of a cyanobacterial Clp protease. J Biol Chem (2008) 1.05
Helicobacter pylori HP0518 affects flagellin glycosylation to alter bacterial motility. Mol Microbiol (2010) 1.04
Proteins unique to intraphagosomally grown Mycobacterium tuberculosis. Proteomics (2006) 1.04
Iterative data analysis is the key for exhaustive analysis of peptide mass fingerprints from proteins separated by two-dimensional electrophoresis. J Am Soc Mass Spectrom (2003) 1.04
Subproteomes of soluble and structure-bound Helicobacter pylori proteins analyzed by two-dimensional gel electrophoresis and mass spectrometry. Proteomics (2005) 1.02
RNA profiling in host-pathogen interactions. Curr Opin Microbiol (2007) 1.01
The Helicobacter pylori CagA protein induces tyrosine dephosphorylation of ezrin. Proteomics (2004) 1.01
Crystal structure of inositol 1-phosphate synthase from Mycobacterium tuberculosis, a key enzyme in phosphatidylinositol synthesis. Structure (2002) 1.01
Link between organ-specific antigen processing by 20S proteasomes and CD8(+) T cell-mediated autoimmunity. J Exp Med (2002) 1.00
Quantification of global transcription patterns in prokaryotes using spotted microarrays. Genome Biol (2007) 0.99
Isoaspartyl dipeptidase activity of plant-type asparaginases. Biochem J (2002) 0.99
Role of the DinB homologs Rv1537 and Rv3056 in Mycobacterium tuberculosis. J Bacteriol (2010) 0.99
Autoantibodies to GPI and creatine kinase in RA. Nat Immunol (2002) 0.96
Murine CD146 is widely expressed on endothelial cells and is recognized by the monoclonal antibody ME-9F1. Histochem Cell Biol (2008) 0.96
Lack of stage-specific proteins in coccoid Helicobacter pylori cells. Infect Immun (2004) 0.93
Action and reaction: Chlamydophila pneumoniae proteome alteration in a persistent infection induced by iron deficiency. Proteomics (2004) 0.93
The Mycobacterium tuberculosis sigJ gene controls sensitivity of the bacterium to hydrogen peroxide. FEMS Microbiol Lett (2004) 0.93
Identification of candidate antigens for serologic detection of Helicobacter pylori-infected patients with gastric carcinoma. Int J Cancer (2004) 0.93
Identification of Helicobacter pylori surface proteins by selective proteinase K digestion and antibody phage display. J Microbiol Methods (2005) 0.93
Comprehensive quantitative proteome analysis of 20S proteasome subtypes from rat liver by isotope coded affinity tag and 2-D gel-based approaches. Proteomics (2006) 0.93
Proteomic analysis of the sarcosine-insoluble outer membrane fraction of the bacterial pathogen Bartonella henselae. Proteomics (2004) 0.93
Distinctive mass losses of tryptic peptides generated by matrix-assisted laser desorption/ionization time-of-flight/time-of-flight. Rapid Commun Mass Spectrom (2006) 0.92
Classical proteomics: two-dimensional electrophoresis/MALDI mass spectrometry. Methods Mol Biol (2009) 0.92
Quantitative phosphoproteomics reveals link between Helicobacter pylori infection and RNA splicing modulation in host cells. Proteomics (2011) 0.91
Helicobacter pylori vaccine development based on combined subproteome analysis. Proteomics (2004) 0.90
Cholesterol metabolism in Mycobacterium smegmatis. Environ Microbiol Rep (2012) 0.90
Immunoproteomics. Methods Mol Med (2004) 0.90
Selenium-binding protein 2, the major hepatic target for acetaminophen, shows sex differences in protein abundance. Electrophoresis (2006) 0.89
Web-accessible proteome databases for microbial research. Proteomics (2004) 0.89
Transgenic, fluorescent Leishmania mexicana allow direct analysis of the proteome of intracellular amastigotes. Mol Cell Proteomics (2008) 0.89
Gene expression and protein profiling of AGS gastric epithelial cells upon infection with Helicobacter pylori. Proteomics (2005) 0.87
