Published in J Acquir Immune Defic Syndr on June 01, 2007
Temporal and spatial dynamics of human immunodeficiency virus type 1 circulating recombinant forms 08_BC and 07_BC in Asia. J Virol (2008) 2.07
Recombination pattern reanalysis of some HIV-1 circulating recombination forms suggest the necessity and difficulty of revision. PLoS One (2014) 0.97
Phylodynamics of the HIV-1 epidemic in Cuba. PLoS One (2013) 0.89
Molecular surveillance of HIV-1 in Madrid, Spain: a phylogeographic analysis. J Virol (2011) 0.89
Long-range recombination gradient between HIV-1 subtypes B and C variants caused by sequence differences in the dimerization initiation signal region. J Mol Biol (2008) 0.87
CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba. EBioMedicine (2015) 0.87
Molecular epidemiology of HIV-1 in Panama: origin of non-B subtypes in samples collected from 2007 to 2013. PLoS One (2014) 0.79
High Degree of HIV-1 Group M (HIV-1M) Genetic Diversity within Circulating Recombinant Forms: Insight into the Early Events of HIV-1M Evolution. J Virol (2015) 0.78
Genetic Characterization of a Panel of Diverse HIV-1 Isolates at Seven International Sites. PLoS One (2016) 0.77
jModelTest: phylogenetic model averaging. Mol Biol Evol (2008) 44.78
jModelTest 2: more models, new heuristics and parallel computing. Nat Methods (2012) 27.83
ProtTest: selection of best-fit models of protein evolution. Bioinformatics (2005) 19.16
RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics (2010) 9.49
ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics (2011) 8.68
Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol (2006) 5.94
ALTER: program-oriented conversion of DNA and protein alignments. Nucleic Acids Res (2010) 5.32
GARD: a genetic algorithm for recombination detection. Bioinformatics (2006) 4.88
Pharmacogenetic study of statin therapy and cholesterol reduction. JAMA (2004) 4.47
The causes and consequences of HIV evolution. Nat Rev Genet (2004) 4.34
An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics (2007) 3.76
An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1. PLoS Comput Biol (2009) 3.11
IL-7 is a potent and proviral strain-specific inducer of latent HIV-1 cellular reservoirs of infected individuals on virally suppressive HAART. J Clin Invest (2005) 2.41
Tree scanning: a method for using haplotype trees in phenotype/genotype association studies. Genetics (2004) 1.87
Parallel evolution of the genetic code in arthropod mitochondrial genomes. PLoS Biol (2006) 1.85
Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution (2002) 1.62
Molecular epidemiology of HIV-1 genetic forms and its significance for vaccine development and therapy. Lancet Infect Dis (2002) 1.60
A coalescent model of recombination hotspots. Genetics (2003) 1.60
Molecular epidemiology of HIV-1 variants in the global AIDS pandemic: an update. AIDS Rev (2006) 1.46
Phylogenetic models of molecular evolution: next-generation data, fit, and performance. J Mol Evol (2013) 1.45
A comparison of phylogenetic network methods using computer simulation. PLoS One (2008) 1.40
Contribution to characterization of oxidative stress in HIV/AIDS patients. Pharmacol Res (2003) 1.35
Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography. BMC Bioinformatics (2007) 1.27
MtArt: a new model of amino acid replacement for Arthropoda. Mol Biol Evol (2006) 1.27
Perkinsoide chabelardi n. gen., a protozoan parasite with an intermediate evolutionary position: possible cause of the decrease of sardine fisheries? Environ Microbiol (2006) 1.26
The evolutionary value of recombination is constrained by genome modularity. PLoS Genet (2005) 1.26
The effect of recombination on the reconstruction of ancestral sequences. Genetics (2010) 1.25
Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method. Mol Biol Evol (2006) 1.23
Coalescent simulation of intracodon recombination. Genetics (2009) 1.20
Analysing recombination in nucleotide sequences. Mol Ecol Resour (2011) 1.18
Identification of a newly characterized HIV-1 BG intersubtype circulating recombinant form in Galicia, Spain, which exhibits a pseudotype-like virion structure. J Acquir Immune Defic Syndr (2002) 1.17
Limitations to contact tracing and phylogenetic analysis in establishing HIV type 1 transmission networks in Cuba. AIDS Res Hum Retroviruses (2007) 1.16
Diversity of mosaic structures and common ancestry of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Argentina revealed by analysis of near full-length genome sequences. J Gen Virol (2002) 1.15
Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand. PLoS One (2011) 1.11
New insights into the origin of the HIV type 1 subtype A epidemic in former Soviet Union's countries derived from sequence analyses of preepidemically transmitted viruses. AIDS Res Hum Retroviruses (2007) 1.10
Evidence for survival of Pleistocene climatic changes in Northern refugia by the land snail Trochoidea geyeri (Soós 1926) (Helicellinae, Stylommatophora). BMC Evol Biol (2003) 1.10
Meet Cuban Ebola fighters: interview with Félix Báez and Jorge Pérez. A MEDICC Review exclusive. MEDICC Rev (2015) 1.09
The analysis of near full-length genome sequences of human immunodeficiency virus type 1 BF intersubtype recombinant viruses from Chile, Venezuela and Spain reveals their relationship to diverse lineages of recombinant viruses related to CRF12_BF. Infect Genet Evol (2004) 1.04
Using models of nucleotide evolution to build phylogenetic trees. Dev Comp Immunol (2005) 1.00
Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy. Infect Genet Evol (2007) 1.00
Evaluation of genotypic tropism prediction tests compared with in vitro co-receptor usage in HIV-1 primary isolates of diverse subtypes. J Antimicrob Chemother (2011) 0.98
Analysis of near full-length genome sequences of HIV type 1 BF intersubtype recombinant viruses from Brazil reveals their independent origins and their lack of relationship to CRF12_BF. AIDS Res Hum Retroviruses (2004) 0.97
Identification of a new HIV type 1 circulating BF intersubtype recombinant form (CRF47_BF) in Spain. AIDS Res Hum Retroviruses (2010) 0.97
Identification of a novel HIV-1 circulating ADG intersubtype recombinant form (CRF19_cpx) in Cuba. J Acquir Immune Defic Syndr (2005) 0.97
Phylogenetic evidence for multiple sympatric ecological diversification in a marine snail. Evolution (2007) 0.97
Increasing HIV-1 genetic diversity in Europe. J Infect Dis (2007) 0.96
Phylogeography and diversification history of the day-gecko genus Phelsuma in the Seychelles islands. BMC Evol Biol (2013) 0.96
GenDecoder: genetic code prediction for metazoan mitochondria. Nucleic Acids Res (2006) 0.95
Characterization of phylogenetic networks with NetTest. BMC Bioinformatics (2010) 0.95
The HIV/AIDS epidemic in Cuba: description and tentative explanation of its low HIV prevalence. BMC Infect Dis (2007) 0.95
Molecular epidemiology of HIV-1 in St Petersburg, Russia: predominance of subtype A, former Soviet Union variant, and identification of intrasubtype subclusters. J Acquir Immune Defic Syndr (2009) 0.94
Inverted replication of vertebrate mitochondria. Mol Biol Evol (2008) 0.93
Analysis of HIV-1 pol sequences from Panama: identification of phylogenetic clusters within subtype B and detection of antiretroviral drug resistance mutations. Infect Genet Evol (2009) 0.93
Antiretroviral drug resistance in HIV-1 therapy-naive patients in Cuba. Infect Genet Evol (2013) 0.93
Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial. Retrovirology (2009) 0.93
Genetic recombination and its role in the development of the HIV-1 pandemic. AIDS (2002) 0.92
HIV-1 transmission cluster with T215D revertant mutation among newly diagnosed patients from the Basque Country, Spain. J Acquir Immune Defic Syndr (2009) 0.92
Identification of a novel HIV-1 complex circulating recombinant form (CRF18_cpx) of Central African origin in Cuba. AIDS (2005) 0.91
HIV Type 1 molecular epidemiology in cuba: high genetic diversity, frequent mosaicism, and recent expansion of BG intersubtype recombinant forms. AIDS Res Hum Retroviruses (2006) 0.90
What percentage of the Cuban HIV-AIDS epidemic is known? Rev Cubana Med Trop (2005) 0.89
Identification of unusual and novel HIV type 1 spliced transcripts generated in vivo. AIDS Res Hum Retroviruses (2010) 0.89
Mutational patterns and correlated amino acid substitutions in the HIV-1 protease after virological failure to nelfinavir- and lopinavir/ritonavir-based treatments. J Med Virol (2007) 0.89
jmodeltest.org: selection of nucleotide substitution models on the cloud. Bioinformatics (2014) 0.89
Formative assessment and academic achievement in pre-graduate students of health sciences. Adv Health Sci Educ Theory Pract (2007) 0.88
The effect of highly active antiretroviral therapy on outcome of central nervous system herpesviruses infection in Cuban human immunodeficiency virus-infected individuals. J Neurovirol (2007) 0.88
Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America. Mol Biol Evol (2009) 0.87
Widespread gene conversion of alpha-2-fucosyltransferase genes in mammals. J Mol Evol (2009) 0.87
Rapid expansion of a HIV-1 subtype F cluster of recent origin among men who have sex with men in Galicia, Spain. J Acquir Immune Defic Syndr (2012) 0.87
Disease progression and evolution of the HIV-1 env gene in 24 infected infants. Infect Genet Evol (2007) 0.87
Protein evolution along phylogenetic histories under structurally constrained substitution models. Bioinformatics (2013) 0.87
Antiretroviral drug resistance and phylogenetic diversity of HIV-1 in Chile. J Med Virol (2007) 0.87
High incidence of non-B and recombinant HIV-1 strains in newly diagnosed patients in Galicia, Spain: study of genotypic resistance. Antivir Ther (2003) 0.87
Lack of temporal structure in the short term HIV-1 evolution within asymptomatic naïve patients. Virology (2007) 0.87
Simulation of genome-wide evolution under heterogeneous substitution models and complex multispecies coalescent histories. Mol Biol Evol (2014) 0.87
High HIV-1 genetic diversity in Cuba. AIDS (2002) 0.86
Genome-wide heterogeneity of nucleotide substitution model fit. Genome Biol Evol (2011) 0.86
BRCA1 and BRCA2 mutations in breast cancer patients from Venezuela. Biol Res (2012) 0.86
Analysis of discrepancies in the interpretation of antiretroviral drug resistance results in HIV-1 infected patients of Basque Country, Spain. J Clin Virol (2005) 0.86
High prevalence of unique recombinant forms of HIV-1 in Ghana: molecular epidemiology from an antiretroviral resistance study. J Acquir Immune Defic Syndr (2008) 0.86
Oligonucleotide ligation assay for detection of mutations associated with reverse transcriptase and protease inhibitor resistance in non-B subtypes and recombinant forms of human immunodeficiency virus type 1. J Clin Microbiol (2005) 0.86
Computational design of centralized HIV-1 genes. Curr HIV Res (2010) 0.85
Identification of a new HIV type 1 BF intersubtype circulating recombinant form (CRF44_BF) in Chile. AIDS Res Hum Retroviruses (2010) 0.85