Published in J Cell Sci on April 01, 2007
RNA-directed DNA methylation. Curr Opin Plant Biol (2011) 1.84
Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell (2010) 1.77
The PHD domain of Np95 (mUHRF1) is involved in large-scale reorganization of pericentromeric heterochromatin. Mol Biol Cell (2008) 1.53
Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin. EMBO Rep (2009) 1.40
LITTLE NUCLEI genes affecting nuclear morphology in Arabidopsis thaliana. Plant Cell (2007) 1.36
Lysine acetylation is a widespread protein modification for diverse proteins in Arabidopsis. Plant Physiol (2011) 1.36
Constitutive heterochromatin reorganization during somatic cell reprogramming. EMBO J (2011) 1.27
Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei. PLoS Comput Biol (2010) 1.22
Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLoS Genet (2009) 1.17
Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei. Nucleic Acids Res (2009) 1.15
Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation. Proc Natl Acad Sci U S A (2011) 1.10
Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells. PLoS One (2008) 1.09
Genes of the most conserved WOX clade in plants affect root and flower development in Arabidopsis. BMC Evol Biol (2008) 1.09
Plant response to stress meets dedifferentiation. Planta (2011) 1.02
Chromatin Organization by Repetitive Elements (CORE): A Genomic Principle for the Higher-Order Structure of Chromosomes. Genes (Basel) (2011) 1.00
Photoreceptors CRYTOCHROME2 and phytochrome B control chromatin compaction in Arabidopsis. Plant Physiol (2010) 0.97
A model of DNA repeat-assembled mitotic chromosomal skeleton. Genes (Basel) (2011) 0.94
Interphase chromatin organisation in Arabidopsis nuclei: constraints versus randomness. Chromosoma (2012) 0.92
Characterization of the early events leading to totipotency in an Arabidopsis protoplast liquid culture by temporal transcript profiling. Plant Cell (2013) 0.91
Spatial distribution of epigenetic modifications in Brachypodium distachyon embryos during seed maturation and germination. PLoS One (2014) 0.89
3D-FISH analysis of embryonic nuclei in mouse highlights several abrupt changes of nuclear organization during preimplantation development. BMC Dev Biol (2012) 0.89
The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility. Chromosoma (2013) 0.88
Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa. BMC Plant Biol (2013) 0.87
Transcriptome of protoplasts reprogrammed into stem cells in Physcomitrella patens. PLoS One (2012) 0.86
Unleashing the potential of the root hair cell as a single plant cell type model in root systems biology. Front Plant Sci (2013) 0.86
A small RNA mediated regulation of a stress-activated retrotransposon and the tissue specific transposition during the reproductive period in Arabidopsis. Front Plant Sci (2015) 0.85
Chromatin in 3D: progress and prospects for plants. Genome Biol (2015) 0.84
Regulation of RNA metabolism is important for in vitro dedifferentiation of plant cells. J Plant Res (2015) 0.81
3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei. Plant Methods (2009) 0.81
Chromatin dynamics during cellular differentiation in the female reproductive lineage of flowering plants. Plant J (2015) 0.80
Structure and Function of Centromeric and Pericentromeric Heterochromatin in Arabidopsis thaliana. Front Plant Sci (2015) 0.80
Light signaling controls nuclear architecture reorganization during seedling establishment. Proc Natl Acad Sci U S A (2015) 0.80
The perichromatin region of the plant cell nucleus is the area with the strongest co-localisation of snRNA and SR proteins. Planta (2012) 0.79
Dedifferentiation of Arabidopsis thaliana cells is accompanied by a strong decrease in RNA polymerase II transcription activity and poly(A+) RNA and 25S rRNA eradication from the cytoplasm. Protoplasma (2014) 0.78
The HIRA complex that deposits the histone H3.3 is conserved in Arabidopsis and facilitates transcriptional dynamics. Biol Open (2014) 0.77
Recondensation level of repetitive sequences in the plant protoplast nucleus is limited by oxidative stress. J Exp Bot (2010) 0.77
Involvement of Plant Stem Cells or Stem Cell-Like Cells in Dedifferentiation. Front Plant Sci (2015) 0.76
Large-scale chromatin de-compaction induced by low light is not accompanied by nucleosomal displacement. Plant Signal Behav (2010) 0.76
S1-Type Endonuclease 2 in Dedifferentiating Arabidopsis Protoplasts: Translocation to the Nucleus in Senescing Protoplasts Is Associated with De-Glycosylation. PLoS One (2017) 0.75
Senescence Meets Dedifferentiation. Plants (Basel) (2015) 0.75
Tuning cell fate: from insights to vertebrate regeneration. Organogenesis (2014) 0.75
Spatial relationship between chromosomal domains in diploid and autotetraploid Arabidopsis thaliana nuclei. Nucleus (2016) 0.75
