Published in Genome Biol on January 01, 2007
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Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes. BMC Genomics (2009) 0.82
Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts. BMC Genomics (2010) 0.82
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A Genome-Wide Landscape of Retrocopies in Primate Genomes. Genome Biol Evol (2015) 0.79
No-match ORESTES explored as tumor markers. Nucleic Acids Res (2009) 0.79
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Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer. Oncogene (2004) 2.02
Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation. Genome Biol (2005) 1.98
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Human antisense genes have unusually short introns: evidence for selection for rapid transcription. Trends Genet (2005) 1.35
Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas. Hum Mol Genet (2005) 1.31
The impact of SNPs on the interpretation of SAGE and MPSS experimental data. Nucleic Acids Res (2004) 1.19
Antisense regulation in X inactivation and autosomal imprinting. Cytogenet Genome Res (2002) 1.19
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Heterogeneous Sp1 mRNAs in human HepG2 cells include a product of homotypic trans-splicing. J Biol Chem (2000) 1.05
ORESTES are enriched in rare exon usage variants affecting the encoded proteins. C R Biol (2004) 0.95
Identification of human exons overexpressed in tumors through the use of genome and expressed sequence data. Physiol Genomics (2005) 0.95
LongSAGE analysis revealed the presence of a large number of novel antisense genes in the mouse genome. Bioinformatics (2004) 0.93
Expression of alternatively spliced FGF-2 antisense RNA transcripts in the central nervous system: regulation of FGF-2 mRNA translation. Mol Cell Endocrinol (2000) 0.89
Alternative pre-mRNA processing regulates cell-type specific expression of the IL4l1 and NUP62 genes. BMC Biol (2005) 0.87
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol (2004) 7.17
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High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites. Nat Biotechnol (2002) 3.04
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line. Proc Natl Acad Sci U S A (2009) 2.57
Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. J Bacteriol (2005) 2.15
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. Nucleic Acids Res (2008) 2.14
Nineteen additional unpredicted transcripts from human chromosome 21. Genomics (2002) 1.80
The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. Proc Natl Acad Sci U S A (2003) 1.79
Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae. Genome Res (2007) 1.75
Maternal embryonic leucine zipper kinase transcript abundance correlates with malignancy grade in human astrocytomas. Int J Cancer (2008) 1.54
Mitochondria as a source of reactive oxygen and nitrogen species: from molecular mechanisms to human health. Antioxid Redox Signal (2013) 1.43
The impact of SNPs on the interpretation of SAGE and MPSS experimental data. Nucleic Acids Res (2004) 1.19
Epigenetic silencing of CRABP2 and MX1 in head and neck tumors. Neoplasia (2009) 1.14
Colorectal cancer "methylator phenotype": fact or artifact? Neoplasia (2005) 1.13
Random X inactivation and extensive mosaicism in human placenta revealed by analysis of allele-specific gene expression along the X chromosome. PLoS One (2010) 1.11
Gene copy-number polymorphism caused by retrotransposition in humans. PLoS Genet (2013) 1.09
Generation of longer 3' cDNA fragments from massively parallel signature sequencing tags. Nucleic Acids Res (2004) 1.07
Methylation profile of genes CDKN2A (p14 and p16), DAPK1, CDH1, and ADAM23 in head and neck cancer. Cancer Genet Cytogenet (2007) 1.05
Epigenetic silencing of the adhesion molecule ADAM23 is highly frequent in breast tumors. Oncogene (2004) 1.02
Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing. Genome Biol (2010) 1.01
Gene expression arrays in cancer research: methods and applications. Crit Rev Oncol Hematol (2005) 1.01
ADAM23 negatively modulates alpha(v)beta(3) integrin activation during metastasis. Cancer Res (2009) 0.98
SATR-1 hypomethylation is a common and early event in breast cancer. Cancer Genet Cytogenet (2006) 0.96
Simultaneous CXCL12 and ESR1 CpG island hypermethylation correlates with poor prognosis in sporadic breast cancer. BMC Cancer (2010) 0.96
Splicing factors are differentially expressed in tumors. Genet Mol Res (2004) 0.93
