|
1
|
Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons.
|
Int J Syst Evol Microbiol
|
2010
|
2.50
|
|
2
|
Expression profiling in Medicago truncatula identifies more than 750 genes differentially expressed during nodulation, including many potential regulators of the symbiotic program.
|
Plant Physiol
|
2004
|
1.91
|
|
3
|
Overlaps in the transcriptional profiles of Medicago truncatula roots inoculated with two different Glomus fungi provide insights into the genetic program activated during arbuscular mycorrhiza.
|
Plant Physiol
|
2005
|
1.76
|
|
4
|
Genome-wide analysis of histone H3 acetylation patterns in AML identifies PRDX2 as an epigenetically silenced tumor suppressor gene.
|
Blood
|
2011
|
1.73
|
|
5
|
The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis.
|
J Biotechnol
|
2008
|
1.60
|
|
6
|
Quantitative proteomic analysis of the Hfq-regulon in Sinorhizobium meliloti 2011.
|
PLoS One
|
2012
|
1.46
|
|
7
|
The LuxR homolog ExpR, in combination with the Sin quorum sensing system, plays a central role in Sinorhizobium meliloti gene expression.
|
J Bacteriol
|
2004
|
1.38
|
|
8
|
Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source.
|
J Biotechnol
|
2003
|
1.35
|
|
9
|
Transcriptome profiling reveals the importance of plasmid pSymB for osmoadaptation of Sinorhizobium meliloti.
|
J Bacteriol
|
2006
|
1.33
|
|
10
|
Sinorhizobium meliloti ExoR and ExoS proteins regulate both succinoglycan and flagellum production.
|
J Bacteriol
|
2004
|
1.31
|
|
11
|
Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti.
|
Appl Environ Microbiol
|
2006
|
1.31
|
|
12
|
Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.
|
J Biotechnol
|
2003
|
1.30
|
|
13
|
Sinorhizobium meliloti regulator MucR couples exopolysaccharide synthesis and motility.
|
Mol Plant Microbe Interact
|
2008
|
1.24
|
|
14
|
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti.
|
BMC Genomics
|
2010
|
1.24
|
|
15
|
The Sinorhizobium meliloti fur gene regulates, with dependence on Mn(II), transcription of the sitABCD operon, encoding a metal-type transporter.
|
J Bacteriol
|
2004
|
1.23
|
|
16
|
Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.
|
BMC Genomics
|
2013
|
1.21
|
|
17
|
Striking complexity of lipopolysaccharide defects in a collection of Sinorhizobium meliloti mutants.
|
J Bacteriol
|
2003
|
1.17
|
|
18
|
Transcriptome profiling uncovers metabolic and regulatory processes occurring during the transition from desiccation-sensitive to desiccation-tolerant stages in Medicago truncatula seeds.
|
Plant J
|
2006
|
1.16
|
|
19
|
Sinorhizobium meliloti acpXL mutant lacks the C28 hydroxylated fatty acid moiety of lipid A and does not express a slow migrating form of lipopolysaccharide.
|
J Biol Chem
|
2003
|
1.14
|
|
20
|
Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates.
|
BMC Microbiol
|
2012
|
1.13
|
|
21
|
Virulence evolution of the human pathogen Neisseria meningitidis by recombination in the core and accessory genome.
|
PLoS One
|
2011
|
1.12
|
|
22
|
Genome sequence of the soybean symbiont Sinorhizobium fredii HH103.
|
J Bacteriol
|
2012
|
1.11
|
|
23
|
Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia.
|
Blood
|
2010
|
1.11
|
|
24
|
Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011.
|
BMC Genomics
|
2008
|
1.09
|
|
25
|
Comparative genome biology of a serogroup B carriage and disease strain supports a polygenic nature of meningococcal virulence.
|
J Bacteriol
|
2010
|
1.08
|
|
26
|
Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula.
|
J Biotechnol
|
2004
|
1.06
|
|
27
|
Symbiotic properties and first analyses of the genomic sequence of the fast growing model strain Sinorhizobium fredii HH103 nodulating soybean.
|
J Biotechnol
|
2011
|
1.04
|
|
28
|
Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.
|
Phytochemistry
|
2006
|
1.04
|
|
29
|
Specific binding of the regulatory protein ExpG to promoter regions of the galactoglucan biosynthesis gene cluster of Sinorhizobium meliloti--a combined molecular biology and force spectroscopy investigation.
|
J Struct Biol
|
2003
|
1.03
|
|
30
|
Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains.