Proteome analysis of apoptosis signaling by S-trityl-L-cysteine, a potent reversible inhibitor of human mitotic kinesin Eg5. Proteomics (2008) 0.86
Identification of proteins that modify cataract of mouse eye lens. Proteomics (2008) 0.86
Membrane-SPINE: an improved method to identify protein-protein interaction partners of membrane proteins in vivo. Proteomics (2011) 0.85
Inositol monophosphate phosphatase genes of Mycobacterium tuberculosis. BMC Microbiol (2010) 0.84
High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture(SILAC), two-dimensional gel electrophoresis(2DE) and nano-liquid chromatograpohy coupled to an LTQ-OrbitrapMass spectrometer. Mol Cell Proteomics (2012) 0.84
Stimulation of plasminogen activation by recombinant cellular prion protein is conserved in the NH2-terminal fragment PrP23-110. Thromb Haemost (2003) 0.83
Evidence for hSNM1B/Apollo functioning in the HSP70 mediated DNA damage response. Cell Cycle (2009) 0.83
Gene replacement in mycobacteria by using incompatible plasmids. Appl Environ Microbiol (2003) 0.83
Rapid construction of mycobacterial mutagenesis vectors using ligation-independent cloning. J Microbiol Methods (2010) 0.82
bkaR is a TetR-type repressor that controls an operon associated with branched-chain keto-acid metabolism in Mycobacteria. FEMS Microbiol Lett (2013) 0.81
A comparison of murine and human immunoproteomes of Helicobacter pylori validates the preclinical murine infection model for antigen screening. Infect Immun (2002) 0.81
Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species. Mol Cell Proteomics (2010) 0.81
Proteome comparison of Vibrio cholerae cultured in aerobic and anaerobic conditions. Proteomics (2004) 0.80
Analysis of automatically generated peptide mass fingerprints of cellular proteins and antigens from Helicobacter pylori 26695 separated by two-dimensional electrophoresis. Mol Cell Proteomics (2003) 0.80
A derivative of Mycobacterium smegmatis mc(2)155 that lacks the duplicated chromosomal region. Tuberculosis (Edinb) (2005) 0.80
An iterative calibration method with prediction of post-translational modifications for the construction of a two-dimensional electrophoresis database of mouse mammary gland proteins. Proteomics (2002) 0.79
Eye lens proteomics: from global approach to detailed information about phakinin and gamma E and F crystallin genes. Proteomics (2005) 0.78
Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells. Amino Acids (2010) 0.78
Mycobacterial proteomes. Methods Enzymol (2002) 0.78
Dynein light chain 8a of Toxoplasma gondii, a unique conoid-localized β-strand-swapped homodimer, is required for an efficient parasite growth. FASEB J (2012) 0.78
A European pathogenic microorganism proteome database: construction and maintenance. Comp Funct Genomics (2002) 0.78
Autoantibodies to asialoglycoprotein receptor (ASGPR) measured by a novel ELISA--revival of a disease-activity marker in autoimmune hepatitis. Clin Chim Acta (2009) 0.78
BμG@Sbase--a microbial gene expression and comparative genomic database. Nucleic Acids Res (2011) 0.77
Assembling proteomics data as a prerequisite for the analysis of large scale experiments. Chem Cent J (2009) 0.76
Influence of RET/PTC1 and RET/PTC3 oncoproteins in radiation-induced papillary thyroid carcinomas on amounts of cytoskeletal protein species. Amino Acids (2010) 0.76
Proteomic approaches to Salmonella Pathogenicity Island 2 encoded proteins and the SsrAB regulon. Proteomics (2002) 0.76
Microarray analysis of bacterial gene expression: towards the regulome. Comp Funct Genomics (2002) 0.76
Dietary phytoestrogen supplementation induces sex differences in the myocardial protein pattern of mice: a comparative proteomics study. Proteomics (2011) 0.76
Bioanalysis 2012. Electrophoresis (2012) 0.75