Published in Proteins on May 01, 2007
Combinations of ancestral modules in proteins. J Mol Evol (2007) 0.76
What positions nucleosomes?--A model. FEBS Lett (2002) 1.56
Gene splice sites correlate with nucleosome positions. Gene (2005) 1.31
The features of Drosophila core promoters revealed by statistical analysis. BMC Genomics (2006) 1.26
Sequence structure of human nucleosome DNA. J Biomol Struct Dyn (2006) 1.19
Distribution of rare triplets along mRNA and their relation to protein folding. J Biomol Struct Dyn (2002) 1.18
Loop fold structure of proteins: resolution of Levinthas paradox. J Biomol Struct Dyn (2002) 1.14
Yeast nucleosome DNA pattern: deconvolution from genome sequences of S. cerevisiae. J Biomol Struct Dyn (2005) 1.13
Three sequence rules for chromatin. J Biomol Struct Dyn (2006) 1.06
Dinucleosome DNA of human K562 cells: experimental and computational characterizations. J Mol Biol (2003) 1.04
Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes. BMC Genomics (2011) 0.89
Repertoires of the nucleosome-positioning dinucleotides. PLoS One (2009) 0.89
RNA secondary structure and squence conservation in C1 region of human immunodeficiency virus type 1 env gene. AIDS Res Hum Retroviruses (2002) 0.86
Protein sequences yield a proteomic code. J Biomol Struct Dyn (2003) 0.84
Flowering buds of globular proteins: transpiring simplicity of protein organization. Comp Funct Genomics (2002) 0.83
Sequence periodicity of Escherichia coli is concentrated in intergenic regions. BMC Mol Biol (2004) 0.82
Structural relatedness via flow networks in protein sequence space. J Theor Biol (2009) 0.82
Hidden messages in the nef gene of human immunodeficiency virus type 1 suggest a novel RNA secondary structure. Nucleic Acids Res (2003) 0.81
Protein modules conserved since LUCA. J Mol Evol (2006) 0.81
Nucleosome DNA sequence structure of isochores. BMC Genomics (2011) 0.80
Closed loops of TIM barrel protein fold. J Biomol Struct Dyn (2005) 0.79
FineStr: a web server for single-base-resolution nucleosome positioning. Bioinformatics (2010) 0.79
Apoptotic cleavage of DNA in human lymphocyte chromatin shows high sequence specificity. J Biomol Struct Dyn (2012) 0.79
Closed loops: persistence of the protein chain returns. Protein Eng (2002) 0.79
Spelling protein structure. J Biomol Struct Dyn (2003) 0.78
Origin and evolution of genes and genomes. Crucial role of triplet expansions. J Biomol Struct Dyn (2012) 0.78
Role of everlasting triplet expansions in protein evolution. J Mol Evol (2010) 0.78
Spectral analysis of distributions: finding periodic components in eukaryotic enzyme length data. OMICS (2002) 0.77
Nucleosome positioning patterns derived from human apoptotic nucleosomes. J Biomol Struct Dyn (2011) 0.77
Specific selection pressure at the third codon positions: contribution to 10- to 11-base periodicity in prokaryotic genomes. J Mol Evol (2006) 0.77
High resolution positioning of intron ends on the nucleosomes. Gene (2011) 0.77
Excessive clustering of third codon position pyrimidines in prokaryotes. J Biomol Struct Dyn (2008) 0.77
The path to life's origins. Remaining hurdles. J Biomol Struct Dyn (2013) 0.77
From protein sequence space to elementary protein modules. Gene (2007) 0.77
Nucleosomal TATA-switch: competing orientations of TATA on the nucleosome. Gene (2013) 0.77
Strong nucleosomes of mouse genome including recovered centromeric sequences. J Biomol Struct Dyn (2014) 0.76
Back to units of protein folding. J Biomol Struct Dyn (2002) 0.76
"Anticipated" nucleosome positioning pattern in prokaryotes. Gene (2011) 0.76
Sequence structure of van der Waals locks in proteins. J Biomol Struct Dyn (2005) 0.76
Visible periodicity of strong nucleosome DNA sequences. J Biomol Struct Dyn (2013) 0.76
Combinations of ancestral modules in proteins. J Mol Evol (2007) 0.76
Does protein relatedness require sequence matching? Alignment via networks in sequence space. J Biomol Struct Dyn (2008) 0.75
On the observable transition to living matter. Genomics Proteomics Bioinformatics (2011) 0.75
Universal full-length nucleosome mapping sequence probe. J Biomol Struct Dyn (2014) 0.75
Compensatory nature of Chargaff's second parity rule. J Biomol Struct Dyn (2012) 0.75
Hidden ancient repeats in DNA: mapping and quantification. Gene (2013) 0.75
Strong nucleosomes of A. thaliana concentrate in centromere regions. J Biomol Struct Dyn (2013) 0.75
Strong nucleosomes reside in meiotic centromeres of C. elegans. J Biomol Struct Dyn (2014) 0.75
Walking through protein sequence space. J Theor Biol (2006) 0.75
Tracing ancient mRNA hairpins. J Biomol Struct Dyn (2006) 0.75
Reading sequence-directed computational nucleosome maps. J Biomol Struct Dyn (2014) 0.75
Evolutionary networks in the formatted protein sequence space. J Comput Biol (2007) 0.75
Conserved sequences of prokaryotic proteomes and their compositional age. J Mol Evol (2005) 0.75