|
BMC Genomics
|
2005
|
1.03
|
|
31
|
Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling.
|
Genome Biol
|
2008
|
1.03
|
|
32
|
Competitive and cooperative effects in quorum-sensing-regulated galactoglucan biosynthesis in Sinorhizobium meliloti.
|
J Bacteriol
|
2008
|
1.01
|
|
33
|
Detailed studies of the binding mechanism of the Sinorhizobium meliloti transcriptional activator ExpG to DNA.
|
Microbiology
|
2005
|
0.99
|
|
34
|
Identification of genes relevant to symbiosis and competitiveness in Sinorhizobium meliloti using signature-tagged mutants.
|
Mol Plant Microbe Interact
|
2008
|
0.98
|
|
35
|
Identification of mycorrhiza-regulated genes with arbuscule development-related expression profile.
|
Plant Mol Biol
|
2004
|
0.98
|
|
36
|
Transcript profiling reveals new insights into the acclimation of the mesophilic fresh-water cyanobacterium Synechococcus elongatus PCC 7942 to iron starvation.
|
Plant Physiol
|
2008
|
0.98
|
|
37
|
The outer membrane protein TolC from Sinorhizobium meliloti affects protein secretion, polysaccharide biosynthesis, antimicrobial resistance, and symbiosis.
|
Mol Plant Microbe Interact
|
2008
|
0.97
|
|
38
|
The DivJ, CbrA and PleC system controls DivK phosphorylation and symbiosis in Sinorhizobium meliloti.
|
Mol Microbiol
|
2013
|
0.97
|
|
39
|
Single-molecule experiments in synthetic biology: an approach to the affinity ranking of DNA-binding peptides.
|
Angew Chem Int Ed Engl
|
2005
|
0.94
|
|
40
|
What can bacterial genome research teach us about bacteria-plant interactions?
|
Curr Opin Plant Biol
|
2004
|
0.93
|
|
41
|
Fine-tuning of galactoglucan biosynthesis in Sinorhizobium meliloti by differential WggR (ExpG)-, PhoB-, and MucR-dependent regulation of two promoters.
|
J Bacteriol
|
2008
|
0.91
|
|
42
|
Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data.
|
J Biotechnol
|
2008
|
0.91
|
|
43
|
Effector-stimulated single molecule protein-DNA interactions of a quorum-sensing system in Sinorhizobium meliloti.
|
Biophys J
|
2007
|
0.90
|
|
44
|
ppGpp in Sinorhizobium meliloti: biosynthesis in response to sudden nutritional downshifts and modulation of the transcriptome.
|
Mol Microbiol
|
2011
|
0.90
|
|
45
|
Small RNA sX13: a multifaceted regulator of virulence in the plant pathogen Xanthomonas.
|
PLoS Pathog
|
2013
|
0.89
|
|
46
|
Novel Sinorhizobium meliloti quorum sensing positive and negative regulatory feedback mechanisms respond to phosphate availability.
|
Mol Microbiol
|
2009
|
0.88
|
|
47
|
Under the influence of the active deodorant ingredient 4-hydroxy-3-methoxybenzyl alcohol, the skin bacterium Corynebacterium jeikeium moderately responds with differential gene expression.
|
J Biotechnol
|
2006
|
0.88
|
|
48
|
Genome Sequence of Sinorhizobium meliloti Rm41.
|
Genome Announc
|
2013
|
0.88
|
|
49
|
Linking plant nutritional status to plant-microbe interactions.
|
PLoS One
|
2013
|
0.87
|
|
50
|
Transcriptional profiling of the marine oil-degrading bacterium Alcanivorax borkumensis during growth on n-alkanes.
|
FEMS Microbiol Lett
|
2011
|
0.87
|
|
51
|
Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.
|
J Biotechnol
|
2008
|
0.87
|
|
52
|
Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti.
|
Biochem Biophys Res Commun
|
2009
|
0.86
|
|
53
|
Two new Sinorhizobium meliloti LysR-type transcriptional regulators required for nodulation.
|
J Bacteriol
|
2005
|
0.86
|
|
54
|
Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyte Azoarcus sp. strain BH72.
|
Environ Microbiol
|
2012
|
0.85
|
|
55
|
Four promoters subject to regulation by ExoR and PhoB direct transcription of the Sinorhizobium melilotiexoYFQ operon involved in the biosynthesis of succinoglycan.
|
J Mol Microbiol Biotechnol
|
2004
|
0.85
|
|
56
|
Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications.