Histone H3 and H4 acetylation patterns are more dynamic than those of DNA methylation in Brachypodium distachyon embryos during seed maturation and germination. Protoplasma (2017) 0.75
Genetic Dissection of Morphometric Traits Reveals that Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana. G3 (Bethesda) (2017) 0.75
Non-random domain organization of the Arabidopsis genome at the nuclear periphery. Genome Res (2017) 0.75
Spatially confined folding of chromatin in the interphase nucleus. Proc Natl Acad Sci U S A (2009) 3.19
Heterochromatin protein 1 is recruited to various types of DNA damage. J Cell Biol (2009) 2.26
LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. Proc Natl Acad Sci U S A (2006) 2.08
Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location. Genes Dev (2003) 1.96
The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation. Nat Struct Mol Biol (2007) 1.93
Rapid switching of TFIIH between RNA polymerase I and II transcription and DNA repair in vivo. Mol Cell (2002) 1.90
Domain-wide regulation of gene expression in the human genome. Genome Res (2007) 1.86
The three-dimensional structure of human interphase chromosomes is related to the transcriptome map. Mol Cell Biol (2007) 1.82
The major architects of chromatin: architectural proteins in bacteria, archaea and eukaryotes. Crit Rev Biochem Mol Biol (2008) 1.80
Splicing switch of an epigenetic regulator by RNA helicases promotes tumor-cell invasiveness. Nat Struct Mol Biol (2012) 1.67
In vivo HP1 targeting causes large-scale chromatin condensation and enhanced histone lysine methylation. Mol Cell Biol (2005) 1.60
Stochastic and reversible assembly of a multiprotein DNA repair complex ensures accurate target site recognition and efficient repair. J Cell Biol (2010) 1.49
Dynamic in vivo interaction of DDB2 E3 ubiquitin ligase with UV-damaged DNA is independent of damage-recognition protein XPC. J Cell Sci (2007) 1.42
Random loop model for long polymers. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 1.39
Condensed chromatin domains in the mammalian nucleus are accessible to large macromolecules. EMBO Rep (2003) 1.35
A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data. Bioinformatics (2007) 1.26
Recruitment of the nucleotide excision repair endonuclease XPG to sites of UV-induced dna damage depends on functional TFIIH. Mol Cell Biol (2006) 1.24
Light-regulated large-scale reorganization of chromatin during the floral transition in Arabidopsis. Plant J (2007) 1.23
Statistical analysis of 3D images detects regular spatial distributions of centromeres and chromocenters in animal and plant nuclei. PLoS Comput Biol (2010) 1.22
DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC. PLoS Genet (2010) 1.21
Cytogenetic tools for Arabidopsis thaliana. Chromosome Res (2003) 1.18
Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLoS Genet (2009) 1.17
Tissue- and expression level-specific chromatin looping at maize b1 epialleles. Plant Cell (2009) 1.14
Live cell imaging of repetitive DNA sequences via GFP-tagged polydactyl zinc finger proteins. Nucleic Acids Res (2007) 1.14
The Arabidopsis LHP1 protein is a component of euchromatin. Planta (2005) 1.13
Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation. Proc Natl Acad Sci U S A (2011) 1.10
Mathematical modeling of nucleotide excision repair reveals efficiency of sequential assembly strategies. Mol Cell (2005) 1.09
Estrogen regulation and physiopathologic significance of alternative promoters in breast cancer. Cancer Res (2010) 1.08
Cytogenetic analyses of Arabidopsis. Methods Mol Biol (2006) 1.07
Polycomb group gene silencing proteins are concentrated in the perichromatin compartment of the mammalian nucleus. J Cell Sci (2003) 1.07
Imaging in situ protein-DNA interactions in the cell nucleus using FRET-FLIM. Exp Cell Res (2005) 1.06
The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation. Plant J (2010) 1.05
Micro magnetic tweezers for nanomanipulation inside live cells. Biophys J (2004) 1.04
Cytogenetics as a tool to study gene regulation. Trends Plant Sci (2004) 1.02
Chromatin folding--from biology to polymer models and back. J Cell Sci (2011) 1.01
In vivo dynamics of chromatin-associated complex formation in mammalian nucleotide excision repair. Proc Natl Acad Sci U S A (2004) 1.00
Direct observation of nanomechanical properties of chromatin in living cells. Nano Lett (2007) 0.99
Genome function and nuclear architecture: from gene expression to nanoscience. Genome Res (2003) 0.98
Photoreceptors CRYTOCHROME2 and phytochrome B control chromatin compaction in Arabidopsis. Plant Physiol (2010) 0.97
Assembly of multiprotein complexes that control genome function. J Cell Biol (2009) 0.96
Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PLoS One (2011) 0.95
Spatial organization of nucleotide excision repair proteins after UV-induced DNA damage in the human cell nucleus. J Cell Sci (2008) 0.94
The perichromatin region: a functional compartment in the nucleus that determines large-scale chromatin folding. Semin Cell Dev Biol (2007) 0.92
Successful gene tagging in lettuce using the Tnt1 retrotransposon from tobacco. Plant Physiol (2007) 0.92
Pericentromeric heterochromatin domains are maintained without accumulation of HP1. Mol Biol Cell (2007) 0.92
Nuclear architecture and genome functioning in plants and animals: what can we learn from both? Exp Cell Res (2004) 0.92
Studying physical chromatin interactions in plants using Chromosome Conformation Capture (3C). Nat Protoc (2009) 0.91
Transcribed DNA is preferentially located in the perichromatin region of mammalian cell nuclei. Exp Cell Res (2010) 0.91
Characterization of the early events leading to totipotency in an Arabidopsis protoplast liquid culture by temporal transcript profiling. Plant Cell (2013) 0.91
DamID, a new tool for studying plant chromatin profiling in vivo, and its use to identify putative LHP1 target loci. Plant J (2006) 0.90
Three-dimensional genome organization in interphase and its relation to genome function. Semin Cell Dev Biol (2007) 0.90
Extensive phenotypic variation in early flowering mutants of Arabidopsis. Plant Physiol (2004) 0.89
Introgression browser: high-throughput whole-genome SNP visualization. Plant J (2015) 0.86
The RNA helicase DDX5/p68 is a key factor promoting c-fos expression at different levels from transcription to mRNA export. Nucleic Acids Res (2012) 0.86
Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis. Plant Physiol (2008) 0.84
Shedding light on large-scale chromatin reorganization in Arabidopsis thaliana. Mol Plant (2012) 0.83
Nuclear architecture: Is it important for genome function and can we prove it? J Cell Biochem (2007) 0.83
Immunocytological analysis of chromatin in isolated nuclei. Methods Mol Biol (2010) 0.83
Chromatin dynamics and Arabidopsis development. Chromosome Res (2003) 0.82
3D fluorescent in situ hybridization using Arabidopsis leaf cryosections and isolated nuclei. Plant Methods (2009) 0.81
Ingested plant miRNAs regulate gene expression in animals. Cell Res (2011) 0.81
The Ddx5 and Ddx17 RNA helicases are cornerstones in the complex regulatory array of steroid hormone-signaling pathways. Nucleic Acids Res (2013) 0.81
Intracellular manipulation of chromatin using magnetic nanoparticles. Chromosome Res (2008) 0.81
DAYSLEEPER: a nuclear and vesicular-localized protein that is expressed in proliferating tissues. BMC Plant Biol (2013) 0.81
Nuclear architecture and chromatin dynamics in interphase nuclei of Arabidopsis thaliana. Cytogenet Genome Res (2014) 0.79
Truncated HP1 lacking a functional chromodomain induces heterochromatinization upon in vivo targeting. Histochem Cell Biol (2005) 0.79
Nuclear fusions contribute to polyploidization of the gigantic nuclei in the chalazal endosperm of Arabidopsis. Planta (2004) 0.79
Introduction and expression of a deregulated tobacco nitrate reductase gene in potato lead to highly reduced nitrate levels in transgenic tubers. Transgenic Res (2002) 0.79
Exploring the behavior of small eukaryotic gene networks. J Theor Biol (2008) 0.78
Expression of ENOD40 during tomato plant development. Planta (2003) 0.78
Mapping in vivo protein-DNA interactions in plants by DamID, a DNA adenine methylation-based method. Methods Mol Biol (2011) 0.78
A fruitful chromatin harvest: meeting summary of the Second European Workshop on Plant Chromatin 2011 in Versailles, France. Epigenetics (2012) 0.78
Structural analysis of interphase X-chromatin based on statistical shape theory. Biochim Biophys Acta (2008) 0.77
Stable S/MAR-based episomal vectors are regulated at the chromatin level. Chromosome Res (2010) 0.77
Use of the total error approach to evaluate the performance of a semi-quantitative immunological method (BIACORE method) for detecting sulfamethazine in bovine milk. J Chromatogr B Analyt Technol Biomed Life Sci (2009) 0.77
A role for MeCP2 in switching gene activity via chromatin unfolding and HP1γ displacement. PLoS One (2013) 0.76
Large-scale chromatin de-compaction induced by low light is not accompanied by nucleosomal displacement. Plant Signal Behav (2010) 0.76
Rethinking the life sciences. To better serve society, biomedical research has to regain its trust and get organized to tackle larger projects. EMBO Rep (2013) 0.75
Where do we go in the nucleus? Biol Cell (2004) 0.75
Chromatin is wonderful stuff. Semin Cell Dev Biol (2007) 0.75
From linear genome sequence to three-dimensional organization of the cell nucleus. Genome Biol (2003) 0.75