Published in BMC Bioinformatics on March 21, 2007
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A tumor progression model for hepatocellular carcinoma: bioinformatic analysis of genomic data. Gastroenterology (2006) 1.99
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Gene expression profiling in human neurodegenerative disease. Nat Rev Neurol (2012) 1.59
The Grainyhead-like epithelial transactivator Get-1/Grhl3 regulates epidermal terminal differentiation and interacts functionally with LMO4. Dev Biol (2006) 1.58
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Circadian clock genes contribute to the regulation of hair follicle cycling. PLoS Genet (2009) 1.49
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Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities. Bioinformatics (2008) 1.45
Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities. Bioinformatics (2006) 1.42
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A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods. Mol Biol Evol (2004) 1.39
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Model-based method for transcription factor target identification with limited data. Proc Natl Acad Sci U S A (2010) 1.38
Identification of hair cycle-associated genes from time-course gene expression profile data by using replicate variance. Proc Natl Acad Sci U S A (2004) 1.36
Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi. Genome Res (2007) 1.28
A model-based analysis of microarray experimental error and normalisation. Nucleic Acids Res (2003) 1.26
Brain and muscle Arnt-like protein-1 (BMAL1) controls circadian cell proliferation and susceptibility to UVB-induced DNA damage in the epidermis. Proc Natl Acad Sci U S A (2012) 1.19
Accounting for probe-level noise in principal component analysis of microarray data. Bioinformatics (2005) 1.19
Reconstruction of ancestral protein interaction networks for the bZIP transcription factors. Proc Natl Acad Sci U S A (2007) 1.18
A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics (2007) 1.17
The epidermal differentiation-associated Grainyhead gene Get1/Grhl3 also regulates urothelial differentiation. EMBO J (2009) 1.13
Grainyhead-like factor Get1/Grhl3 regulates formation of the epidermal leading edge during eyelid closure. Dev Biol (2008) 1.12
Expression of an engrailed-LMO4 fusion protein in mammary epithelial cells inhibits mammary gland development in mice. Oncogene (2004) 1.10
Network analysis of skin tumor progression identifies a rewired genetic architecture affecting inflammation and tumor susceptibility. Genome Biol (2011) 1.08
Evolutionary systems biology of amino acid biosynthetic cost in yeast. PLoS One (2010) 1.03
The estrogen-regulated anterior gradient 2 (AGR2) protein in breast cancer: a potential drug target and biomarker. Breast Cancer Res (2013) 1.02
Imaging corneal pathology in a transgenic mouse model using nonlinear microscopy. J Biomed Opt (2006) 1.02
Identification and characterization of Grainyhead-like epithelial transactivator (GET-1), a novel mammalian Grainyhead-like factor. Dev Dyn (2003) 1.01
TFInfer: a tool for probabilistic inference of transcription factor activities. Bioinformatics (2010) 0.99
GRHL3/GET1 and trithorax group members collaborate to activate the epidermal progenitor differentiation program. PLoS Genet (2012) 0.99
Estimating replicate time shifts using Gaussian process regression. Bioinformatics (2010) 0.97
e-Fungi: a data resource for comparative analysis of fungal genomes. BMC Genomics (2007) 0.96
How the skin can tell time. J Invest Dermatol (2009) 0.96
On the correlation between composition and site-specific evolutionary rate: implications for phylogenetic inference. Mol Biol Evol (2005) 0.94
Genome-wide occupancy links Hoxa2 to Wnt-β-catenin signaling in mouse embryonic development. Nucleic Acids Res (2012) 0.92
Clock genes, hair growth and aging. Aging (Albany NY) (2010) 0.90
The evolution of tRNA-Leu genes in animal mitochondrial genomes. J Mol Evol (2003) 0.90
Co-factors of LIM domains (Clims/Ldb/Nli) regulate corneal homeostasis and maintenance of hair follicle stem cells. Dev Biol (2007) 0.90
Chaos and reliability in balanced spiking networks with temporal drive. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.90
The estrogen-responsive Agr2 gene regulates mammary epithelial proliferation and facilitates lobuloalveolar development. Dev Biol (2012) 0.90
A reversible jump method for Bayesian phylogenetic inference with a nonhomogeneous substitution model. Mol Biol Evol (2007) 0.89
A probabilistic dynamical model for quantitative inference of the regulatory mechanism of transcription. Bioinformatics (2006) 0.88
Bayesian detection of non-sinusoidal periodic patterns in circadian expression data. Bioinformatics (2009) 0.87
Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte Carlo. Bioinformatics (2008) 0.86
Use of RT-PCR and DNA microarrays to characterize RNA recovered by non-invasive tape harvesting of normal and inflamed skin. J Invest Dermatol (2004) 0.85
The Ets transcription factor EHF as a regulator of cornea epithelial cell identity. J Biol Chem (2013) 0.85
Improved variational Bayes inference for transcript expression estimation. Stat Appl Genet Mol Biol (2014) 0.84
Xenopus Xlmo4 is a GATA cofactor during ventral mesoderm formation and regulates Ldb1 availability at the dorsal mesoderm and the neural plate. Dev Biol (2003) 0.84
A GRHL3-regulated repair pathway suppresses immune-mediated epidermal hyperplasia. J Clin Invest (2014) 0.84
Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison. BMC Syst Biol (2012) 0.83
Relationship between genome and epigenome--challenges and requirements for future research. BMC Genomics (2014) 0.82
A nervous hedgehog rolls into the hair follicle stem cell scene. Cell Stem Cell (2011) 0.81
Identification of telogen markers underscores that telogen is far from a quiescent hair cycle phase. J Invest Dermatol (2011) 0.81
Have hair follicle stem cells shed their tranquil image? Cell Stem Cell (2008) 0.81
Fast Nonparametric Clustering of Structured Time-Series. IEEE Trans Pattern Anal Mach Intell (2015) 0.81
Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters. BMC Bioinformatics (2013) 0.81
A kingdom-specific protein domain HMM library for improved annotation of fungal genomes. BMC Genomics (2007) 0.80
puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis. BMC Bioinformatics (2013) 0.80
Spatial scale and place field stability in a grid-to-place cell model of the dorsoventral axis of the hippocampus. Hippocampus (2013) 0.79
The tobacco carcinogen nitrosamine induces a differential gene expression response in tumour susceptible A/J and resistant C3H mouse lungs. Eur J Cancer (2012) 0.79
In situ multiphoton optical tomography of hair follicles in mice. J Biomed Opt (2007) 0.78
Including probe-level measurement error in robust mixture clustering of replicated microarray gene expression. Stat Appl Genet Mol Biol (2010) 0.78
Distinguishing Asthma Phenotypes Using Machine Learning Approaches. Curr Allergy Asthma Rep (2015) 0.77
Phase-amplitude descriptions of neural oscillator models. J Math Neurosci (2013) 0.77
Epidermal stem cells ride the circadian wave. Genome Biol (2013) 0.77
tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor. Bioinformatics (2011) 0.77
Transcriptional regulation of epidermal barrier formation. Methods Mol Biol (2011) 0.75
Analysis of gene expression in skin using laser capture microdissection. Methods Mol Biol (2013) 0.75
Mining regulatory network connections by ranking transcription factor target genes using time series expression data. Methods Mol Biol (2013) 0.75