|
J Biotechnol
|
2004
|
0.84
|
|
57
|
Transcriptional reprogramming and phenotypical changes associated with growth of Xanthomonas campestris pv. campestris in cabbage xylem sap.
|
FEMS Microbiol Ecol
|
2014
|
0.84
|
|
58
|
RNase E affects the expression of the acyl-homoserine lactone synthase gene sinI in Sinorhizobium meliloti.
|
J Bacteriol
|
2014
|
0.83
|
|
59
|
Increased HDAC1 deposition at hematopoietic promoters in AML and its association with patient survival.
|
Leuk Res
|
2010
|
0.83
|
|
60
|
Temporal expression program of quorum sensing-based transcription regulation in Sinorhizobium meliloti.
|
J Bacteriol
|
2013
|
0.83
|
|
61
|
Analysis of the interaction of Clavibacter michiganensis subsp. michiganensis with its host plant tomato by genome-wide expression profiling.
|
J Biotechnol
|
2012
|
0.81
|
|
62
|
Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris: role and regulation of {sigma}E-dependent activity.
|
J Bacteriol
|
2010
|
0.81
|
|
63
|
The gellan gum biosynthetic genes gelC and gelE encode two separate polypeptides homologous to the activator and the kinase domains of tyrosine autokinases.
|
J Mol Microbiol Biotechnol
|
2004
|
0.81
|
|
64
|
Production of succinoglycan polymer in Sinorhizobium meliloti is affected by SMb21506 and requires the N-terminal domain of ExoP.
|
Mol Plant Microbe Interact
|
2009
|
0.79
|
|
65
|
Insights into the noncoding RNome of nitrogen-fixing endosymbiotic α-proteobacteria.
|
Mol Plant Microbe Interact
|
2013
|
0.78
|
|
66
|
Environmental factors affecting the expression of pilAB as well as the proteome and transcriptome of the grass endophyte Azoarcus sp. strain BH72.
|
PLoS One
|
2012
|
0.78
|
|
67
|
Transcript profiling indicates that the absence of PsbO affects the coordination of C and N metabolism in Synechocystis sp. PCC 6803.
|
Physiol Plant
|
2008
|
0.78
|
|
68
|
Single-molecule experiments to elucidate the minimal requirement for DNA recognition by transcription factor epitopes.
|
Small
|
2009
|
0.78
|
|
69
|
Quorum sensing restrains growth and is rapidly inactivated during domestication of Sinorhizobium meliloti.
|
Environ Microbiol Rep
|
2015
|
0.78
|
|
70
|
RhizoRegNet--a database of rhizobial transcription factors and regulatory networks.
|
J Biotechnol
|
2010
|
0.77
|
|
71
|
Insights into the genome of the xanthan-producing phytopathogen Xanthomonas arboricola pv. pruni 109 by comparative genomic hybridization.
|
J Biotechnol
|
2011
|
0.77
|
|
72
|
Space- and time-resolved protein dynamics in single bacterial cells observed on a chip.
|
J Biotechnol
|
2010
|
0.76
|
|
73
|
Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling.
|
Mol Genet Genomics
|
2011
|
0.76
|
|
74
|
Reverse engineering of an affinity-switchable molecular interaction characterized by atomic force microscopy single-molecule force spectroscopy.
|
Langmuir
|
2007
|
0.76
|
|
75
|
Systems nanobiology: from quantitative single molecule biophysics to microfluidic-based single cell analysis.
|
Subcell Biochem
|
2007
|
0.76
|
|
76
|
Rhizobium-initiated rice growth inhibition caused by nitric oxide accumulation.
|
Mol Plant Microbe Interact
|
2007
|
0.75
|
|
77
|
A Normalized Tree Index for identification of correlated clinical parameters in microarray experiments.
|
BioData Min
|
2011
|
0.75
|
|
78
|
Correction: Quantitative Proteomic Analysis of the Hfq-Regulon in Sinorhizobium meliloti 2011.
|
PLoS One
|
2017
|
0.75
|
|
79
|
Orientation-defined alignment and immobilization of DNA between specific surfaces.
|
Nanotechnology
|
2011
|
0.75
|
|
80
|
Probing DNA-peptide interaction forces at the single-molecule level.
|
J Pept Sci
|
2006
|
0.75
|
|
81
|
No evidence for an effect of testosterone administration on delay discounting in male university students.
|
Psychoneuroendocrinology
|
2013
|
0.75
|