ADAM33 gene silencing by promoter hypermethylation as a molecular marker in breast invasive lobular carcinoma. BMC Cancer (2009) 0.93
Epigenetic changes of CXCR4 and its ligand CXCL12 as prognostic factors for sporadic breast cancer. PLoS One (2011) 0.93
Tissue distribution of quiescin Q6/sulfhydryl oxidase (QSOX) in developing mouse. J Mol Histol (2007) 0.92
Do introns favor or avoid regions of amino acid conservation? Mol Biol Evol (2002) 0.91
The role of exon shuffling in shaping protein-protein interaction networks. BMC Genomics (2010) 0.91
Genetic diversity of Leishmania amazonensis strains isolated in northeastern Brazil as revealed by DNA sequencing, PCR-based analyses and molecular karyotyping. Kinetoplastid Biol Dis (2007) 0.90
Insights into gliomagenesis: systems biology unravels key pathways. Genome Med (2009) 0.90
Reduced transcription of TCOF1 in adult cells of Treacher Collins syndrome patients. BMC Med Genet (2009) 0.90
A transcript finishing initiative for closing gaps in the human transcriptome. Genome Res (2004) 0.89
Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual. Nucleic Acids Res (2011) 0.88
Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data. Bioinformatics (2007) 0.87
Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. Proc Natl Acad Sci U S A (2006) 0.87
PVALB, a new Hürthle adenoma diagnostic marker identified through gene expression. J Clin Endocrinol Metab (2010) 0.86
Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders. Nucleic Acids Res (2011) 0.84
Targeting MAGE-C1/CT7 expression increases cell sensitivity to the proteasome inhibitor bortezomib in multiple myeloma cell lines. PLoS One (2011) 0.83
Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts. BMC Genomics (2010) 0.82
Identification of FAM46D as a novel cancer/testis antigen using EST data and serological analysis. Genomics (2009) 0.82
Different evolutionary strategies for the origin of caspase-1 inhibitors. J Mol Evol (2008) 0.82
SPLOOCE: a new portal for the analysis of human splicing variants. RNA Biol (2012) 0.82
In silico comparison of the transcriptome derived from purified normal breast cells and breast tumor cell lines reveals candidate upregulated genes in breast tumor cells. Genomics (2002) 0.80
ADAM23 methylation and expression analysis in brain tumors. Neurosci Lett (2005) 0.79
Intratumoral Genetic Heterogeneity in Rectal Cancer: Are Single Biopsies representative of the entirety of the tumor? Ann Surg (2017) 0.79
Antibodies against the cancer-testis antigen CTSP-1 are frequently found in prostate cancer patients and are an independent prognostic factor for biochemical-recurrence. Int J Cancer (2008) 0.79
A novel human G protein-coupled receptor is over-expressed in prostate cancer. Genet Mol Res (2004) 0.79
Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. Gene (2003) 0.78
Chemopreventive effects of the dietary histone deacetylase inhibitor tributyrin alone or in combination with vitamin A during the promotion phase of rat hepatocarcinogenesis. J Nutr Biochem (2011) 0.78
Evolutionary history of exon shuffling. Genetica (2012) 0.78
Testing for natural selection in human exonic splicing regulators associated with evolutionary rate shifts. J Mol Evol (2013) 0.78
Characterization of a specific interaction between ADAM23 and cellular prion protein. Neurosci Lett (2009) 0.77
Modeling tumor evolutionary dynamics. Front Physiol (2013) 0.77
Hypermethylation of CpG island in the promoter region of CALCA in acute lymphoblastic leukemia with central nervous system (CNS) infiltration correlates with poorer prognosis. Leuk Res (2006) 0.77
CagA status of Helicobacter pylori infection and p53 gene mutations in gastric adenocarcinoma. Carcinogenesis (2003) 0.76
Human gene discovery through experimental definition of transcribed regions of the human genome. Curr Opin Chem Biol (2002) 0.76
Should We Give Up The Search for a Clinically Useful Gene Signature for the Prediction of Response of Rectal Cancer to Neoadjuvant Chemoradiation? Dis Colon Rectum (2016) 0.76
Development and application of a multiplex PCR procedure for the detection of DNA methylation in colorectal cancer. Oncol Rep (2005) 0.76
A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling. BMC Bioinformatics (2009) 0.75
Identification and complete sequencing of novel human transcripts through the use of mouse orthologs and testis cDNA sequences. Genet Mol Res (2004) 0.75
Coordinated, network-based research as a strategic component of science in Brazil. Genet Mol Res (2004) 0.75